Wall clock time and date at job start Tue Mar 31 2020 18:36:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.21278 * 119.99567 * 2 1 4 4 N 1.34773 * 120.00200 * 179.97438 * 2 1 3 5 5 C 1.47116 * 120.89905 * 28.48842 * 4 2 1 6 6 C 1.53243 * 108.49628 * 128.92520 * 5 4 2 7 7 N 1.46895 * 109.38762 * 53.87537 * 6 5 4 8 8 C 1.46900 * 110.99896 * 172.74627 * 7 6 5 9 9 C 1.52998 * 109.46833 * 173.51362 * 8 7 6 10 10 H 1.08994 * 109.47475 * 306.05819 * 9 8 7 11 11 C 1.47198 * 109.46977 * 66.05759 * 9 8 7 12 12 N 7.14116 * 129.11445 * 168.01235 * 2 1 3 13 13 C 1.53004 * 109.47073 * 186.05635 * 9 8 7 14 14 C 1.50702 * 109.47161 * 175.00489 * 13 9 8 15 15 H 1.07992 * 119.99934 * 359.97438 * 14 13 9 16 16 C 1.37876 * 119.99645 * 180.02562 * 14 13 9 17 17 N 1.31514 * 120.00358 * 359.97438 * 16 14 13 18 18 Si 1.86803 * 119.99820 * 179.97438 * 16 14 13 19 19 H 1.48500 * 109.46900 * 59.99755 * 18 16 14 20 20 H 1.48496 * 109.47092 * 180.02562 * 18 16 14 21 21 H 1.48503 * 109.47085 * 299.99916 * 18 16 14 22 22 C 1.46927 * 111.27099 * 296.89836 * 7 6 5 23 23 C 1.46942 * 120.89980 * 208.46804 * 4 2 1 24 24 C 1.52872 * 109.45283 * 111.24028 * 23 4 2 25 25 C 1.53029 * 109.45747 * 299.65331 * 24 23 4 26 26 C 1.52993 * 109.45257 * 300.14326 * 25 24 23 27 27 C 1.52997 * 109.51269 * 60.04206 * 26 25 24 28 28 C 1.52835 * 109.49978 * 350.92391 * 23 4 2 29 29 H 1.08999 * 109.47641 * 275.03893 * 1 2 3 30 30 H 1.08996 * 109.47565 * 35.04047 * 1 2 3 31 31 H 1.08999 * 109.46987 * 155.04232 * 1 2 3 32 32 H 1.09006 * 109.63253 * 9.22561 * 5 4 2 33 33 H 1.08993 * 109.63511 * 248.62907 * 5 4 2 34 34 H 1.08998 * 109.48254 * 293.89567 * 6 5 4 35 35 H 1.09004 * 109.48161 * 173.84375 * 6 5 4 36 36 H 1.08998 * 109.46849 * 293.51699 * 8 7 6 37 37 H 1.09004 * 109.46743 * 53.51740 * 8 7 6 38 38 H 1.08999 * 109.46903 * 295.00118 * 13 9 8 39 39 H 1.08996 * 109.47141 * 55.00012 * 13 9 8 40 40 H 0.97000 * 120.00091 * 179.97438 * 17 16 14 41 41 H 1.09005 * 109.49423 * 182.85349 * 22 7 6 42 42 H 1.09003 * 109.49742 * 302.93574 * 22 7 6 43 43 H 1.08998 * 109.47241 * 59.65081 * 24 23 4 44 44 H 1.09000 * 109.47105 * 179.65393 * 24 23 4 45 45 H 1.08994 * 109.47159 * 180.14868 * 25 24 23 46 46 H 1.08996 * 109.47478 * 60.14177 * 25 24 23 47 47 H 1.08994 * 109.47092 * 300.03044 * 26 25 24 48 48 H 1.09008 * 109.45550 * 180.02562 * 26 25 24 49 49 H 1.09003 * 109.47337 * 179.97438 * 27 26 25 50 50 H 1.09006 * 109.47395 * 59.98627 * 27 26 25 51 51 H 1.09000 * 109.46983 * 180.34726 * 28 23 4 52 52 H 1.08997 * 109.47332 * 300.34700 * 28 23 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1133 1.0503 0.0000 4 7 2.1809 -1.1671 0.0005 5 6 1.5978 -2.3765 -0.6011 6 6 2.6208 -2.9792 -1.5698 7 7 3.8937 -3.1883 -0.8670 8 6 4.8467 -3.9216 -1.7108 9 6 6.2068 -3.9790 -1.0125 10 1 6.5234 -2.9696 -0.7501 11 6 6.0969 -4.7920 0.2097 12 7 6.0122 -5.4199 1.1508 13 6 7.2367 -4.6083 -1.9528 14 6 8.6003 -4.5534 -1.3134 15 1 8.7204 -4.1133 -0.3346 16 6 9.6946 -5.0641 -1.9787 17 7 9.5485 -5.5996 -3.1710 18 14 11.3850 -4.9955 -1.1865 19 1 11.3619 -5.7455 0.0949 20 1 12.3847 -5.6053 -2.0997 21 1 11.7521 -3.5804 -0.9254 22 6 4.4661 -1.9144 -0.4107 23 6 3.5181 -1.2661 0.6016 24 6 3.4467 -2.1261 1.8634 25 6 2.4901 -1.4794 2.8676 26 6 2.9975 -0.0815 3.2271 27 6 3.0659 0.7780 1.9633 28 6 4.0220 0.1320 0.9581 29 1 -0.3634 0.0903 1.0236 30 1 -0.3634 0.8413 -0.5900 31 1 -0.3633 -0.9317 -0.4336 32 1 0.6897 -2.1141 -1.1440 33 1 1.3645 -3.0987 0.1812 34 1 2.7750 -2.2975 -2.4062 35 1 2.2501 -3.9342 -1.9422 36 1 4.4803 -4.9346 -1.8767 37 1 4.9512 -3.4115 -2.6684 38 1 6.9669 -5.6468 -2.1444 39 1 7.2540 -4.0579 -2.8934 40 1 10.3184 -5.9586 -3.6391 41 1 5.4317 -2.0976 0.0609 42 1 4.5980 -1.2486 -1.2636 43 1 3.0842 -3.1210 1.6051 44 1 4.4396 -2.2048 2.3062 45 1 2.4410 -2.0910 3.7685 46 1 1.4966 -1.4029 2.4258 47 1 3.9911 -0.1580 3.6684 48 1 2.3163 0.3791 3.9428 49 1 3.4270 1.7739 2.2202 50 1 2.0722 0.8548 1.5218 51 1 5.0165 0.0586 1.3982 52 1 4.0680 0.7426 0.0563 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000376201223.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:36:13 Heat of formation + Delta-G solvation = 37.341849 kcal Electronic energy + Delta-G solvation = -31050.328096 eV Core-core repulsion = 27244.471294 eV Total energy + Delta-G solvation = -3805.856802 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.71313 -38.76425 -37.12790 -36.21706 -34.68522 -33.48678 -32.06979 -31.68618 -30.55713 -29.80608 -28.15064 -26.56692 -25.63122 -23.22923 -22.77195 -22.23280 -21.69868 -21.03533 -20.33653 -18.48905 -17.14383 -16.78993 -16.50355 -16.01960 -15.77148 -15.37587 -15.15645 -14.82244 -14.53327 -14.45326 -14.39899 -14.07668 -13.59605 -13.33533 -13.06522 -12.86487 -12.77141 -12.45393 -12.36224 -12.28939 -12.11530 -12.07372 -11.99157 -11.73501 -11.55724 -11.47281 -11.36611 -11.23160 -11.06384 -10.91476 -10.66797 -10.57161 -10.31145 -10.15127 -10.08932 -9.74838 -9.57725 -9.40684 -9.25443 -8.54263 -8.46641 -8.14835 -6.11989 -4.15480 2.29063 2.84198 3.29836 3.34119 3.37738 3.67480 3.76162 3.86847 4.36205 4.39281 4.66211 4.69891 4.76148 4.83044 4.87277 4.91076 5.02014 5.08476 5.10848 5.13734 5.25920 5.26179 5.30797 5.38964 5.48187 5.52720 5.56732 5.61416 5.64196 5.66172 5.72871 5.77479 5.82856 5.85577 5.97728 6.00809 6.14681 6.19121 6.20566 6.32374 6.37054 6.41109 6.45172 6.52833 6.67244 7.03356 7.05919 7.37941 7.38678 7.48351 7.82602 7.93328 8.19786 8.52621 8.88762 9.50256 10.98821 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.017385 B = 0.003196 C = 0.003037 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1610.234124 B = 8758.322082 C = 9218.635838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.506 3.494 3 O -0.504 6.504 4 N -0.614 5.614 5 C 0.117 3.883 6 C 0.041 3.959 7 N -0.537 5.537 8 C 0.064 3.936 9 C 0.002 3.998 10 H 0.102 0.898 11 C 0.253 3.747 12 N -0.474 5.474 13 C 0.033 3.967 14 C -0.528 4.528 15 H 0.056 0.944 16 C 0.064 3.936 17 N -0.891 5.891 18 Si 0.891 3.109 19 H -0.276 1.276 20 H -0.286 1.286 21 H -0.275 1.275 22 C 0.041 3.959 23 C 0.188 3.812 24 C -0.114 4.114 25 C -0.114 4.114 26 C -0.126 4.126 27 C -0.151 4.151 28 C -0.107 4.107 29 H 0.092 0.908 30 H 0.088 0.912 31 H 0.080 0.920 32 H 0.085 0.915 33 H 0.074 0.926 34 H 0.040 0.960 35 H 0.088 0.912 36 H 0.083 0.917 37 H 0.054 0.946 38 H 0.026 0.974 39 H 0.037 0.963 40 H 0.263 0.737 41 H 0.095 0.905 42 H 0.043 0.957 43 H 0.077 0.923 44 H 0.069 0.931 45 H 0.057 0.943 46 H 0.055 0.945 47 H 0.055 0.945 48 H 0.052 0.948 49 H 0.052 0.948 50 H 0.112 0.888 51 H 0.058 0.942 52 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.710 10.613 4.321 23.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.297 3.703 3 O -0.381 6.381 4 N -0.349 5.349 5 C -0.006 4.006 6 C -0.087 4.087 7 N -0.261 5.261 8 C -0.065 4.065 9 C -0.020 4.020 10 H 0.120 0.880 11 C -0.064 4.064 12 N -0.150 5.150 13 C -0.006 4.006 14 C -0.566 4.566 15 H 0.074 0.926 16 C -0.139 4.139 17 N -0.530 5.530 18 Si 0.719 3.281 19 H -0.202 1.202 20 H -0.212 1.212 21 H -0.200 1.200 22 C -0.088 4.088 23 C 0.104 3.896 24 C -0.153 4.153 25 C -0.152 4.152 26 C -0.164 4.164 27 C -0.188 4.188 28 C -0.145 4.145 29 H 0.110 0.890 30 H 0.107 0.893 31 H 0.099 0.901 32 H 0.103 0.897 33 H 0.093 0.907 34 H 0.058 0.942 35 H 0.106 0.894 36 H 0.101 0.899 37 H 0.072 0.928 38 H 0.045 0.955 39 H 0.055 0.945 40 H 0.073 0.927 41 H 0.113 0.887 42 H 0.062 0.938 43 H 0.096 0.904 44 H 0.088 0.912 45 H 0.075 0.925 46 H 0.074 0.926 47 H 0.074 0.926 48 H 0.071 0.929 49 H 0.071 0.929 50 H 0.129 0.871 51 H 0.077 0.923 52 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -20.523 9.855 5.996 23.543 hybrid contribution 1.346 0.498 -0.663 1.581 sum -19.177 10.353 5.333 22.436 Atomic orbital electron populations 1.22096 0.92727 1.04564 1.04684 1.20329 0.90099 0.83089 0.76826 1.90668 1.70370 1.32518 1.44581 1.47952 1.18239 1.09390 1.59339 1.21801 0.95697 0.86663 0.96400 1.22446 0.90679 1.00692 0.94929 1.62003 1.04047 1.19767 1.40304 1.22250 0.90702 0.99175 0.94323 1.19383 0.96046 0.98023 0.88500 0.88030 1.28745 0.90881 0.93111 0.93670 1.80932 1.10868 1.10683 1.12550 1.19161 0.91365 0.96598 0.93457 1.21083 0.92205 1.39953 1.03332 0.92585 1.24940 0.99211 0.94897 0.94805 1.69923 1.30897 1.39315 1.12853 0.86662 0.83674 0.78506 0.79306 1.20181 1.21168 1.20032 1.22669 0.98421 0.89799 0.97869 1.20547 0.81019 0.95935 0.92102 1.21733 1.00313 0.99286 0.93929 1.21476 0.98948 0.96138 0.98623 1.21680 1.00740 0.95849 0.98136 1.22806 1.04226 0.97624 0.94094 1.21770 0.98278 0.93751 1.00713 0.88957 0.89331 0.90132 0.89699 0.90729 0.94190 0.89383 0.89856 0.92823 0.95517 0.94502 0.92710 0.88720 0.93834 0.90416 0.91202 0.92465 0.92578 0.92628 0.92887 0.92908 0.87090 0.92298 0.89793 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.14 10.10 36.01 0.36 -0.77 16 2 C 0.51 5.09 5.16 -10.99 -0.06 5.03 16 3 O -0.50 -6.59 11.33 5.56 0.06 -6.53 16 4 N -0.61 -6.07 2.01 -158.00 -0.32 -6.39 16 5 C 0.12 0.93 5.83 -3.58 -0.02 0.91 16 6 C 0.04 0.39 5.60 -3.70 -0.02 0.37 16 7 N -0.54 -6.57 3.98 -234.39 -0.93 -7.50 16 8 C 0.06 0.89 4.53 -3.82 -0.02 0.87 16 9 C 0.00 0.04 1.75 -93.41 -0.16 -0.12 16 10 H 0.10 1.73 5.79 -51.93 -0.30 1.43 16 11 C 0.25 5.06 13.61 -20.81 -0.28 4.78 16 12 N -0.47 -10.29 18.53 42.10 0.78 -9.51 16 13 C 0.03 0.74 4.42 -27.88 -0.12 0.62 16 14 C -0.53 -13.87 8.60 -34.44 -0.30 -14.17 16 15 H 0.06 1.47 7.59 -52.49 -0.40 1.07 16 16 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 17 N -0.89 -25.30 13.29 55.43 0.74 -24.56 16 18 Si 0.89 21.20 29.54 -169.99 -5.02 16.17 16 19 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 20 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 21 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 22 C 0.04 0.52 3.84 -3.76 -0.01 0.50 16 23 C 0.19 2.19 0.67 -131.68 -0.09 2.10 16 24 C -0.11 -1.36 4.60 -26.78 -0.12 -1.49 16 25 C -0.11 -1.21 5.73 -26.72 -0.15 -1.36 16 26 C -0.13 -1.37 5.92 -26.74 -0.16 -1.52 16 27 C -0.15 -1.79 4.67 -26.72 -0.12 -1.91 16 28 C -0.11 -1.33 4.21 -26.80 -0.11 -1.45 16 29 H 0.09 0.51 8.14 -51.93 -0.42 0.08 16 30 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.08 0.36 5.87 -51.93 -0.30 0.05 16 32 H 0.08 0.46 6.08 -51.93 -0.32 0.14 16 33 H 0.07 0.60 7.61 -51.93 -0.40 0.21 16 34 H 0.04 0.39 8.14 -51.93 -0.42 -0.03 16 35 H 0.09 0.72 8.11 -51.93 -0.42 0.30 16 36 H 0.08 1.16 8.13 -51.93 -0.42 0.74 16 37 H 0.05 0.71 8.12 -51.93 -0.42 0.29 16 38 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 40 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 41 H 0.09 1.32 5.56 -51.93 -0.29 1.03 16 42 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 43 H 0.08 1.01 7.06 -51.93 -0.37 0.64 16 44 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 45 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 46 H 0.06 0.56 7.34 -51.93 -0.38 0.18 16 47 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 48 H 0.05 0.53 8.14 -51.92 -0.42 0.10 16 49 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 50 H 0.11 1.35 3.47 -57.87 -0.20 1.15 16 51 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 52 H 0.08 1.18 6.62 -51.93 -0.34 0.83 16 LS Contribution 388.04 15.07 5.85 5.85 Total: -1.00 -30.56 388.04 -9.10 -39.67 By element: Atomic # 1 Polarization: 7.55 SS G_CDS: -8.77 Total: -1.22 kcal Atomic # 6 Polarization: -4.47 SS G_CDS: -1.49 Total: -5.96 kcal Atomic # 7 Polarization: -48.24 SS G_CDS: 0.26 Total: -47.97 kcal Atomic # 8 Polarization: -6.59 SS G_CDS: 0.06 Total: -6.53 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.17 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -30.56 -9.10 -39.67 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000376201223.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.007 kcal (2) G-P(sol) polarization free energy of solvation -30.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.446 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.104 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.665 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.342 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds