Wall clock time and date at job start Tue Mar 31 2020 18:38:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46905 * 1 3 3 C 1.46897 * 111.00204 * 2 1 4 4 C 1.53002 * 109.46713 * 287.43413 * 3 2 1 5 5 O 1.42900 * 109.47013 * 64.58099 * 4 3 2 6 6 C 1.42903 * 114.00224 * 179.97438 * 5 4 3 7 7 C 1.50699 * 109.47329 * 180.02562 * 6 5 4 8 8 H 1.07996 * 119.99930 * 0.02562 * 7 6 5 9 9 C 1.37874 * 119.99916 * 179.97438 * 7 6 5 10 10 N 1.31519 * 120.00227 * 0.02562 * 9 7 6 11 11 Si 1.86798 * 120.00079 * 179.97438 * 9 7 6 12 12 H 1.48500 * 109.47248 * 180.02562 * 11 9 7 13 13 H 1.48505 * 109.47280 * 300.00208 * 11 9 7 14 14 H 1.48495 * 109.46954 * 60.00105 * 11 9 7 15 15 C 1.46903 * 110.99546 * 123.95293 * 2 1 3 16 16 C 1.53001 * 109.46987 * 159.92676 * 15 2 1 17 17 H 1.09003 * 110.27353 * 52.96060 * 16 15 2 18 18 C 1.54592 * 110.30847 * 290.76760 * 16 15 2 19 19 C 1.54941 * 102.92184 * 219.12618 * 18 16 15 20 20 N 1.48525 * 103.22579 * 37.41654 * 19 18 16 21 21 C 1.46896 * 111.00168 * 200.28010 * 20 19 18 22 22 C 1.47903 * 105.82129 * 320.79191 * 20 19 18 23 23 H 1.09005 * 110.08349 * 265.88987 * 22 20 19 24 24 C 1.50698 * 109.91970 * 144.68692 * 22 20 19 25 25 C 1.38680 * 120.41911 * 142.13268 * 24 22 20 26 26 C 1.38626 * 118.41765 * 179.78183 * 25 24 22 27 27 C 1.38225 * 119.16412 * 0.47097 * 26 25 24 28 28 N 1.31852 * 120.76296 * 359.76863 * 27 26 25 29 29 C 1.31891 * 121.72569 * 0.02562 * 28 27 26 30 30 H 1.08996 * 109.46944 * 66.98554 * 1 2 3 31 31 H 1.08995 * 109.47156 * 186.98895 * 1 2 3 32 32 H 1.09001 * 109.46961 * 306.99300 * 1 2 3 33 33 H 1.09002 * 109.47014 * 167.43743 * 3 2 1 34 34 H 1.08996 * 109.47068 * 47.43522 * 3 2 1 35 35 H 1.08990 * 109.47505 * 304.57964 * 4 3 2 36 36 H 1.09007 * 109.47114 * 184.57663 * 4 3 2 37 37 H 1.08999 * 109.46778 * 59.99866 * 6 5 4 38 38 H 1.09003 * 109.47242 * 300.00443 * 6 5 4 39 39 H 0.97005 * 119.99391 * 359.97438 * 10 9 7 40 40 H 1.09007 * 109.47057 * 279.91848 * 15 2 1 41 41 H 1.08993 * 109.47830 * 39.92428 * 15 2 1 42 42 H 1.09006 * 110.72445 * 337.48423 * 18 16 15 43 43 H 1.09001 * 110.72400 * 100.76751 * 18 16 15 44 44 H 1.08996 * 110.66667 * 278.97485 * 19 18 16 45 45 H 1.09004 * 110.80632 * 155.91335 * 19 18 16 46 46 H 1.08999 * 109.48037 * 177.39499 * 21 20 19 47 47 H 1.09002 * 109.46730 * 297.39512 * 21 20 19 48 48 H 1.09002 * 109.47517 * 57.38781 * 21 20 19 49 49 H 1.07997 * 120.78865 * 0.02562 * 25 24 22 50 50 H 1.08001 * 120.41691 * 180.21843 * 26 25 24 51 51 H 1.07998 * 119.62371 * 179.79616 * 27 26 25 52 52 H 1.08004 * 119.61525 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.7748 2.0023 -1.3763 5 8 0.3729 2.1265 -1.6240 6 6 0.0557 2.7084 -2.8901 7 6 -1.4411 2.7911 -3.0440 8 1 -2.0857 2.4353 -2.2539 9 6 -1.9877 3.3220 -4.1931 10 7 -1.2027 3.7557 -5.1551 11 14 -3.8430 3.4238 -4.3843 12 1 -4.1727 4.0286 -5.6999 13 1 -4.4242 2.0594 -4.3078 14 1 -4.4072 4.2638 -3.2975 15 6 1.9954 -0.7660 1.1377 16 6 3.4431 -1.1715 0.8534 17 1 4.0339 -0.2967 0.5817 18 6 3.4929 -2.2268 -0.2752 19 6 4.6044 -3.1942 0.2039 20 7 4.3980 -3.2475 1.6738 21 6 5.6110 -3.7130 2.3592 22 6 4.0542 -1.8685 2.0831 23 1 4.9513 -1.3382 2.4027 24 6 3.0501 -1.9015 3.2063 25 6 3.1241 -0.9818 4.2416 26 6 2.1763 -1.0471 5.2511 27 6 1.2019 -2.0259 5.1979 28 7 1.1650 -2.8873 4.2003 29 6 2.0477 -2.8524 3.2209 30 1 -0.3633 0.4018 -0.9458 31 1 -0.3633 -1.0200 0.1250 32 1 -0.3633 0.6184 0.8208 33 1 3.0622 1.3511 0.2235 34 1 1.4768 1.9597 0.7569 35 1 2.2245 1.3704 -2.1420 36 1 2.2371 2.9892 -1.4020 37 1 0.4698 2.0914 -3.6875 38 1 0.4823 3.7099 -2.9468 39 1 -0.2392 3.7025 -5.0559 40 1 1.9603 -0.1511 2.0371 41 1 1.3899 -1.6602 1.2850 42 1 2.5387 -2.7470 -0.3593 43 1 3.7664 -1.7646 -1.2237 44 1 5.5905 -2.7942 -0.0319 45 1 4.4753 -4.1819 -0.2387 46 1 5.4478 -3.6987 3.4368 47 1 5.8412 -4.7296 2.0401 48 1 6.4444 -3.0564 2.1092 49 1 3.8993 -0.2300 4.2588 50 1 2.2015 -0.3446 6.0710 51 1 0.4618 -2.0857 5.9821 52 1 1.9853 -3.5746 2.4202 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000339103527.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:38:12 Heat of formation + Delta-G solvation = 1.811460 kcal Electronic energy + Delta-G solvation = -29586.503505 eV Core-core repulsion = 25779.105989 eV Total energy + Delta-G solvation = -3807.397516 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.00131 -39.10486 -37.75975 -36.07376 -33.36977 -32.97534 -32.50635 -31.81929 -29.56554 -28.69114 -27.00423 -26.43594 -25.01069 -23.90296 -23.30975 -23.12362 -22.45545 -21.49076 -20.72597 -19.55725 -17.29260 -17.03190 -16.80584 -16.24660 -16.07762 -15.77585 -15.43780 -14.84094 -14.69559 -14.67254 -14.31251 -13.86045 -13.81039 -13.72540 -13.52805 -13.30940 -13.26637 -12.89064 -12.80674 -12.54789 -12.11757 -12.06516 -11.94827 -11.59760 -11.44904 -11.36363 -11.26783 -11.15282 -11.06040 -10.90768 -10.67655 -10.55889 -10.11610 -10.03791 -9.92636 -9.63931 -9.07481 -8.82761 -8.80499 -8.62184 -8.22777 -8.02829 -6.45758 -4.14371 0.93332 1.09275 3.43373 3.45961 3.52097 3.64637 3.68384 3.97479 4.25207 4.43975 4.46110 4.47072 4.61164 4.66487 4.78350 4.80793 4.81892 4.86711 5.02244 5.06751 5.10728 5.20402 5.26595 5.32260 5.35796 5.36943 5.48201 5.52459 5.57229 5.62277 5.65228 5.70692 5.81075 5.90284 5.90787 5.96877 5.98066 5.99860 6.06482 6.12247 6.14189 6.28250 6.47932 6.59633 6.67430 6.75624 6.87293 7.15043 7.30148 7.37071 7.84712 7.90167 8.19072 8.64200 8.81628 9.56306 10.94493 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.015714 B = 0.002551 C = 0.002354 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1781.368120 B =10974.312178 C =11894.165664 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.533 5.533 3 C 0.061 3.939 4 C 0.065 3.935 5 O -0.382 6.382 6 C 0.186 3.814 7 C -0.595 4.595 8 H 0.059 0.941 9 C 0.017 3.983 10 N -0.911 5.911 11 Si 1.077 2.923 12 H -0.281 1.281 13 H -0.285 1.285 14 H -0.286 1.286 15 C 0.063 3.937 16 C -0.084 4.084 17 H 0.079 0.921 18 C -0.104 4.104 19 C 0.031 3.969 20 N -0.515 5.515 21 C 0.018 3.982 22 C 0.112 3.888 23 H 0.062 0.938 24 C -0.115 4.115 25 C -0.079 4.079 26 C -0.175 4.175 27 C 0.091 3.909 28 N -0.487 5.487 29 C 0.129 3.871 30 H 0.107 0.893 31 H 0.052 0.948 32 H 0.018 0.982 33 H 0.074 0.926 34 H 0.038 0.962 35 H 0.045 0.955 36 H 0.037 0.963 37 H -0.005 1.005 38 H -0.008 1.008 39 H 0.267 0.733 40 H 0.031 0.969 41 H 0.075 0.925 42 H 0.079 0.921 43 H 0.077 0.923 44 H 0.045 0.955 45 H 0.085 0.915 46 H 0.065 0.935 47 H 0.071 0.929 48 H 0.028 0.972 49 H 0.129 0.871 50 H 0.132 0.868 51 H 0.152 0.848 52 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.132 -13.388 19.114 27.813 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.257 5.257 3 C -0.067 4.067 4 C -0.013 4.013 5 O -0.301 6.301 6 C 0.111 3.889 7 C -0.633 4.633 8 H 0.078 0.922 9 C -0.186 4.186 10 N -0.547 5.547 11 Si 0.905 3.095 12 H -0.207 1.207 13 H -0.212 1.212 14 H -0.213 1.213 15 C -0.065 4.065 16 C -0.104 4.104 17 H 0.098 0.902 18 C -0.142 4.142 19 C -0.096 4.096 20 N -0.239 5.239 21 C -0.131 4.131 22 C 0.003 3.997 23 H 0.080 0.920 24 C -0.117 4.117 25 C -0.105 4.105 26 C -0.195 4.195 27 C -0.066 4.066 28 N -0.195 5.195 29 C -0.028 4.028 30 H 0.125 0.875 31 H 0.071 0.929 32 H 0.036 0.964 33 H 0.093 0.907 34 H 0.056 0.944 35 H 0.063 0.937 36 H 0.055 0.945 37 H 0.013 0.987 38 H 0.010 0.990 39 H 0.077 0.923 40 H 0.049 0.951 41 H 0.094 0.906 42 H 0.098 0.902 43 H 0.096 0.904 44 H 0.063 0.937 45 H 0.103 0.897 46 H 0.084 0.916 47 H 0.090 0.910 48 H 0.047 0.953 49 H 0.147 0.853 50 H 0.150 0.850 51 H 0.169 0.831 52 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges 12.871 -14.206 17.909 26.233 hybrid contribution 2.746 1.355 1.608 3.458 sum 15.616 -12.851 19.517 28.106 Atomic orbital electron populations 1.22633 0.85693 0.99972 1.03971 1.61963 1.09206 1.13020 1.41484 1.22172 0.98941 0.88720 0.96892 1.22292 0.85824 0.97479 0.95689 1.87881 1.19772 1.82868 1.39583 1.20256 0.97158 0.91009 0.80432 1.21886 0.90483 1.45177 1.05753 0.92240 1.25915 1.07553 0.93282 0.91899 1.70804 1.05841 1.44130 1.33970 0.83424 0.73281 0.76664 0.76170 1.20652 1.21163 1.21278 1.22364 0.94546 0.97900 0.91666 1.22004 0.96719 0.98257 0.93395 0.90242 1.22427 0.98945 0.95075 0.97703 1.23331 0.98079 1.00755 0.87423 1.64561 1.33281 1.20953 1.05096 1.22496 0.90407 1.00624 0.99574 1.21263 0.95579 0.89688 0.93207 0.91956 1.20625 0.98260 0.96906 0.95919 1.21434 0.98374 0.97632 0.93078 1.22062 0.96724 1.00603 1.00078 1.22760 0.96804 0.90953 0.96035 1.67781 1.25000 1.24643 1.02055 1.22674 0.88788 0.95849 0.95515 0.87494 0.92948 0.96366 0.90747 0.94423 0.93659 0.94476 0.98700 0.99024 0.92308 0.95098 0.90618 0.90208 0.90396 0.93682 0.89695 0.91588 0.91027 0.95337 0.85346 0.85040 0.83081 0.82193 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.42 9.03 60.07 0.54 0.96 16 2 N -0.53 -8.02 4.50 -242.92 -1.09 -9.11 16 3 C 0.06 0.92 5.36 -3.82 -0.02 0.90 16 4 C 0.07 1.20 6.26 37.16 0.23 1.44 16 5 O -0.38 -9.02 7.29 -35.23 -0.26 -9.28 16 6 C 0.19 5.06 5.00 36.00 0.18 5.24 16 7 C -0.59 -17.64 9.43 -34.44 -0.32 -17.96 16 8 H 0.06 1.76 7.81 -52.49 -0.41 1.35 16 9 C 0.02 0.49 5.46 -17.82 -0.10 0.39 16 10 N -0.91 -28.08 13.65 55.43 0.76 -27.33 16 11 Si 1.08 25.59 29.90 -169.99 -5.08 20.51 16 12 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 13 H -0.29 -6.46 7.11 56.52 0.40 -6.06 16 14 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 15 C 0.06 0.78 3.06 -3.82 -0.01 0.76 16 16 C -0.08 -0.84 3.06 -89.26 -0.27 -1.12 16 17 H 0.08 0.80 6.70 -51.93 -0.35 0.45 16 18 C -0.10 -1.02 6.47 -24.87 -0.16 -1.18 16 19 C 0.03 0.26 6.56 -1.90 -0.01 0.24 16 20 N -0.52 -4.40 4.39 -232.17 -1.02 -5.41 16 21 C 0.02 0.12 9.40 60.06 0.56 0.69 16 22 C 0.11 0.99 2.69 -67.79 -0.18 0.81 16 23 H 0.06 0.51 7.65 -51.93 -0.40 0.11 16 24 C -0.11 -1.11 3.27 -104.48 -0.34 -1.45 16 25 C -0.08 -0.69 9.30 -39.27 -0.37 -1.06 16 26 C -0.17 -1.49 10.11 -39.44 -0.40 -1.89 16 27 C 0.09 0.89 11.18 -17.55 -0.20 0.70 16 28 N -0.49 -5.82 10.36 -13.25 -0.14 -5.96 16 29 C 0.13 1.43 8.58 -17.55 -0.15 1.28 16 30 H 0.11 2.23 5.69 -51.93 -0.30 1.93 16 31 H 0.05 0.81 7.80 -51.93 -0.41 0.41 16 32 H 0.02 0.31 7.96 -51.93 -0.41 -0.10 16 33 H 0.07 0.93 6.51 -51.93 -0.34 0.59 16 34 H 0.04 0.60 7.92 -51.93 -0.41 0.19 16 35 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 36 H 0.04 0.66 8.14 -51.93 -0.42 0.23 16 37 H 0.00 -0.13 8.01 -51.93 -0.42 -0.55 16 38 H -0.01 -0.22 8.01 -51.93 -0.42 -0.64 16 39 H 0.27 8.17 7.22 -40.82 -0.29 7.88 16 40 H 0.03 0.40 6.64 -51.92 -0.34 0.05 16 41 H 0.08 0.98 5.83 -51.93 -0.30 0.68 16 42 H 0.08 0.88 7.76 -51.93 -0.40 0.48 16 43 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 44 H 0.04 0.34 7.96 -51.93 -0.41 -0.07 16 45 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 46 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 47 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 48 H 0.03 0.18 8.01 -51.93 -0.42 -0.23 16 49 H 0.13 0.89 8.06 -52.49 -0.42 0.46 16 50 H 0.13 0.80 8.06 -52.49 -0.42 0.38 16 51 H 0.15 1.12 8.06 -52.49 -0.42 0.70 16 52 H 0.16 1.79 7.67 -52.48 -0.40 1.39 16 LS Contribution 403.82 15.07 6.09 6.09 Total: -1.00 -32.51 403.82 -10.79 -43.30 By element: Atomic # 1 Polarization: 7.46 SS G_CDS: -9.03 Total: -1.57 kcal Atomic # 6 Polarization: -10.22 SS G_CDS: -1.02 Total: -11.23 kcal Atomic # 7 Polarization: -46.32 SS G_CDS: -1.49 Total: -47.81 kcal Atomic # 8 Polarization: -9.02 SS G_CDS: -0.26 Total: -9.28 kcal Atomic # 14 Polarization: 25.59 SS G_CDS: -5.08 Total: 20.51 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -32.51 -10.79 -43.30 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339103527.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.115 kcal (2) G-P(sol) polarization free energy of solvation -32.512 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.603 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.792 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.304 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.811 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds