Wall clock time and date at job start Tue Mar 31 2020 18:36:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.21278 * 119.99567 * 2 1 4 4 N 1.34773 * 120.00200 * 179.97438 * 2 1 3 5 5 C 1.47116 * 120.89905 * 28.48842 * 4 2 1 6 6 C 1.53243 * 108.49628 * 128.92520 * 5 4 2 7 7 N 1.46895 * 109.38762 * 53.87537 * 6 5 4 8 8 C 1.46900 * 110.99896 * 172.74627 * 7 6 5 9 9 C 1.52998 * 109.46833 * 173.51362 * 8 7 6 10 10 H 1.08994 * 109.47475 * 306.05819 * 9 8 7 11 11 C 1.47198 * 109.46977 * 66.05759 * 9 8 7 12 12 N 7.14116 * 129.11445 * 168.01235 * 2 1 3 13 13 C 1.53004 * 109.47073 * 186.05635 * 9 8 7 14 14 C 1.50702 * 109.47161 * 175.00489 * 13 9 8 15 15 H 1.07992 * 119.99934 * 359.97438 * 14 13 9 16 16 C 1.37876 * 119.99645 * 180.02562 * 14 13 9 17 17 N 1.31514 * 120.00358 * 359.97438 * 16 14 13 18 18 Si 1.86803 * 119.99820 * 179.97438 * 16 14 13 19 19 H 1.48500 * 109.46900 * 59.99755 * 18 16 14 20 20 H 1.48496 * 109.47092 * 180.02562 * 18 16 14 21 21 H 1.48503 * 109.47085 * 299.99916 * 18 16 14 22 22 C 1.46927 * 111.27099 * 296.89836 * 7 6 5 23 23 C 1.46942 * 120.89980 * 208.46804 * 4 2 1 24 24 C 1.52872 * 109.45283 * 111.24028 * 23 4 2 25 25 C 1.53029 * 109.45747 * 299.65331 * 24 23 4 26 26 C 1.52993 * 109.45257 * 300.14326 * 25 24 23 27 27 C 1.52997 * 109.51269 * 60.04206 * 26 25 24 28 28 C 1.52835 * 109.49978 * 350.92391 * 23 4 2 29 29 H 1.08999 * 109.47641 * 275.03893 * 1 2 3 30 30 H 1.08996 * 109.47565 * 35.04047 * 1 2 3 31 31 H 1.08999 * 109.46987 * 155.04232 * 1 2 3 32 32 H 1.09006 * 109.63253 * 9.22561 * 5 4 2 33 33 H 1.08993 * 109.63511 * 248.62907 * 5 4 2 34 34 H 1.08998 * 109.48254 * 293.89567 * 6 5 4 35 35 H 1.09004 * 109.48161 * 173.84375 * 6 5 4 36 36 H 1.08998 * 109.46849 * 293.51699 * 8 7 6 37 37 H 1.09004 * 109.46743 * 53.51740 * 8 7 6 38 38 H 1.08999 * 109.46903 * 295.00118 * 13 9 8 39 39 H 1.08996 * 109.47141 * 55.00012 * 13 9 8 40 40 H 0.97000 * 120.00091 * 179.97438 * 17 16 14 41 41 H 1.09005 * 109.49423 * 182.85349 * 22 7 6 42 42 H 1.09003 * 109.49742 * 302.93574 * 22 7 6 43 43 H 1.08998 * 109.47241 * 59.65081 * 24 23 4 44 44 H 1.09000 * 109.47105 * 179.65393 * 24 23 4 45 45 H 1.08994 * 109.47159 * 180.14868 * 25 24 23 46 46 H 1.08996 * 109.47478 * 60.14177 * 25 24 23 47 47 H 1.08994 * 109.47092 * 300.03044 * 26 25 24 48 48 H 1.09008 * 109.45550 * 180.02562 * 26 25 24 49 49 H 1.09003 * 109.47337 * 179.97438 * 27 26 25 50 50 H 1.09006 * 109.47395 * 59.98627 * 27 26 25 51 51 H 1.09000 * 109.46983 * 180.34726 * 28 23 4 52 52 H 1.08997 * 109.47332 * 300.34700 * 28 23 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1133 1.0503 0.0000 4 7 2.1809 -1.1671 0.0005 5 6 1.5978 -2.3765 -0.6011 6 6 2.6208 -2.9792 -1.5698 7 7 3.8937 -3.1883 -0.8670 8 6 4.8467 -3.9216 -1.7108 9 6 6.2068 -3.9790 -1.0125 10 1 6.5234 -2.9696 -0.7501 11 6 6.0969 -4.7920 0.2097 12 7 6.0122 -5.4199 1.1508 13 6 7.2367 -4.6083 -1.9528 14 6 8.6003 -4.5534 -1.3134 15 1 8.7204 -4.1133 -0.3346 16 6 9.6946 -5.0641 -1.9787 17 7 9.5485 -5.5996 -3.1710 18 14 11.3850 -4.9955 -1.1865 19 1 11.3619 -5.7455 0.0949 20 1 12.3847 -5.6053 -2.0997 21 1 11.7521 -3.5804 -0.9254 22 6 4.4661 -1.9144 -0.4107 23 6 3.5181 -1.2661 0.6016 24 6 3.4467 -2.1261 1.8634 25 6 2.4901 -1.4794 2.8676 26 6 2.9975 -0.0815 3.2271 27 6 3.0659 0.7780 1.9633 28 6 4.0220 0.1320 0.9581 29 1 -0.3634 0.0903 1.0236 30 1 -0.3634 0.8413 -0.5900 31 1 -0.3633 -0.9317 -0.4336 32 1 0.6897 -2.1141 -1.1440 33 1 1.3645 -3.0987 0.1812 34 1 2.7750 -2.2975 -2.4062 35 1 2.2501 -3.9342 -1.9422 36 1 4.4803 -4.9346 -1.8767 37 1 4.9512 -3.4115 -2.6684 38 1 6.9669 -5.6468 -2.1444 39 1 7.2540 -4.0579 -2.8934 40 1 10.3184 -5.9586 -3.6391 41 1 5.4317 -2.0976 0.0609 42 1 4.5980 -1.2486 -1.2636 43 1 3.0842 -3.1210 1.6051 44 1 4.4396 -2.2048 2.3062 45 1 2.4410 -2.0910 3.7685 46 1 1.4966 -1.4029 2.4258 47 1 3.9911 -0.1580 3.6684 48 1 2.3163 0.3791 3.9428 49 1 3.4270 1.7739 2.2202 50 1 2.0722 0.8548 1.5218 51 1 5.0165 0.0586 1.3982 52 1 4.0680 0.7426 0.0563 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000376201223.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:36:12 Heat of formation + Delta-G solvation = 20.386163 kcal Electronic energy + Delta-G solvation = -31051.063350 eV Core-core repulsion = 27244.471294 eV Total energy + Delta-G solvation = -3806.592056 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.57479 -39.80637 -38.25424 -37.40108 -35.92908 -35.21363 -33.33950 -32.89189 -31.49604 -30.59521 -29.21479 -27.86264 -26.85410 -24.49606 -23.83465 -23.34930 -23.08125 -21.89946 -21.28029 -19.30371 -18.56859 -18.21958 -17.85638 -16.87891 -16.80761 -16.54787 -16.28839 -16.04158 -15.78823 -15.48662 -15.37967 -14.90230 -14.79567 -14.57098 -14.28937 -14.10522 -13.80136 -13.71906 -13.61074 -13.25083 -13.17149 -13.11681 -13.05106 -13.00054 -12.85419 -12.67619 -12.60482 -12.49414 -12.44418 -12.25906 -12.22022 -11.82376 -11.71026 -11.36281 -11.19140 -11.12993 -11.02557 -10.64623 -10.56267 -10.25905 -9.45147 -9.06961 -8.21244 -6.29525 1.39564 1.40798 1.47937 1.54252 2.06074 2.07564 2.13749 2.39755 2.85984 3.14235 3.31508 3.57101 3.75179 3.82971 3.94592 4.03608 4.10217 4.20895 4.23389 4.30381 4.33279 4.40040 4.48906 4.52835 4.59798 4.62331 4.65830 4.67866 4.72768 4.74929 4.81787 4.83736 4.88367 4.90827 4.99957 5.04836 5.12463 5.18074 5.23846 5.26072 5.28810 5.42570 5.43571 5.46951 5.58868 5.60292 5.76337 5.78227 5.97247 6.10852 6.19758 6.63888 6.80960 6.91525 7.17682 7.39077 8.89405 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.017385 B = 0.003196 C = 0.003037 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1610.234124 B = 8758.322082 C = 9218.635838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.501 3.499 3 O -0.541 6.541 4 N -0.615 5.615 5 C 0.117 3.883 6 C 0.038 3.962 7 N -0.540 5.540 8 C 0.074 3.926 9 C 0.013 3.987 10 H 0.110 0.890 11 C 0.264 3.736 12 N -0.503 5.503 13 C 0.040 3.960 14 C -0.541 4.541 15 H 0.052 0.948 16 C 0.014 3.986 17 N -0.922 5.922 18 Si 0.946 3.054 19 H -0.280 1.280 20 H -0.281 1.281 21 H -0.265 1.265 22 C 0.044 3.956 23 C 0.194 3.806 24 C -0.107 4.107 25 C -0.108 4.108 26 C -0.124 4.124 27 C -0.147 4.147 28 C -0.104 4.104 29 H 0.105 0.895 30 H 0.093 0.907 31 H 0.105 0.895 32 H 0.120 0.880 33 H 0.080 0.920 34 H 0.039 0.961 35 H 0.106 0.894 36 H 0.088 0.912 37 H 0.064 0.936 38 H 0.005 0.995 39 H 0.032 0.968 40 H 0.265 0.735 41 H 0.076 0.924 42 H 0.036 0.964 43 H 0.071 0.929 44 H 0.048 0.952 45 H 0.061 0.939 46 H 0.069 0.931 47 H 0.045 0.955 48 H 0.066 0.934 49 H 0.042 0.958 50 H 0.117 0.883 51 H 0.048 0.952 52 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.003 10.877 4.509 25.842 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.294 3.706 3 O -0.422 6.422 4 N -0.349 5.349 5 C -0.005 4.005 6 C -0.090 4.090 7 N -0.264 5.264 8 C -0.054 4.054 9 C -0.009 4.009 10 H 0.128 0.872 11 C -0.053 4.053 12 N -0.181 5.181 13 C 0.001 3.999 14 C -0.579 4.579 15 H 0.070 0.930 16 C -0.185 4.185 17 N -0.561 5.561 18 Si 0.771 3.229 19 H -0.206 1.206 20 H -0.206 1.206 21 H -0.190 1.190 22 C -0.085 4.085 23 C 0.109 3.891 24 C -0.146 4.146 25 C -0.146 4.146 26 C -0.161 4.161 27 C -0.184 4.184 28 C -0.142 4.142 29 H 0.123 0.877 30 H 0.112 0.888 31 H 0.123 0.877 32 H 0.138 0.862 33 H 0.098 0.902 34 H 0.057 0.943 35 H 0.125 0.875 36 H 0.106 0.894 37 H 0.082 0.918 38 H 0.023 0.977 39 H 0.050 0.950 40 H 0.073 0.927 41 H 0.094 0.906 42 H 0.054 0.946 43 H 0.089 0.911 44 H 0.067 0.933 45 H 0.080 0.920 46 H 0.088 0.912 47 H 0.064 0.936 48 H 0.085 0.915 49 H 0.061 0.939 50 H 0.133 0.867 51 H 0.067 0.933 52 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -22.841 10.114 6.184 25.734 hybrid contribution 2.063 0.431 -0.745 2.235 sum -20.778 10.545 5.439 23.927 Atomic orbital electron populations 1.22107 0.89175 1.06141 1.05854 1.21100 0.91723 0.82334 0.75459 1.90667 1.71439 1.33723 1.46351 1.48030 1.17405 1.10310 1.59179 1.22004 0.96194 0.85823 0.96457 1.22610 0.89362 1.01889 0.95136 1.62000 1.04631 1.19321 1.40485 1.22081 0.88978 1.00043 0.94330 1.19294 0.97304 0.97367 0.86921 0.87214 1.29103 0.89948 0.92560 0.93646 1.80926 1.11993 1.11608 1.13523 1.18969 0.91289 0.95583 0.94046 1.21501 0.93990 1.39202 1.03206 0.92999 1.25676 1.02605 0.94892 0.95349 1.70013 1.31793 1.40366 1.13974 0.85793 0.80005 0.78862 0.78211 1.20550 1.20596 1.18981 1.22580 0.98121 0.90015 0.97772 1.20315 0.82074 0.94940 0.91812 1.21627 0.99539 0.99083 0.94319 1.21435 0.99033 0.95667 0.98423 1.21660 1.00646 0.96016 0.97826 1.22775 1.04150 0.97174 0.94291 1.21694 0.98170 0.94242 1.00087 0.87665 0.88847 0.87668 0.86179 0.90165 0.94289 0.87545 0.89371 0.91810 0.97664 0.94989 0.92654 0.90594 0.94597 0.91066 0.93313 0.91992 0.91231 0.93575 0.91531 0.93947 0.86655 0.93347 0.91615 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.53 10.10 71.24 0.72 -0.81 16 2 C 0.50 8.98 5.16 87.66 0.45 9.43 16 3 O -0.54 -13.75 11.33 -3.02 -0.03 -13.78 16 4 N -0.61 -10.87 2.01 -772.20 -1.55 -12.43 16 5 C 0.12 1.46 5.83 86.34 0.50 1.96 16 6 C 0.04 0.62 5.60 86.39 0.48 1.10 16 7 N -0.54 -12.52 3.98 -895.48 -3.57 -16.08 16 8 C 0.07 2.01 4.53 86.30 0.39 2.40 16 9 C 0.01 0.45 1.75 -12.60 -0.02 0.43 16 10 H 0.11 3.78 5.79 -2.39 -0.01 3.76 16 11 C 0.26 10.59 13.61 89.46 1.22 11.80 16 12 N -0.50 -21.94 18.53 19.99 0.37 -21.57 16 13 C 0.04 1.83 4.42 29.85 0.13 1.96 16 14 C -0.54 -28.71 8.60 25.60 0.22 -28.49 16 15 H 0.05 2.74 7.59 -2.91 -0.02 2.72 16 16 C 0.01 0.77 5.46 84.65 0.46 1.23 16 17 N -0.92 -52.80 13.29 21.45 0.28 -52.51 16 18 Si 0.95 43.57 29.54 68.60 2.03 45.59 16 19 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 20 H -0.28 -12.60 7.11 99.48 0.71 -11.90 16 21 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 22 C 0.04 1.11 3.84 86.33 0.33 1.44 16 23 C 0.19 4.41 0.67 3.45 0.00 4.41 16 24 C -0.11 -2.49 4.60 30.56 0.14 -2.35 16 25 C -0.11 -2.11 5.73 30.60 0.18 -1.93 16 26 C -0.12 -2.56 5.92 30.59 0.18 -2.38 16 27 C -0.15 -3.45 4.67 30.60 0.14 -3.31 16 28 C -0.10 -2.64 4.21 30.55 0.13 -2.52 16 29 H 0.11 0.73 8.14 -2.39 -0.02 0.71 16 30 H 0.09 0.79 8.14 -2.39 -0.02 0.77 16 31 H 0.10 0.40 5.87 -2.39 -0.01 0.38 16 32 H 0.12 0.69 6.08 -2.38 -0.01 0.67 16 33 H 0.08 0.98 7.61 -2.39 -0.02 0.96 16 34 H 0.04 0.66 8.14 -2.39 -0.02 0.65 16 35 H 0.11 1.38 8.11 -2.38 -0.02 1.36 16 36 H 0.09 2.33 8.13 -2.39 -0.02 2.31 16 37 H 0.06 1.61 8.12 -2.39 -0.02 1.59 16 38 H 0.00 0.25 8.14 -2.39 -0.02 0.23 16 39 H 0.03 1.49 8.14 -2.39 -0.02 1.47 16 40 H 0.26 14.42 8.31 -92.71 -0.77 13.65 16 41 H 0.08 2.17 5.56 -2.38 -0.01 2.16 16 42 H 0.04 0.95 8.14 -2.39 -0.02 0.93 16 43 H 0.07 1.76 7.06 -2.39 -0.02 1.74 16 44 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 45 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 46 H 0.07 1.18 7.34 -2.39 -0.02 1.17 16 47 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 48 H 0.07 1.20 8.14 -2.38 -0.02 1.18 16 49 H 0.04 1.05 8.14 -2.39 -0.02 1.03 16 50 H 0.12 2.68 3.47 -96.47 -0.33 2.35 16 51 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 52 H 0.07 1.91 6.62 -2.39 -0.02 1.90 16 Total: -1.00 -66.89 388.04 3.77 -63.13 By element: Atomic # 1 Polarization: 12.70 SS G_CDS: 0.58 Total: 13.28 kcal Atomic # 6 Polarization: -11.28 SS G_CDS: 5.66 Total: -5.62 kcal Atomic # 7 Polarization: -98.13 SS G_CDS: -4.46 Total: -102.60 kcal Atomic # 8 Polarization: -13.75 SS G_CDS: -0.03 Total: -13.78 kcal Atomic # 14 Polarization: 43.57 SS G_CDS: 2.03 Total: 45.59 kcal Total: -66.89 3.77 -63.13 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000376201223.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.513 kcal (2) G-P(sol) polarization free energy of solvation -66.894 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.620 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.766 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.127 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.386 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds