Wall clock time and date at job start Tue Mar 31 2020 18:16:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46903 * 109.46889 * 2 1 4 4 C 1.46904 * 111.00142 * 66.04957 * 3 2 1 5 5 C 1.52996 * 109.47053 * 196.20883 * 4 3 2 6 6 C 1.46909 * 111.00050 * 189.99871 * 3 2 1 7 7 C 1.50706 * 109.46677 * 75.97040 * 6 3 2 8 8 C 1.38309 * 119.96200 * 264.98020 * 7 6 3 9 9 C 1.38254 * 120.13801 * 179.77018 * 8 7 6 10 10 C 1.38141 * 120.07232 * 0.50856 * 9 8 7 11 11 C 1.38846 * 119.92593 * 359.74272 * 10 9 8 12 12 N 1.39923 * 120.06932 * 179.97438 * 11 10 9 13 13 C 1.34778 * 120.00170 * 323.93635 * 12 11 10 14 14 O 1.21279 * 119.99714 * 4.82016 * 13 12 11 15 15 C 1.50697 * 120.00029 * 184.82230 * 13 12 11 16 16 H 1.09004 * 109.47212 * 319.99843 * 15 13 12 17 17 N 1.46899 * 109.47455 * 199.99955 * 15 13 12 18 18 C 1.52997 * 109.47291 * 79.99616 * 15 13 12 19 19 C 1.52997 * 109.47402 * 185.00093 * 18 15 13 20 20 C 1.50704 * 109.47453 * 180.02562 * 19 18 15 21 21 H 1.08001 * 119.99924 * 0.02562 * 20 19 18 22 22 C 1.37876 * 120.00444 * 179.97438 * 20 19 18 23 23 N 1.31518 * 119.99828 * 0.02562 * 22 20 19 24 24 Si 1.86791 * 120.00283 * 179.97438 * 22 20 19 25 25 H 1.48500 * 109.47033 * 0.02562 * 24 22 20 26 26 H 1.48503 * 109.47084 * 120.00270 * 24 22 20 27 27 H 1.48498 * 109.47383 * 240.00332 * 24 22 20 28 28 C 1.38085 * 119.96476 * 85.25612 * 7 6 3 29 29 H 1.08997 * 109.46677 * 179.97438 * 1 2 3 30 30 H 1.09005 * 109.46947 * 300.00110 * 1 2 3 31 31 H 1.09000 * 109.46595 * 59.99713 * 1 2 3 32 32 H 1.09002 * 109.47349 * 119.99754 * 2 1 3 33 33 H 1.08998 * 109.47065 * 240.00299 * 2 1 3 34 34 H 1.09000 * 109.46386 * 316.20509 * 4 3 2 35 35 H 1.09001 * 109.47169 * 76.20454 * 4 3 2 36 36 H 1.09001 * 109.47390 * 301.37812 * 5 4 3 37 37 H 1.08999 * 109.47284 * 61.37421 * 5 4 3 38 38 H 1.09001 * 109.46982 * 181.37750 * 5 4 3 39 39 H 1.08998 * 109.47002 * 195.97064 * 6 3 2 40 40 H 1.08997 * 109.46983 * 315.97393 * 6 3 2 41 41 H 1.07999 * 119.92972 * 359.97438 * 8 7 6 42 42 H 1.08004 * 119.96560 * 180.22924 * 9 8 7 43 43 H 1.07992 * 120.03335 * 179.72469 * 10 9 8 44 44 H 0.97003 * 119.99751 * 143.93186 * 12 11 10 45 45 H 1.00891 * 110.99652 * 300.00325 * 17 15 13 46 46 H 1.00903 * 110.99457 * 63.95492 * 17 15 13 47 47 H 1.09001 * 109.47599 * 305.00301 * 18 15 13 48 48 H 1.09004 * 109.46800 * 64.99915 * 18 15 13 49 49 H 1.09005 * 109.47474 * 300.00181 * 19 18 15 50 50 H 1.09004 * 109.47288 * 60.00121 * 19 18 15 51 51 H 0.96998 * 119.99999 * 179.97438 * 23 22 20 52 52 H 1.08003 * 120.03421 * 359.95734 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.6702 2.0670 1.2534 5 6 1.8230 3.5784 1.0713 6 6 3.4686 1.4312 -0.2381 7 6 3.7457 1.1831 -1.6986 8 6 4.0480 -0.0933 -2.1371 9 6 4.2982 -0.3259 -3.4768 10 6 4.2573 0.7184 -4.3801 11 6 3.9592 2.0018 -3.9422 12 7 3.9175 3.0619 -4.8545 13 6 4.7834 3.0972 -5.8867 14 8 5.5398 2.1682 -6.0756 15 6 4.8117 4.2909 -6.8060 16 1 3.7924 4.6270 -6.9966 17 7 5.4491 3.9165 -8.0754 18 6 5.6070 5.4213 -6.1499 19 6 5.5312 6.6734 -7.0258 20 6 6.3151 7.7867 -6.3798 21 1 6.8175 7.6178 -5.4388 22 6 6.3918 9.0204 -6.9905 23 7 5.7804 9.2259 -8.1367 24 14 7.3629 10.4004 -6.1895 25 1 7.9510 9.9165 -4.9147 26 1 8.4505 10.8350 -7.1024 27 1 6.4596 11.5466 -5.9147 28 6 3.7032 2.2313 -2.5964 29 1 -0.3632 -1.0277 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3632 0.5139 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 1.8934 -0.5138 -0.8900 34 1 0.6384 1.8353 1.5175 35 1 2.3339 1.7278 2.0488 36 1 2.8489 3.8078 0.7832 37 1 1.1416 3.9213 0.2927 38 1 1.5873 4.0828 2.0084 39 1 3.8519 2.4121 0.0429 40 1 3.9598 0.6640 0.3604 41 1 4.0854 -0.9106 -1.4321 42 1 4.5303 -1.3244 -3.8168 43 1 4.4572 0.5368 -5.4257 44 1 3.2653 3.7714 -4.7440 45 1 6.3957 3.6011 -7.9254 46 1 4.9071 3.2164 -8.5595 47 1 5.1868 5.6388 -5.1680 48 1 6.6479 5.1170 -6.0403 49 1 5.9514 6.4560 -8.0078 50 1 4.4902 6.9777 -7.1354 51 1 5.8340 10.0939 -8.5662 52 1 3.4708 3.2285 -2.2527 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424138779.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:16:56 Heat of formation + Delta-G solvation = -20.369860 kcal Electronic energy + Delta-G solvation = -28339.271115 eV Core-core repulsion = 24530.911745 eV Total energy + Delta-G solvation = -3808.359370 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.63908 -39.29449 -37.86821 -35.35889 -34.79815 -32.83334 -32.32536 -32.07637 -30.20609 -29.95817 -29.05785 -26.44070 -25.67158 -24.07666 -23.37482 -22.49855 -21.85147 -20.82642 -20.28800 -19.75260 -17.71196 -17.08498 -16.40225 -16.12385 -16.05330 -15.84590 -15.54271 -15.27280 -15.04373 -14.67149 -14.35597 -14.29349 -14.12839 -13.71819 -13.54590 -13.23099 -12.84995 -12.81490 -12.50414 -12.34269 -12.22225 -12.09538 -11.97152 -11.89634 -11.64868 -11.58404 -11.38513 -11.14896 -10.92311 -10.90404 -10.69531 -10.55842 -10.33587 -10.05632 -9.82435 -9.40635 -9.00840 -8.88023 -8.65161 -8.41751 -8.25353 -8.14000 -5.95181 -3.97286 1.21661 1.30690 2.63552 3.12885 3.33230 3.40925 3.44766 3.47087 3.89608 4.49046 4.52871 4.59429 4.68755 4.74573 4.81551 4.86999 4.94717 5.03597 5.06870 5.11710 5.14117 5.20623 5.28942 5.34932 5.39724 5.40384 5.45901 5.50828 5.57289 5.63183 5.68414 5.69613 5.76610 5.88549 5.89061 5.98512 6.26719 6.32040 6.38805 6.46272 6.49066 6.61422 6.73066 6.78476 6.99885 7.05066 7.29064 7.48213 7.73077 7.75301 7.94019 8.10855 8.16550 8.46734 9.10764 9.66054 11.15749 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.011756 B = 0.002408 C = 0.002096 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2381.197241 B =11622.723609 C =13354.651037 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.047 3.953 3 N -0.532 5.532 4 C 0.046 3.954 5 C -0.150 4.150 6 C 0.092 3.908 7 C -0.059 4.059 8 C -0.134 4.134 9 C -0.104 4.104 10 C -0.121 4.121 11 C 0.150 3.850 12 N -0.674 5.674 13 C 0.484 3.516 14 O -0.535 6.535 15 C 0.081 3.919 16 H 0.101 0.899 17 N -0.805 5.805 18 C -0.096 4.096 19 C 0.031 3.969 20 C -0.522 4.522 21 H 0.052 0.948 22 C 0.057 3.943 23 N -0.892 5.892 24 Si 0.889 3.111 25 H -0.274 1.274 26 H -0.284 1.284 27 H -0.285 1.285 28 C -0.122 4.122 29 H 0.057 0.943 30 H 0.054 0.946 31 H 0.064 0.936 32 H 0.030 0.970 33 H 0.079 0.921 34 H 0.078 0.922 35 H 0.032 0.968 36 H 0.055 0.945 37 H 0.064 0.936 38 H 0.057 0.943 39 H 0.085 0.915 40 H 0.044 0.956 41 H 0.116 0.884 42 H 0.122 0.878 43 H 0.135 0.865 44 H 0.413 0.587 45 H 0.349 0.651 46 H 0.335 0.665 47 H 0.054 0.946 48 H 0.054 0.946 49 H 0.035 0.965 50 H 0.014 0.986 51 H 0.259 0.741 52 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.710 -20.268 17.025 28.554 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.080 4.080 3 N -0.257 5.257 4 C -0.081 4.081 5 C -0.207 4.207 6 C -0.035 4.035 7 C -0.061 4.061 8 C -0.154 4.154 9 C -0.123 4.123 10 C -0.141 4.141 11 C 0.055 3.945 12 N -0.319 5.319 13 C 0.271 3.729 14 O -0.411 6.411 15 C -0.035 4.035 16 H 0.119 0.881 17 N -0.333 5.333 18 C -0.134 4.134 19 C -0.006 4.006 20 C -0.560 4.560 21 H 0.071 0.929 22 C -0.144 4.144 23 N -0.532 5.532 24 Si 0.717 3.283 25 H -0.199 1.199 26 H -0.210 1.210 27 H -0.211 1.211 28 C -0.143 4.143 29 H 0.076 0.924 30 H 0.073 0.927 31 H 0.083 0.917 32 H 0.048 0.952 33 H 0.097 0.903 34 H 0.096 0.904 35 H 0.050 0.950 36 H 0.074 0.926 37 H 0.083 0.917 38 H 0.076 0.924 39 H 0.104 0.896 40 H 0.062 0.938 41 H 0.134 0.866 42 H 0.140 0.860 43 H 0.153 0.847 44 H 0.250 0.750 45 H 0.163 0.837 46 H 0.147 0.853 47 H 0.073 0.927 48 H 0.072 0.928 49 H 0.054 0.946 50 H 0.032 0.968 51 H 0.069 0.931 52 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -10.501 -19.710 16.102 27.532 hybrid contribution 0.679 -0.243 1.584 1.740 sum -9.821 -19.953 17.686 28.414 Atomic orbital electron populations 1.21816 0.94887 1.01460 1.02479 1.22144 0.96103 0.88908 1.00892 1.62031 1.13052 1.15911 1.34724 1.22164 1.01032 0.95104 0.89838 1.21809 1.02452 0.94607 1.01868 1.21064 0.88107 1.02007 0.92293 1.19397 0.98994 0.92950 0.94730 1.20939 1.02463 0.96149 0.95816 1.20972 0.99571 0.98723 0.93013 1.21248 1.00998 0.90819 1.01083 1.17842 0.99910 0.87763 0.88955 1.43815 1.36557 1.24715 1.26860 1.23056 0.78436 0.90135 0.81290 1.90642 1.40483 1.38131 1.71796 1.21878 1.01692 0.91804 0.88153 0.88117 1.58990 1.07118 1.48307 1.18908 1.21678 0.98018 0.94795 0.98900 1.19024 0.97096 0.89003 0.95477 1.21305 1.31706 0.96242 1.06759 0.92934 1.24993 0.95780 0.98644 0.94951 1.69983 1.43452 1.23219 1.16500 0.86592 0.79954 0.82313 0.79455 1.19860 1.21050 1.21085 1.20756 1.03327 0.99530 0.90726 0.92401 0.92742 0.91731 0.95181 0.90255 0.90418 0.94989 0.92553 0.91703 0.92376 0.89632 0.93769 0.86640 0.86028 0.84738 0.75036 0.83698 0.85341 0.92726 0.92752 0.94619 0.96809 0.93138 0.85651 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.99 9.88 37.16 0.37 -0.62 16 2 C 0.05 0.35 5.50 -3.82 -0.02 0.33 16 3 N -0.53 -4.41 4.38 -236.05 -1.03 -5.44 16 4 C 0.05 0.33 5.55 -3.82 -0.02 0.30 16 5 C -0.15 -1.06 10.00 37.16 0.37 -0.69 16 6 C 0.09 0.80 4.96 -4.97 -0.02 0.77 16 7 C -0.06 -0.62 5.05 -104.65 -0.53 -1.15 16 8 C -0.13 -1.35 8.39 -39.55 -0.33 -1.68 16 9 C -0.10 -1.16 10.04 -39.61 -0.40 -1.56 16 10 C -0.12 -1.62 8.69 -39.39 -0.34 -1.96 16 11 C 0.15 1.98 6.28 -83.70 -0.53 1.45 16 12 N -0.67 -8.78 5.33 -9.87 -0.05 -8.83 16 13 C 0.48 7.45 6.91 -10.99 -0.08 7.37 16 14 O -0.53 -9.45 13.74 5.56 0.08 -9.38 16 15 C 0.08 1.31 3.15 -68.87 -0.22 1.09 16 16 H 0.10 1.51 8.14 -51.93 -0.42 1.09 16 17 N -0.81 -13.14 8.44 -5.66 -0.05 -13.19 16 18 C -0.10 -1.89 4.78 -26.73 -0.13 -2.02 16 19 C 0.03 0.78 4.86 -27.88 -0.14 0.65 16 20 C -0.52 -14.65 9.11 -34.44 -0.31 -14.97 16 21 H 0.05 1.45 7.74 -52.49 -0.41 1.04 16 22 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 23 N -0.89 -26.77 13.29 55.43 0.74 -26.04 16 24 Si 0.89 21.69 29.54 -169.99 -5.02 16.66 16 25 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 26 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 27 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 28 C -0.12 -1.43 9.64 -39.39 -0.38 -1.81 16 29 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.05 0.33 6.28 -51.93 -0.33 0.01 16 31 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 32 H 0.03 0.21 8.12 -51.93 -0.42 -0.21 16 33 H 0.08 0.64 6.29 -51.93 -0.33 0.31 16 34 H 0.08 0.50 5.93 -51.93 -0.31 0.20 16 35 H 0.03 0.22 8.05 -51.93 -0.42 -0.20 16 36 H 0.06 0.42 6.52 -51.93 -0.34 0.08 16 37 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 39 H 0.09 0.72 6.22 -51.93 -0.32 0.40 16 40 H 0.04 0.35 7.90 -51.93 -0.41 -0.06 16 41 H 0.12 0.93 7.96 -52.49 -0.42 0.51 16 42 H 0.12 1.10 8.06 -52.48 -0.42 0.68 16 43 H 0.13 1.97 6.29 -52.49 -0.33 1.64 16 44 H 0.41 4.43 8.83 -40.82 -0.36 4.07 16 45 H 0.35 5.79 8.58 -39.30 -0.34 5.45 16 46 H 0.33 4.68 9.06 -39.29 -0.36 4.33 16 47 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 48 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 49 H 0.04 0.98 7.75 -51.93 -0.40 0.57 16 50 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 51 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 52 H 0.13 1.34 8.06 -52.48 -0.42 0.92 16 LS Contribution 415.37 15.07 6.26 6.26 Total: -1.00 -32.22 415.37 -10.73 -42.95 By element: Atomic # 1 Polarization: 18.78 SS G_CDS: -8.85 Total: 9.94 kcal Atomic # 6 Polarization: -10.14 SS G_CDS: -2.80 Total: -12.94 kcal Atomic # 7 Polarization: -53.10 SS G_CDS: -0.40 Total: -53.49 kcal Atomic # 8 Polarization: -9.45 SS G_CDS: 0.08 Total: -9.38 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.66 kcal Total LS contribution 6.26 Total: 6.26 kcal Total: -32.22 -10.73 -42.95 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424138779.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.576 kcal (2) G-P(sol) polarization free energy of solvation -32.217 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.641 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.728 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.946 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.370 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds