Wall clock time and date at job start Tue Mar 31 2020 18:38:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46899 * 111.00109 * 2 1 4 4 C 1.52997 * 109.46892 * 66.04489 * 3 2 1 5 5 O 1.42899 * 109.47099 * 65.00491 * 4 3 2 6 6 C 1.42899 * 113.99922 * 180.02562 * 5 4 3 7 7 C 1.50706 * 109.46899 * 179.97438 * 6 5 4 8 8 H 1.08000 * 119.99999 * 359.97438 * 7 6 5 9 9 C 1.37879 * 119.99438 * 179.97438 * 7 6 5 10 10 N 1.31511 * 120.00638 * 0.02562 * 9 7 6 11 11 Si 1.86805 * 119.99512 * 179.97438 * 9 7 6 12 12 H 1.48503 * 109.47128 * 60.00077 * 11 9 7 13 13 H 1.48499 * 109.47089 * 179.97438 * 11 9 7 14 14 H 1.48495 * 109.47107 * 299.99924 * 11 9 7 15 15 C 1.46905 * 110.99850 * 236.04855 * 2 1 3 16 16 C 1.53000 * 109.47002 * 293.95207 * 15 2 1 17 17 H 1.09003 * 110.63014 * 54.29940 * 16 15 2 18 18 C 1.55136 * 110.70862 * 291.19890 * 16 15 2 19 19 C 1.54910 * 101.65701 * 205.96656 * 18 16 15 20 20 N 1.47842 * 104.79598 * 37.06149 * 19 18 16 21 21 C 1.46894 * 111.00352 * 213.63832 * 20 19 18 22 22 C 1.47736 * 108.60007 * 335.76080 * 20 19 18 23 23 H 1.08997 * 109.85750 * 120.52568 * 22 20 19 24 24 C 1.50702 * 110.06607 * 241.80546 * 22 20 19 25 25 C 1.38677 * 120.41680 * 65.27714 * 24 22 20 26 26 C 1.38633 * 118.41974 * 180.02562 * 25 24 22 27 27 C 1.38228 * 119.15847 * 0.02562 * 26 25 24 28 28 N 1.31853 * 120.76647 * 359.97438 * 27 26 25 29 29 C 1.31889 * 121.72424 * 359.70751 * 28 27 26 30 30 H 1.09007 * 109.47471 * 59.99939 * 1 2 3 31 31 H 1.08997 * 109.47285 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.47382 * 299.99876 * 1 2 3 33 33 H 1.08997 * 109.47116 * 186.04790 * 3 2 1 34 34 H 1.09006 * 109.46827 * 306.04921 * 3 2 1 35 35 H 1.09002 * 109.46897 * 184.99990 * 4 3 2 36 36 H 1.09000 * 109.47479 * 305.00150 * 4 3 2 37 37 H 1.08995 * 109.47089 * 299.99403 * 6 5 4 38 38 H 1.08996 * 109.47394 * 59.99390 * 6 5 4 39 39 H 0.96994 * 120.00482 * 180.02562 * 10 9 7 40 40 H 1.08993 * 109.47264 * 53.95255 * 15 2 1 41 41 H 1.08997 * 109.47014 * 173.95355 * 15 2 1 42 42 H 1.09008 * 110.98980 * 324.05631 * 18 16 15 43 43 H 1.09001 * 110.99314 * 87.86919 * 18 16 15 44 44 H 1.08999 * 110.37679 * 155.89730 * 19 18 16 45 45 H 1.09001 * 110.36641 * 278.23744 * 19 18 16 46 46 H 1.09005 * 109.46996 * 51.50883 * 21 20 19 47 47 H 1.09002 * 109.47409 * 171.50039 * 21 20 19 48 48 H 1.08998 * 109.47310 * 291.50638 * 21 20 19 49 49 H 1.07999 * 120.78863 * 0.03148 * 25 24 22 50 50 H 1.07994 * 120.41513 * 179.97438 * 26 25 24 51 51 H 1.08001 * 119.60983 * 179.97438 * 27 26 25 52 52 H 1.07997 * 119.61642 * 180.31130 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6314 2.0574 1.3182 5 8 2.2956 1.3975 2.3978 6 6 2.0213 1.9627 3.6813 7 6 2.7688 1.1926 4.7394 8 1 3.3906 0.3551 4.4597 9 6 2.6586 1.5574 6.0645 10 7 1.9009 2.5769 6.4052 11 14 3.5844 0.6024 7.3761 12 1 5.0426 0.6744 7.1042 13 1 3.3005 1.1906 8.7098 14 1 3.1468 -0.8165 7.3570 15 6 1.9954 -0.7660 -1.1377 16 6 1.6314 -2.2426 -0.9704 17 1 0.5569 -2.3597 -0.8293 18 6 2.4117 -2.8691 0.2151 19 6 2.4553 -4.3627 -0.1933 20 7 2.6285 -4.3478 -1.6614 21 6 1.9337 -5.4818 -2.2851 22 6 2.1152 -3.0646 -2.1835 23 1 2.9122 -2.5296 -2.6999 24 6 0.9658 -3.3126 -3.1261 25 6 -0.2195 -3.8603 -2.6590 26 6 -1.2498 -4.0713 -3.5622 27 6 -1.0625 -3.7317 -4.8890 28 7 0.0786 -3.2127 -5.2977 29 6 1.0778 -2.9924 -4.4655 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3634 0.5138 0.8900 33 1 3.0797 1.3444 -0.1083 34 1 1.5610 1.9273 -0.8309 35 1 1.9439 3.1011 1.2831 36 1 0.5532 2.0057 1.4691 37 1 2.3415 3.0045 3.6955 38 1 0.9512 1.9088 3.8809 39 1 1.8237 2.8337 7.3373 40 1 1.5611 -0.3872 -2.0628 41 1 3.0797 -0.6611 -1.1757 42 1 3.4171 -2.4536 0.2839 43 1 1.8710 -2.7361 1.1522 44 1 3.2988 -4.8620 0.2834 45 1 1.5208 -4.8564 0.0735 46 1 0.9011 -5.5112 -1.9371 47 1 1.9486 -5.3656 -3.3688 48 1 2.4357 -6.4101 -2.0123 49 1 -0.3372 -4.1162 -1.6164 50 1 -2.1866 -4.4964 -3.2335 51 1 -1.8601 -3.8933 -5.5990 52 1 1.9959 -2.5611 -4.8362 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000339103529.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:38:20 Heat of formation + Delta-G solvation = 10.397195 kcal Electronic energy + Delta-G solvation = -29334.945259 eV Core-core repulsion = 25527.920049 eV Total energy + Delta-G solvation = -3807.025210 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.23895 -39.15140 -37.70233 -36.02920 -33.11692 -32.85467 -32.43637 -32.11911 -29.51805 -28.52139 -27.17415 -26.87972 -25.56918 -23.93483 -23.85170 -22.77315 -22.24027 -21.03868 -20.34149 -19.92369 -17.59252 -16.82566 -16.52631 -16.34469 -15.84645 -15.72494 -15.42917 -15.03436 -14.85173 -14.65551 -14.40276 -14.17310 -13.89745 -13.85814 -13.62130 -13.47342 -13.19661 -12.90294 -12.63867 -12.50300 -12.10159 -11.88627 -11.79093 -11.71035 -11.57360 -11.40468 -11.25761 -11.06347 -10.93509 -10.79458 -10.69451 -10.57260 -10.34068 -10.01344 -9.94952 -9.78754 -9.34981 -9.05654 -8.75272 -8.54818 -8.12356 -8.04924 -6.06915 -4.07822 0.73368 0.91122 3.34570 3.36979 3.39936 3.41128 3.80484 3.95148 4.04068 4.29194 4.38000 4.44328 4.56403 4.60564 4.64694 4.74837 4.84332 4.94493 5.06300 5.13091 5.14454 5.25459 5.26419 5.29471 5.34224 5.38156 5.41501 5.50448 5.53923 5.61796 5.63250 5.68256 5.73145 5.75299 5.78239 5.90400 5.98536 6.02285 6.06440 6.17631 6.19984 6.31048 6.33671 6.34853 6.67603 6.77346 7.14492 7.23192 7.24485 7.48241 7.63230 7.84623 8.21443 8.66786 9.06818 9.56846 11.04756 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.016596 B = 0.002484 C = 0.002293 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1686.743692 B =11269.333993 C =12208.746538 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 N -0.522 5.522 3 C 0.062 3.938 4 C 0.067 3.933 5 O -0.379 6.379 6 C 0.195 3.805 7 C -0.510 4.510 8 H 0.066 0.934 9 C 0.055 3.945 10 N -0.901 5.901 11 Si 0.907 3.093 12 H -0.275 1.275 13 H -0.287 1.287 14 H -0.275 1.275 15 C 0.068 3.932 16 C -0.096 4.096 17 H 0.078 0.922 18 C -0.109 4.109 19 C 0.034 3.966 20 N -0.517 5.517 21 C 0.014 3.986 22 C 0.116 3.884 23 H 0.098 0.902 24 C -0.140 4.140 25 C -0.066 4.066 26 C -0.173 4.173 27 C 0.094 3.906 28 N -0.484 5.484 29 C 0.107 3.893 30 H 0.017 0.983 31 H 0.063 0.937 32 H 0.074 0.926 33 H 0.080 0.920 34 H 0.037 0.963 35 H 0.038 0.962 36 H 0.036 0.964 37 H 0.001 0.999 38 H 0.002 0.998 39 H 0.263 0.737 40 H 0.028 0.972 41 H 0.078 0.922 42 H 0.081 0.919 43 H 0.085 0.915 44 H 0.084 0.916 45 H 0.044 0.956 46 H 0.034 0.966 47 H 0.065 0.935 48 H 0.066 0.934 49 H 0.130 0.870 50 H 0.134 0.866 51 H 0.154 0.846 52 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.091 -13.563 -21.892 26.251 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 N -0.246 5.246 3 C -0.066 4.066 4 C -0.012 4.012 5 O -0.298 6.298 6 C 0.120 3.880 7 C -0.548 4.548 8 H 0.084 0.916 9 C -0.146 4.146 10 N -0.540 5.540 11 Si 0.734 3.266 12 H -0.200 1.200 13 H -0.213 1.213 14 H -0.200 1.200 15 C -0.060 4.060 16 C -0.116 4.116 17 H 0.097 0.903 18 C -0.147 4.147 19 C -0.093 4.093 20 N -0.240 5.240 21 C -0.134 4.134 22 C 0.007 3.993 23 H 0.116 0.884 24 C -0.143 4.143 25 C -0.092 4.092 26 C -0.193 4.193 27 C -0.063 4.063 28 N -0.192 5.192 29 C -0.050 4.050 30 H 0.036 0.964 31 H 0.082 0.918 32 H 0.092 0.908 33 H 0.099 0.901 34 H 0.055 0.945 35 H 0.056 0.944 36 H 0.054 0.946 37 H 0.019 0.981 38 H 0.020 0.980 39 H 0.073 0.927 40 H 0.046 0.954 41 H 0.097 0.903 42 H 0.100 0.900 43 H 0.104 0.896 44 H 0.102 0.898 45 H 0.062 0.938 46 H 0.053 0.947 47 H 0.083 0.917 48 H 0.085 0.915 49 H 0.148 0.852 50 H 0.152 0.848 51 H 0.171 0.829 52 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -4.220 -13.695 -22.322 26.526 hybrid contribution -1.201 0.067 1.174 1.681 sum -5.421 -13.628 -21.148 25.736 Atomic orbital electron populations 1.22453 0.88012 1.01543 1.00534 1.61819 1.07267 1.13760 1.41748 1.22149 1.00805 0.87857 0.95762 1.22247 0.96118 0.94566 0.88229 1.87942 1.69564 1.56855 1.15446 1.20156 0.95487 0.93486 0.78837 1.21021 1.28145 1.15217 0.90395 0.91568 1.24947 0.95725 0.95417 0.98496 1.69951 1.39086 1.27044 1.17962 0.86415 0.80178 0.79985 0.80004 1.20030 1.21256 1.20029 1.22057 1.00415 0.92207 0.91352 1.22515 1.00432 0.94582 0.94063 0.90335 1.22644 1.01642 0.92408 0.98007 1.23226 1.00636 0.98245 0.87203 1.64058 1.53452 1.01237 1.05248 1.22793 0.96738 0.94224 0.99635 1.21519 0.92800 0.91357 0.93614 0.88424 1.21202 0.96334 1.00308 0.96447 1.21461 0.92275 0.95368 1.00131 1.22124 1.00052 1.02221 0.94866 1.22762 0.94871 0.94383 0.94285 1.67711 1.00714 1.12128 1.38677 1.22690 0.97380 0.95914 0.89044 0.96442 0.91828 0.90750 0.90106 0.94528 0.94421 0.94638 0.98095 0.98048 0.92700 0.95427 0.90309 0.90012 0.89616 0.89810 0.93794 0.94739 0.91654 0.91540 0.85173 0.84799 0.82872 0.82772 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.30 9.14 60.06 0.55 0.85 16 2 N -0.52 -7.45 4.58 -242.92 -1.11 -8.56 16 3 C 0.06 0.92 5.34 -3.83 -0.02 0.90 16 4 C 0.07 1.23 5.99 37.16 0.22 1.45 16 5 O -0.38 -9.15 10.27 -35.23 -0.36 -9.51 16 6 C 0.19 5.39 5.69 36.01 0.20 5.59 16 7 C -0.51 -15.10 9.43 -34.44 -0.32 -15.42 16 8 H 0.07 1.95 7.81 -52.49 -0.41 1.54 16 9 C 0.05 1.60 5.46 -17.82 -0.10 1.50 16 10 N -0.90 -27.16 13.29 55.43 0.74 -26.42 16 11 Si 0.91 21.98 29.54 -169.99 -5.02 16.96 16 12 H -0.27 -6.54 7.11 56.52 0.40 -6.13 16 13 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 14 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 15 C 0.07 0.78 4.25 -3.82 -0.02 0.77 16 16 C -0.10 -1.00 2.26 -88.80 -0.20 -1.20 16 17 H 0.08 0.84 4.77 -51.93 -0.25 0.59 16 18 C -0.11 -1.25 6.40 -24.59 -0.16 -1.41 16 19 C 0.03 0.34 6.73 -2.30 -0.02 0.32 16 20 N -0.52 -5.04 5.46 -232.72 -1.27 -6.31 16 21 C 0.01 0.12 8.23 60.06 0.49 0.62 16 22 C 0.12 1.08 3.26 -67.71 -0.22 0.86 16 23 H 0.10 0.90 7.62 -51.93 -0.40 0.50 16 24 C -0.14 -1.24 3.08 -104.48 -0.32 -1.56 16 25 C -0.07 -0.54 6.41 -39.27 -0.25 -0.80 16 26 C -0.17 -1.28 10.11 -39.44 -0.40 -1.68 16 27 C 0.09 0.77 11.18 -17.55 -0.20 0.58 16 28 N -0.48 -4.91 10.36 -13.25 -0.14 -5.04 16 29 C 0.11 0.99 10.76 -17.55 -0.19 0.80 16 30 H 0.02 0.21 8.14 -51.93 -0.42 -0.22 16 31 H 0.06 0.76 6.22 -51.93 -0.32 0.44 16 32 H 0.07 1.09 6.37 -51.93 -0.33 0.76 16 33 H 0.08 1.20 7.93 -51.93 -0.41 0.79 16 34 H 0.04 0.46 8.12 -51.93 -0.42 0.04 16 35 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.04 0.65 6.34 -51.93 -0.33 0.32 16 37 H 0.00 0.04 8.14 -51.93 -0.42 -0.39 16 38 H 0.00 0.05 8.14 -51.93 -0.42 -0.37 16 39 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 40 H 0.03 0.30 8.12 -51.93 -0.42 -0.12 16 41 H 0.08 0.91 7.85 -51.93 -0.41 0.50 16 42 H 0.08 1.03 7.98 -51.92 -0.41 0.62 16 43 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 44 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 45 H 0.04 0.41 7.64 -51.93 -0.40 0.01 16 46 H 0.03 0.28 5.08 -51.93 -0.26 0.02 16 47 H 0.06 0.59 6.95 -51.93 -0.36 0.23 16 48 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 49 H 0.13 1.02 6.87 -52.49 -0.36 0.66 16 50 H 0.13 0.69 8.06 -52.49 -0.42 0.26 16 51 H 0.15 0.87 8.06 -52.49 -0.42 0.45 16 52 H 0.16 1.19 7.98 -52.49 -0.42 0.77 16 LS Contribution 403.60 15.07 6.08 6.08 Total: -1.00 -32.44 403.60 -10.88 -43.32 By element: Atomic # 1 Polarization: 6.16 SS G_CDS: -8.85 Total: -2.69 kcal Atomic # 6 Polarization: -6.89 SS G_CDS: -0.94 Total: -7.83 kcal Atomic # 7 Polarization: -44.55 SS G_CDS: -1.78 Total: -46.33 kcal Atomic # 8 Polarization: -9.15 SS G_CDS: -0.36 Total: -9.51 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.96 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -32.44 -10.88 -43.32 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339103529.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.715 kcal (2) G-P(sol) polarization free energy of solvation -32.441 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.273 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.876 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.317 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.397 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds