Wall clock time and date at job start Tue Mar 31 2020 18:38:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46899 * 111.00109 * 2 1 4 4 C 1.52997 * 109.46892 * 66.04489 * 3 2 1 5 5 O 1.42899 * 109.47099 * 65.00491 * 4 3 2 6 6 C 1.42899 * 113.99922 * 180.02562 * 5 4 3 7 7 C 1.50706 * 109.46899 * 179.97438 * 6 5 4 8 8 H 1.08000 * 119.99999 * 359.97438 * 7 6 5 9 9 C 1.37879 * 119.99438 * 179.97438 * 7 6 5 10 10 N 1.31511 * 120.00638 * 0.02562 * 9 7 6 11 11 Si 1.86805 * 119.99512 * 179.97438 * 9 7 6 12 12 H 1.48503 * 109.47128 * 60.00077 * 11 9 7 13 13 H 1.48499 * 109.47089 * 179.97438 * 11 9 7 14 14 H 1.48495 * 109.47107 * 299.99924 * 11 9 7 15 15 C 1.46905 * 110.99850 * 236.04855 * 2 1 3 16 16 C 1.53000 * 109.47002 * 293.95207 * 15 2 1 17 17 H 1.09003 * 110.63014 * 54.29940 * 16 15 2 18 18 C 1.55136 * 110.70862 * 291.19890 * 16 15 2 19 19 C 1.54910 * 101.65701 * 205.96656 * 18 16 15 20 20 N 1.47842 * 104.79598 * 37.06149 * 19 18 16 21 21 C 1.46894 * 111.00352 * 213.63832 * 20 19 18 22 22 C 1.47736 * 108.60007 * 335.76080 * 20 19 18 23 23 H 1.08997 * 109.85750 * 120.52568 * 22 20 19 24 24 C 1.50702 * 110.06607 * 241.80546 * 22 20 19 25 25 C 1.38677 * 120.41680 * 65.27714 * 24 22 20 26 26 C 1.38633 * 118.41974 * 180.02562 * 25 24 22 27 27 C 1.38228 * 119.15847 * 0.02562 * 26 25 24 28 28 N 1.31853 * 120.76647 * 359.97438 * 27 26 25 29 29 C 1.31889 * 121.72424 * 359.70751 * 28 27 26 30 30 H 1.09007 * 109.47471 * 59.99939 * 1 2 3 31 31 H 1.08997 * 109.47285 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.47382 * 299.99876 * 1 2 3 33 33 H 1.08997 * 109.47116 * 186.04790 * 3 2 1 34 34 H 1.09006 * 109.46827 * 306.04921 * 3 2 1 35 35 H 1.09002 * 109.46897 * 184.99990 * 4 3 2 36 36 H 1.09000 * 109.47479 * 305.00150 * 4 3 2 37 37 H 1.08995 * 109.47089 * 299.99403 * 6 5 4 38 38 H 1.08996 * 109.47394 * 59.99390 * 6 5 4 39 39 H 0.96994 * 120.00482 * 180.02562 * 10 9 7 40 40 H 1.08993 * 109.47264 * 53.95255 * 15 2 1 41 41 H 1.08997 * 109.47014 * 173.95355 * 15 2 1 42 42 H 1.09008 * 110.98980 * 324.05631 * 18 16 15 43 43 H 1.09001 * 110.99314 * 87.86919 * 18 16 15 44 44 H 1.08999 * 110.37679 * 155.89730 * 19 18 16 45 45 H 1.09001 * 110.36641 * 278.23744 * 19 18 16 46 46 H 1.09005 * 109.46996 * 51.50883 * 21 20 19 47 47 H 1.09002 * 109.47409 * 171.50039 * 21 20 19 48 48 H 1.08998 * 109.47310 * 291.50638 * 21 20 19 49 49 H 1.07999 * 120.78863 * 0.03148 * 25 24 22 50 50 H 1.07994 * 120.41513 * 179.97438 * 26 25 24 51 51 H 1.08001 * 119.60983 * 179.97438 * 27 26 25 52 52 H 1.07997 * 119.61642 * 180.31130 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6314 2.0574 1.3182 5 8 2.2956 1.3975 2.3978 6 6 2.0213 1.9627 3.6813 7 6 2.7688 1.1926 4.7394 8 1 3.3906 0.3551 4.4597 9 6 2.6586 1.5574 6.0645 10 7 1.9009 2.5769 6.4052 11 14 3.5844 0.6024 7.3761 12 1 5.0426 0.6744 7.1042 13 1 3.3005 1.1906 8.7098 14 1 3.1468 -0.8165 7.3570 15 6 1.9954 -0.7660 -1.1377 16 6 1.6314 -2.2426 -0.9704 17 1 0.5569 -2.3597 -0.8293 18 6 2.4117 -2.8691 0.2151 19 6 2.4553 -4.3627 -0.1933 20 7 2.6285 -4.3478 -1.6614 21 6 1.9337 -5.4818 -2.2851 22 6 2.1152 -3.0646 -2.1835 23 1 2.9122 -2.5296 -2.6999 24 6 0.9658 -3.3126 -3.1261 25 6 -0.2195 -3.8603 -2.6590 26 6 -1.2498 -4.0713 -3.5622 27 6 -1.0625 -3.7317 -4.8890 28 7 0.0786 -3.2127 -5.2977 29 6 1.0778 -2.9924 -4.4655 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3634 0.5138 0.8900 33 1 3.0797 1.3444 -0.1083 34 1 1.5610 1.9273 -0.8309 35 1 1.9439 3.1011 1.2831 36 1 0.5532 2.0057 1.4691 37 1 2.3415 3.0045 3.6955 38 1 0.9512 1.9088 3.8809 39 1 1.8237 2.8337 7.3373 40 1 1.5611 -0.3872 -2.0628 41 1 3.0797 -0.6611 -1.1757 42 1 3.4171 -2.4536 0.2839 43 1 1.8710 -2.7361 1.1522 44 1 3.2988 -4.8620 0.2834 45 1 1.5208 -4.8564 0.0735 46 1 0.9011 -5.5112 -1.9371 47 1 1.9486 -5.3656 -3.3688 48 1 2.4357 -6.4101 -2.0123 49 1 -0.3372 -4.1162 -1.6164 50 1 -2.1866 -4.4964 -3.2335 51 1 -1.8601 -3.8933 -5.5990 52 1 1.9959 -2.5611 -4.8362 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000339103529.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:38:19 Heat of formation + Delta-G solvation = -11.953634 kcal Electronic energy + Delta-G solvation = -29335.914463 eV Core-core repulsion = 25527.920049 eV Total energy + Delta-G solvation = -3807.994415 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.93510 -39.95617 -39.01360 -37.59308 -34.91133 -33.83424 -33.48999 -32.74908 -30.87482 -29.48418 -28.82867 -28.04072 -26.55400 -24.76962 -24.58454 -24.41339 -23.60565 -22.14659 -21.30974 -20.73481 -18.58988 -18.25168 -17.57804 -17.44158 -17.34537 -16.84422 -16.46137 -16.34165 -15.88454 -15.82818 -15.55751 -15.42408 -15.07499 -14.79719 -14.51928 -14.33583 -14.25261 -14.00857 -13.67435 -13.59572 -13.46556 -13.14345 -12.99957 -12.77773 -12.70800 -12.59297 -12.50779 -12.47587 -12.20563 -12.14872 -12.07917 -11.87097 -11.59239 -11.44123 -11.23125 -10.82872 -10.64972 -10.43971 -10.15159 -9.99656 -9.28507 -9.13963 -8.29918 -6.41614 0.11479 0.28804 1.40506 1.45411 1.53675 2.36286 2.74808 2.86360 3.03715 3.14469 3.25876 3.38723 3.63675 3.70435 3.82021 3.88780 3.98211 4.01079 4.13578 4.18825 4.24990 4.31255 4.35363 4.42629 4.46917 4.48841 4.51579 4.57387 4.59262 4.62534 4.69117 4.77038 4.82640 4.85630 4.86226 4.91017 4.96225 4.99057 5.06694 5.10860 5.13233 5.20994 5.24497 5.29798 5.42394 5.57576 5.73471 5.90752 5.99697 6.03770 6.13294 6.20549 6.59459 6.88749 7.00994 7.30531 8.82281 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.016596 B = 0.002484 C = 0.002293 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1686.743692 B =11269.333993 C =12208.746538 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.546 5.546 3 C 0.071 3.929 4 C 0.057 3.943 5 O -0.392 6.392 6 C 0.210 3.790 7 C -0.543 4.543 8 H 0.061 0.939 9 C 0.005 3.995 10 N -0.932 5.932 11 Si 0.981 3.019 12 H -0.265 1.265 13 H -0.276 1.276 14 H -0.265 1.265 15 C 0.073 3.927 16 C -0.087 4.087 17 H 0.079 0.921 18 C -0.109 4.109 19 C 0.041 3.959 20 N -0.526 5.526 21 C 0.019 3.981 22 C 0.124 3.876 23 H 0.099 0.901 24 C -0.142 4.142 25 C -0.072 4.072 26 C -0.169 4.169 27 C 0.087 3.913 28 N -0.509 5.509 29 C 0.097 3.903 30 H 0.033 0.967 31 H 0.073 0.927 32 H 0.052 0.948 33 H 0.080 0.920 34 H 0.067 0.933 35 H 0.044 0.956 36 H 0.037 0.963 37 H -0.018 1.018 38 H -0.020 1.020 39 H 0.270 0.730 40 H 0.040 0.960 41 H 0.076 0.924 42 H 0.066 0.934 43 H 0.065 0.935 44 H 0.083 0.917 45 H 0.052 0.948 46 H 0.040 0.960 47 H 0.061 0.939 48 H 0.071 0.929 49 H 0.134 0.866 50 H 0.159 0.841 51 H 0.176 0.824 52 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.332 -14.954 -22.607 27.624 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.271 5.271 3 C -0.057 4.057 4 C -0.020 4.020 5 O -0.311 6.311 6 C 0.135 3.865 7 C -0.580 4.580 8 H 0.079 0.921 9 C -0.193 4.193 10 N -0.572 5.572 11 Si 0.804 3.196 12 H -0.190 1.190 13 H -0.200 1.200 14 H -0.190 1.190 15 C -0.055 4.055 16 C -0.107 4.107 17 H 0.097 0.903 18 C -0.147 4.147 19 C -0.086 4.086 20 N -0.249 5.249 21 C -0.129 4.129 22 C 0.015 3.985 23 H 0.116 0.884 24 C -0.145 4.145 25 C -0.098 4.098 26 C -0.188 4.188 27 C -0.070 4.070 28 N -0.218 5.218 29 C -0.060 4.060 30 H 0.052 0.948 31 H 0.091 0.909 32 H 0.071 0.929 33 H 0.098 0.902 34 H 0.084 0.916 35 H 0.062 0.938 36 H 0.055 0.945 37 H -0.001 1.001 38 H -0.002 1.002 39 H 0.079 0.921 40 H 0.058 0.942 41 H 0.095 0.905 42 H 0.085 0.915 43 H 0.083 0.917 44 H 0.102 0.898 45 H 0.070 0.930 46 H 0.059 0.941 47 H 0.080 0.920 48 H 0.089 0.911 49 H 0.152 0.848 50 H 0.176 0.824 51 H 0.193 0.807 52 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -4.466 -15.086 -23.068 27.922 hybrid contribution -1.197 0.526 1.315 1.855 sum -5.663 -14.560 -21.752 26.781 Atomic orbital electron populations 1.22389 0.87413 1.02110 1.00162 1.61759 1.08039 1.13634 1.43639 1.22042 1.01010 0.88530 0.94114 1.22592 0.95962 0.95249 0.88217 1.87900 1.70425 1.57517 1.15272 1.19760 0.93788 0.92347 0.80584 1.21342 1.29128 1.15806 0.91759 0.92078 1.25955 0.96312 0.96253 1.00777 1.70063 1.39941 1.28257 1.18932 0.85264 0.78916 0.78650 0.76775 1.18996 1.20049 1.18989 1.22039 1.00243 0.92391 0.90779 1.22418 1.00163 0.94019 0.94079 0.90306 1.22536 1.00579 0.93910 0.97678 1.23146 1.01074 0.96962 0.87463 1.64055 1.54004 1.01796 1.05020 1.22765 0.97020 0.93902 0.99257 1.21405 0.93072 0.90952 0.93084 0.88351 1.21099 0.96366 1.00893 0.96163 1.21596 0.92370 0.95305 1.00539 1.22387 1.00693 1.01371 0.94353 1.23204 0.94850 0.93730 0.95237 1.67725 1.01564 1.13127 1.39375 1.22849 0.97733 0.96210 0.89226 0.94835 0.90852 0.92937 0.90202 0.91559 0.93795 0.94460 1.00059 1.00197 0.92127 0.94190 0.90511 0.91548 0.91660 0.89820 0.92980 0.94144 0.92018 0.91051 0.84814 0.82374 0.80718 0.82024 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.69 9.14 127.69 1.17 1.86 16 2 N -0.55 -15.24 4.58 -922.46 -4.22 -19.46 16 3 C 0.07 2.04 5.34 86.30 0.46 2.50 16 4 C 0.06 2.14 5.99 71.98 0.43 2.57 16 5 O -0.39 -19.44 10.27 -148.98 -1.53 -20.97 16 6 C 0.21 12.07 5.69 71.24 0.41 12.47 16 7 C -0.54 -32.83 9.43 25.60 0.24 -32.59 16 8 H 0.06 3.66 7.81 -2.91 -0.02 3.64 16 9 C 0.01 0.30 5.46 84.66 0.46 0.77 16 10 N -0.93 -56.76 13.29 21.45 0.28 -56.48 16 11 Si 0.98 44.85 29.54 68.60 2.03 46.87 16 12 H -0.27 -11.66 7.11 99.48 0.71 -10.96 16 13 H -0.28 -12.01 7.11 99.48 0.71 -11.30 16 14 H -0.27 -11.65 7.11 99.48 0.71 -10.95 16 15 C 0.07 1.60 4.25 86.30 0.37 1.97 16 16 C -0.09 -1.73 2.26 -9.62 -0.02 -1.75 16 17 H 0.08 1.58 4.77 -2.39 -0.01 1.57 16 18 C -0.11 -2.51 6.40 31.98 0.20 -2.30 16 19 C 0.04 0.78 6.73 86.77 0.58 1.36 16 20 N -0.53 -9.64 5.46 -890.18 -4.86 -14.50 16 21 C 0.02 0.29 8.23 127.69 1.05 1.34 16 22 C 0.12 2.15 3.26 44.46 0.14 2.29 16 23 H 0.10 1.70 7.62 -2.39 -0.02 1.68 16 24 C -0.14 -2.30 3.08 -19.77 -0.06 -2.36 16 25 C -0.07 -1.04 6.41 22.47 0.14 -0.90 16 26 C -0.17 -2.08 10.11 22.36 0.23 -1.85 16 27 C 0.09 1.24 11.18 84.69 0.95 2.19 16 28 N -0.51 -9.59 10.36 -195.84 -2.03 -11.62 16 29 C 0.10 1.67 10.76 84.67 0.91 2.58 16 30 H 0.03 0.73 8.14 -2.38 -0.02 0.71 16 31 H 0.07 1.68 6.22 -2.39 -0.01 1.66 16 32 H 0.05 1.54 6.37 -2.39 -0.02 1.53 16 33 H 0.08 2.31 7.93 -2.39 -0.02 2.29 16 34 H 0.07 1.54 8.12 -2.38 -0.02 1.52 16 35 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 36 H 0.04 1.38 6.34 -2.39 -0.02 1.37 16 37 H -0.02 -1.09 8.14 -2.39 -0.02 -1.11 16 38 H -0.02 -1.19 8.14 -2.39 -0.02 -1.20 16 39 H 0.27 15.25 8.31 -92.71 -0.77 14.48 16 40 H 0.04 0.79 8.12 -2.39 -0.02 0.77 16 41 H 0.08 1.71 7.85 -2.39 -0.02 1.69 16 42 H 0.07 1.72 7.98 -2.38 -0.02 1.70 16 43 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 44 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 45 H 0.05 0.91 7.64 -2.39 -0.02 0.89 16 46 H 0.04 0.59 5.08 -2.38 -0.01 0.57 16 47 H 0.06 1.02 6.95 -2.39 -0.02 1.01 16 48 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 49 H 0.13 1.83 6.87 -2.91 -0.02 1.81 16 50 H 0.16 1.12 8.06 -2.91 -0.02 1.10 16 51 H 0.18 1.56 8.06 -2.91 -0.02 1.54 16 52 H 0.16 2.35 7.98 -2.91 -0.02 2.32 16 Total: -1.00 -70.03 403.60 -1.78 -71.81 By element: Atomic # 1 Polarization: 13.32 SS G_CDS: 0.88 Total: 14.21 kcal Atomic # 6 Polarization: -17.53 SS G_CDS: 7.67 Total: -9.86 kcal Atomic # 7 Polarization: -91.24 SS G_CDS: -10.82 Total: -102.06 kcal Atomic # 8 Polarization: -19.44 SS G_CDS: -1.53 Total: -20.97 kcal Atomic # 14 Polarization: 44.85 SS G_CDS: 2.03 Total: 46.87 kcal Total: -70.03 -1.78 -71.81 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339103529.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.856 kcal (2) G-P(sol) polarization free energy of solvation -70.032 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.176 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.777 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.809 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.954 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds