Wall clock time and date at job start Tue Mar 31 2020 18:38:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46905 * 1 3 3 C 1.46897 * 111.00204 * 2 1 4 4 C 1.53002 * 109.46713 * 287.43413 * 3 2 1 5 5 O 1.42900 * 109.47013 * 64.58099 * 4 3 2 6 6 C 1.42903 * 114.00224 * 179.97438 * 5 4 3 7 7 C 1.50699 * 109.47329 * 180.02562 * 6 5 4 8 8 H 1.07996 * 119.99930 * 0.02562 * 7 6 5 9 9 C 1.37874 * 119.99916 * 179.97438 * 7 6 5 10 10 N 1.31519 * 120.00227 * 0.02562 * 9 7 6 11 11 Si 1.86798 * 120.00079 * 179.97438 * 9 7 6 12 12 H 1.48500 * 109.47248 * 180.02562 * 11 9 7 13 13 H 1.48505 * 109.47280 * 300.00208 * 11 9 7 14 14 H 1.48495 * 109.46954 * 60.00105 * 11 9 7 15 15 C 1.46903 * 110.99546 * 123.95293 * 2 1 3 16 16 C 1.53001 * 109.46987 * 159.92676 * 15 2 1 17 17 H 1.09003 * 110.27353 * 52.96060 * 16 15 2 18 18 C 1.54592 * 110.30847 * 290.76760 * 16 15 2 19 19 C 1.54941 * 102.92184 * 219.12618 * 18 16 15 20 20 N 1.48525 * 103.22579 * 37.41654 * 19 18 16 21 21 C 1.46896 * 111.00168 * 200.28010 * 20 19 18 22 22 C 1.47903 * 105.82129 * 320.79191 * 20 19 18 23 23 H 1.09005 * 110.08349 * 265.88987 * 22 20 19 24 24 C 1.50698 * 109.91970 * 144.68692 * 22 20 19 25 25 C 1.38680 * 120.41911 * 142.13268 * 24 22 20 26 26 C 1.38626 * 118.41765 * 179.78183 * 25 24 22 27 27 C 1.38225 * 119.16412 * 0.47097 * 26 25 24 28 28 N 1.31852 * 120.76296 * 359.76863 * 27 26 25 29 29 C 1.31891 * 121.72569 * 0.02562 * 28 27 26 30 30 H 1.08996 * 109.46944 * 66.98554 * 1 2 3 31 31 H 1.08995 * 109.47156 * 186.98895 * 1 2 3 32 32 H 1.09001 * 109.46961 * 306.99300 * 1 2 3 33 33 H 1.09002 * 109.47014 * 167.43743 * 3 2 1 34 34 H 1.08996 * 109.47068 * 47.43522 * 3 2 1 35 35 H 1.08990 * 109.47505 * 304.57964 * 4 3 2 36 36 H 1.09007 * 109.47114 * 184.57663 * 4 3 2 37 37 H 1.08999 * 109.46778 * 59.99866 * 6 5 4 38 38 H 1.09003 * 109.47242 * 300.00443 * 6 5 4 39 39 H 0.97005 * 119.99391 * 359.97438 * 10 9 7 40 40 H 1.09007 * 109.47057 * 279.91848 * 15 2 1 41 41 H 1.08993 * 109.47830 * 39.92428 * 15 2 1 42 42 H 1.09006 * 110.72445 * 337.48423 * 18 16 15 43 43 H 1.09001 * 110.72400 * 100.76751 * 18 16 15 44 44 H 1.08996 * 110.66667 * 278.97485 * 19 18 16 45 45 H 1.09004 * 110.80632 * 155.91335 * 19 18 16 46 46 H 1.08999 * 109.48037 * 177.39499 * 21 20 19 47 47 H 1.09002 * 109.46730 * 297.39512 * 21 20 19 48 48 H 1.09002 * 109.47517 * 57.38781 * 21 20 19 49 49 H 1.07997 * 120.78865 * 0.02562 * 25 24 22 50 50 H 1.08001 * 120.41691 * 180.21843 * 26 25 24 51 51 H 1.07998 * 119.62371 * 179.79616 * 27 26 25 52 52 H 1.08004 * 119.61525 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.7748 2.0023 -1.3763 5 8 0.3729 2.1265 -1.6240 6 6 0.0557 2.7084 -2.8901 7 6 -1.4411 2.7911 -3.0440 8 1 -2.0857 2.4353 -2.2539 9 6 -1.9877 3.3220 -4.1931 10 7 -1.2027 3.7557 -5.1551 11 14 -3.8430 3.4238 -4.3843 12 1 -4.1727 4.0286 -5.6999 13 1 -4.4242 2.0594 -4.3078 14 1 -4.4072 4.2638 -3.2975 15 6 1.9954 -0.7660 1.1377 16 6 3.4431 -1.1715 0.8534 17 1 4.0339 -0.2967 0.5817 18 6 3.4929 -2.2268 -0.2752 19 6 4.6044 -3.1942 0.2039 20 7 4.3980 -3.2475 1.6738 21 6 5.6110 -3.7130 2.3592 22 6 4.0542 -1.8685 2.0831 23 1 4.9513 -1.3382 2.4027 24 6 3.0501 -1.9015 3.2063 25 6 3.1241 -0.9818 4.2416 26 6 2.1763 -1.0471 5.2511 27 6 1.2019 -2.0259 5.1979 28 7 1.1650 -2.8873 4.2003 29 6 2.0477 -2.8524 3.2209 30 1 -0.3633 0.4018 -0.9458 31 1 -0.3633 -1.0200 0.1250 32 1 -0.3633 0.6184 0.8208 33 1 3.0622 1.3511 0.2235 34 1 1.4768 1.9597 0.7569 35 1 2.2245 1.3704 -2.1420 36 1 2.2371 2.9892 -1.4020 37 1 0.4698 2.0914 -3.6875 38 1 0.4823 3.7099 -2.9468 39 1 -0.2392 3.7025 -5.0559 40 1 1.9603 -0.1511 2.0371 41 1 1.3899 -1.6602 1.2850 42 1 2.5387 -2.7470 -0.3593 43 1 3.7664 -1.7646 -1.2237 44 1 5.5905 -2.7942 -0.0319 45 1 4.4753 -4.1819 -0.2387 46 1 5.4478 -3.6987 3.4368 47 1 5.8412 -4.7296 2.0401 48 1 6.4444 -3.0564 2.1092 49 1 3.8993 -0.2300 4.2588 50 1 2.2015 -0.3446 6.0710 51 1 0.4618 -2.0857 5.9821 52 1 1.9853 -3.5746 2.4202 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000339103527.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:38:11 Heat of formation + Delta-G solvation = -19.541135 kcal Electronic energy + Delta-G solvation = -29587.429423 eV Core-core repulsion = 25779.105989 eV Total energy + Delta-G solvation = -3808.323434 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.74640 -39.92670 -39.18051 -37.59297 -35.20886 -34.06206 -33.36150 -32.52148 -31.03255 -29.53380 -28.58090 -27.81940 -25.94566 -24.90263 -24.62730 -24.22873 -23.93719 -22.50632 -21.65996 -20.41223 -19.19276 -18.01128 -17.74491 -17.47734 -17.24283 -16.82586 -16.61518 -16.04388 -15.89770 -15.62683 -15.37410 -15.30352 -15.02513 -14.80083 -14.70190 -14.34723 -14.16655 -13.93224 -13.91715 -13.78033 -13.41504 -13.23702 -13.09084 -12.98226 -12.74267 -12.61474 -12.47250 -12.27218 -12.19724 -12.04259 -11.94613 -11.90839 -11.57167 -11.44462 -10.83553 -10.81422 -10.67536 -10.38001 -10.28372 -9.81363 -9.43788 -9.27002 -8.82683 -6.53366 0.21864 0.39061 1.51986 1.60708 1.81601 2.49148 2.81521 2.85871 3.01919 3.03975 3.09038 3.51030 3.68167 3.72593 3.80670 4.01233 4.02650 4.07018 4.13748 4.17748 4.23998 4.33502 4.38650 4.43426 4.45166 4.47520 4.50288 4.53173 4.58549 4.61512 4.65558 4.70285 4.75329 4.79228 4.85193 4.90292 4.93181 4.95277 5.00977 5.10177 5.20245 5.23117 5.32523 5.34415 5.34751 5.68851 5.79290 5.92245 5.93927 6.01875 6.07037 6.15813 6.34584 6.67841 7.10993 7.27362 8.58464 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.015714 B = 0.002551 C = 0.002354 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1781.368120 B =10974.312178 C =11894.165664 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 N -0.539 5.539 3 C 0.070 3.930 4 C 0.056 3.944 5 O -0.391 6.391 6 C 0.198 3.802 7 C -0.619 4.619 8 H 0.053 0.947 9 C -0.029 4.029 10 N -0.929 5.929 11 Si 1.125 2.875 12 H -0.276 1.276 13 H -0.268 1.268 14 H -0.268 1.268 15 C 0.075 3.925 16 C -0.080 4.080 17 H 0.087 0.913 18 C -0.104 4.104 19 C 0.039 3.961 20 N -0.527 5.527 21 C 0.019 3.981 22 C 0.120 3.880 23 H 0.078 0.922 24 C -0.117 4.117 25 C -0.082 4.082 26 C -0.171 4.171 27 C 0.076 3.924 28 N -0.518 5.518 29 C 0.114 3.886 30 H 0.068 0.932 31 H 0.062 0.938 32 H 0.012 0.988 33 H 0.112 0.888 34 H 0.032 0.968 35 H 0.045 0.955 36 H 0.048 0.952 37 H -0.021 1.021 38 H -0.021 1.021 39 H 0.256 0.744 40 H 0.031 0.969 41 H 0.066 0.934 42 H 0.062 0.938 43 H 0.072 0.928 44 H 0.056 0.944 45 H 0.088 0.912 46 H 0.063 0.937 47 H 0.077 0.923 48 H 0.038 0.962 49 H 0.152 0.848 50 H 0.159 0.841 51 H 0.169 0.831 52 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.153 -13.318 20.693 29.436 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 N -0.263 5.263 3 C -0.058 4.058 4 C -0.021 4.021 5 O -0.311 6.311 6 C 0.123 3.877 7 C -0.657 4.657 8 H 0.071 0.929 9 C -0.227 4.227 10 N -0.566 5.566 11 Si 0.945 3.055 12 H -0.201 1.201 13 H -0.193 1.193 14 H -0.193 1.193 15 C -0.053 4.053 16 C -0.099 4.099 17 H 0.105 0.895 18 C -0.142 4.142 19 C -0.088 4.088 20 N -0.251 5.251 21 C -0.129 4.129 22 C 0.010 3.990 23 H 0.096 0.904 24 C -0.120 4.120 25 C -0.109 4.109 26 C -0.191 4.191 27 C -0.081 4.081 28 N -0.227 5.227 29 C -0.043 4.043 30 H 0.087 0.913 31 H 0.081 0.919 32 H 0.030 0.970 33 H 0.130 0.870 34 H 0.050 0.950 35 H 0.063 0.937 36 H 0.066 0.934 37 H -0.003 1.003 38 H -0.003 1.003 39 H 0.065 0.935 40 H 0.049 0.951 41 H 0.084 0.916 42 H 0.080 0.920 43 H 0.091 0.909 44 H 0.075 0.925 45 H 0.107 0.893 46 H 0.082 0.918 47 H 0.096 0.904 48 H 0.056 0.944 49 H 0.170 0.830 50 H 0.177 0.823 51 H 0.186 0.814 52 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 13.935 -14.155 19.513 27.844 hybrid contribution 2.507 1.285 1.194 3.060 sum 16.441 -12.870 20.707 29.406 Atomic orbital electron populations 1.22401 0.87323 1.00132 1.01457 1.61929 1.07835 1.13292 1.43210 1.22150 1.01033 0.88290 0.94300 1.22628 0.83129 0.98536 0.97798 1.87887 1.23220 1.82461 1.37506 1.19895 0.96058 0.90106 0.81676 1.22240 0.91809 1.45584 1.06037 0.92880 1.27555 1.11904 0.91960 0.91271 1.70928 1.05462 1.45430 1.34781 0.82849 0.67862 0.77956 0.76873 1.20140 1.19266 1.19258 1.22303 0.95753 0.96856 0.90389 1.21965 0.95105 0.98646 0.94178 0.89481 1.22366 0.98836 0.95403 0.97569 1.23272 0.97793 1.00537 0.87227 1.64551 1.34374 1.20878 1.05302 1.22503 0.89986 1.01153 0.99239 1.21200 0.95702 0.89887 0.92190 0.90421 1.20703 0.97954 0.96758 0.96564 1.21777 0.98865 0.97655 0.92575 1.22381 0.95785 1.00295 1.00612 1.23162 0.97815 0.91074 0.96017 1.67723 1.25940 1.26030 1.03035 1.22584 0.89647 0.96565 0.95505 0.91326 0.91919 0.96958 0.87034 0.95002 0.93714 0.93398 1.00326 1.00336 0.93528 0.95091 0.91579 0.91958 0.90912 0.92547 0.89325 0.91841 0.90437 0.94358 0.82991 0.82345 0.81374 0.83310 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.22 9.03 127.69 1.15 2.37 16 2 N -0.54 -15.91 4.50 -922.45 -4.15 -20.07 16 3 C 0.07 2.03 5.36 86.30 0.46 2.49 16 4 C 0.06 2.07 6.26 71.98 0.45 2.52 16 5 O -0.39 -18.91 7.29 -148.98 -1.09 -20.00 16 6 C 0.20 11.09 5.00 71.24 0.36 11.45 16 7 C -0.62 -37.43 9.43 25.60 0.24 -37.18 16 8 H 0.05 3.20 7.81 -2.91 -0.02 3.18 16 9 C -0.03 -1.74 5.46 84.65 0.46 -1.28 16 10 N -0.93 -57.98 13.65 21.45 0.29 -57.69 16 11 Si 1.13 50.93 29.90 68.60 2.05 52.98 16 12 H -0.28 -12.23 7.11 99.48 0.71 -11.52 16 13 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 14 H -0.27 -11.24 7.11 99.48 0.71 -10.54 16 15 C 0.07 1.74 3.06 86.30 0.26 2.01 16 16 C -0.08 -1.44 3.06 -9.92 -0.03 -1.47 16 17 H 0.09 1.48 6.70 -2.39 -0.02 1.46 16 18 C -0.10 -1.94 6.47 31.80 0.21 -1.73 16 19 C 0.04 0.57 6.56 86.65 0.57 1.14 16 20 N -0.53 -8.10 4.39 -888.45 -3.90 -12.00 16 21 C 0.02 0.23 9.40 127.69 1.20 1.43 16 22 C 0.12 1.85 2.69 44.31 0.12 1.97 16 23 H 0.08 0.99 7.65 -2.38 -0.02 0.98 16 24 C -0.12 -2.08 3.27 -19.77 -0.06 -2.14 16 25 C -0.08 -1.23 9.30 22.47 0.21 -1.02 16 26 C -0.17 -2.51 10.11 22.36 0.23 -2.29 16 27 C 0.08 1.40 11.18 84.69 0.95 2.35 16 28 N -0.52 -12.34 10.36 -195.84 -2.03 -14.37 16 29 C 0.11 2.50 8.58 84.67 0.73 3.23 16 30 H 0.07 2.96 5.69 -2.39 -0.01 2.95 16 31 H 0.06 1.99 7.80 -2.39 -0.02 1.97 16 32 H 0.01 0.42 7.96 -2.39 -0.02 0.40 16 33 H 0.11 2.43 6.51 -2.39 -0.02 2.41 16 34 H 0.03 0.98 7.92 -2.39 -0.02 0.96 16 35 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 36 H 0.05 1.66 8.14 -2.38 -0.02 1.64 16 37 H -0.02 -1.22 8.01 -2.39 -0.02 -1.23 16 38 H -0.02 -1.21 8.01 -2.39 -0.02 -1.23 16 39 H 0.26 16.08 7.22 -92.70 -0.67 15.41 16 40 H 0.03 0.74 6.64 -2.38 -0.02 0.72 16 41 H 0.07 1.71 5.83 -2.39 -0.01 1.69 16 42 H 0.06 1.38 7.76 -2.38 -0.02 1.36 16 43 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 44 H 0.06 0.71 7.96 -2.39 -0.02 0.69 16 45 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 46 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 47 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 48 H 0.04 0.39 8.01 -2.39 -0.02 0.37 16 49 H 0.15 1.51 8.06 -2.91 -0.02 1.49 16 50 H 0.16 1.40 8.06 -2.91 -0.02 1.37 16 51 H 0.17 2.29 8.06 -2.91 -0.02 2.27 16 52 H 0.15 3.44 7.67 -2.91 -0.02 3.42 16 Total: -1.00 -71.48 403.82 -0.35 -71.83 By element: Atomic # 1 Polarization: 14.50 SS G_CDS: 0.97 Total: 15.48 kcal Atomic # 6 Polarization: -23.67 SS G_CDS: 7.50 Total: -16.17 kcal Atomic # 7 Polarization: -94.33 SS G_CDS: -9.79 Total: -104.12 kcal Atomic # 8 Polarization: -18.91 SS G_CDS: -1.09 Total: -20.00 kcal Atomic # 14 Polarization: 50.93 SS G_CDS: 2.05 Total: 52.98 kcal Total: -71.48 -0.35 -71.83 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339103527.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.293 kcal (2) G-P(sol) polarization free energy of solvation -71.483 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.190 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.351 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.834 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.541 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds