Wall clock time and date at job start Tue Mar 31 2020 18:16:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46903 * 109.46889 * 2 1 4 4 C 1.46904 * 111.00142 * 66.04957 * 3 2 1 5 5 C 1.52996 * 109.47053 * 196.20883 * 4 3 2 6 6 C 1.46909 * 111.00050 * 189.99871 * 3 2 1 7 7 C 1.50706 * 109.46677 * 75.97040 * 6 3 2 8 8 C 1.38309 * 119.96200 * 264.98020 * 7 6 3 9 9 C 1.38254 * 120.13801 * 179.77018 * 8 7 6 10 10 C 1.38141 * 120.07232 * 0.50856 * 9 8 7 11 11 C 1.38846 * 119.92593 * 359.74272 * 10 9 8 12 12 N 1.39923 * 120.06932 * 179.97438 * 11 10 9 13 13 C 1.34778 * 120.00170 * 323.93635 * 12 11 10 14 14 O 1.21279 * 119.99714 * 4.82016 * 13 12 11 15 15 C 1.50697 * 120.00029 * 184.82230 * 13 12 11 16 16 H 1.09004 * 109.47212 * 319.99843 * 15 13 12 17 17 N 1.46899 * 109.47455 * 199.99955 * 15 13 12 18 18 C 1.52997 * 109.47291 * 79.99616 * 15 13 12 19 19 C 1.52997 * 109.47402 * 185.00093 * 18 15 13 20 20 C 1.50704 * 109.47453 * 180.02562 * 19 18 15 21 21 H 1.08001 * 119.99924 * 0.02562 * 20 19 18 22 22 C 1.37876 * 120.00444 * 179.97438 * 20 19 18 23 23 N 1.31518 * 119.99828 * 0.02562 * 22 20 19 24 24 Si 1.86791 * 120.00283 * 179.97438 * 22 20 19 25 25 H 1.48500 * 109.47033 * 0.02562 * 24 22 20 26 26 H 1.48503 * 109.47084 * 120.00270 * 24 22 20 27 27 H 1.48498 * 109.47383 * 240.00332 * 24 22 20 28 28 C 1.38085 * 119.96476 * 85.25612 * 7 6 3 29 29 H 1.08997 * 109.46677 * 179.97438 * 1 2 3 30 30 H 1.09005 * 109.46947 * 300.00110 * 1 2 3 31 31 H 1.09000 * 109.46595 * 59.99713 * 1 2 3 32 32 H 1.09002 * 109.47349 * 119.99754 * 2 1 3 33 33 H 1.08998 * 109.47065 * 240.00299 * 2 1 3 34 34 H 1.09000 * 109.46386 * 316.20509 * 4 3 2 35 35 H 1.09001 * 109.47169 * 76.20454 * 4 3 2 36 36 H 1.09001 * 109.47390 * 301.37812 * 5 4 3 37 37 H 1.08999 * 109.47284 * 61.37421 * 5 4 3 38 38 H 1.09001 * 109.46982 * 181.37750 * 5 4 3 39 39 H 1.08998 * 109.47002 * 195.97064 * 6 3 2 40 40 H 1.08997 * 109.46983 * 315.97393 * 6 3 2 41 41 H 1.07999 * 119.92972 * 359.97438 * 8 7 6 42 42 H 1.08004 * 119.96560 * 180.22924 * 9 8 7 43 43 H 1.07992 * 120.03335 * 179.72469 * 10 9 8 44 44 H 0.97003 * 119.99751 * 143.93186 * 12 11 10 45 45 H 1.00891 * 110.99652 * 300.00325 * 17 15 13 46 46 H 1.00903 * 110.99457 * 63.95492 * 17 15 13 47 47 H 1.09001 * 109.47599 * 305.00301 * 18 15 13 48 48 H 1.09004 * 109.46800 * 64.99915 * 18 15 13 49 49 H 1.09005 * 109.47474 * 300.00181 * 19 18 15 50 50 H 1.09004 * 109.47288 * 60.00121 * 19 18 15 51 51 H 0.96998 * 119.99999 * 179.97438 * 23 22 20 52 52 H 1.08003 * 120.03421 * 359.95734 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.6702 2.0670 1.2534 5 6 1.8230 3.5784 1.0713 6 6 3.4686 1.4312 -0.2381 7 6 3.7457 1.1831 -1.6986 8 6 4.0480 -0.0933 -2.1371 9 6 4.2982 -0.3259 -3.4768 10 6 4.2573 0.7184 -4.3801 11 6 3.9592 2.0018 -3.9422 12 7 3.9175 3.0619 -4.8545 13 6 4.7834 3.0972 -5.8867 14 8 5.5398 2.1682 -6.0756 15 6 4.8117 4.2909 -6.8060 16 1 3.7924 4.6270 -6.9966 17 7 5.4491 3.9165 -8.0754 18 6 5.6070 5.4213 -6.1499 19 6 5.5312 6.6734 -7.0258 20 6 6.3151 7.7867 -6.3798 21 1 6.8175 7.6178 -5.4388 22 6 6.3918 9.0204 -6.9905 23 7 5.7804 9.2259 -8.1367 24 14 7.3629 10.4004 -6.1895 25 1 7.9510 9.9165 -4.9147 26 1 8.4505 10.8350 -7.1024 27 1 6.4596 11.5466 -5.9147 28 6 3.7032 2.2313 -2.5964 29 1 -0.3632 -1.0277 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3632 0.5139 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 1.8934 -0.5138 -0.8900 34 1 0.6384 1.8353 1.5175 35 1 2.3339 1.7278 2.0488 36 1 2.8489 3.8078 0.7832 37 1 1.1416 3.9213 0.2927 38 1 1.5873 4.0828 2.0084 39 1 3.8519 2.4121 0.0429 40 1 3.9598 0.6640 0.3604 41 1 4.0854 -0.9106 -1.4321 42 1 4.5303 -1.3244 -3.8168 43 1 4.4572 0.5368 -5.4257 44 1 3.2653 3.7714 -4.7440 45 1 6.3957 3.6011 -7.9254 46 1 4.9071 3.2164 -8.5595 47 1 5.1868 5.6388 -5.1680 48 1 6.6479 5.1170 -6.0403 49 1 5.9514 6.4560 -8.0078 50 1 4.4902 6.9777 -7.1354 51 1 5.8340 10.0939 -8.5662 52 1 3.4708 3.2285 -2.2527 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000424138779.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:16:55 Heat of formation + Delta-G solvation = -41.557461 kcal Electronic energy + Delta-G solvation = -28340.189878 eV Core-core repulsion = 24530.911745 eV Total energy + Delta-G solvation = -3809.278133 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.74174 -40.19419 -38.63177 -36.86561 -35.89529 -34.83105 -33.06460 -32.66871 -31.94953 -30.96947 -29.77121 -28.10691 -26.37764 -25.71872 -23.97070 -23.36369 -23.14299 -21.95409 -21.39469 -20.86088 -18.92697 -18.30064 -18.08000 -17.22233 -16.95303 -16.77971 -16.49460 -16.44251 -16.13955 -16.00790 -15.52226 -15.18241 -15.10215 -14.88980 -14.59164 -14.29678 -13.95945 -13.89457 -13.66548 -13.55504 -13.42287 -13.07539 -12.87675 -12.82691 -12.69678 -12.50853 -12.48083 -12.28536 -12.26781 -12.11519 -11.83315 -11.76870 -11.62340 -11.45648 -11.31255 -11.17432 -10.97564 -10.49361 -9.77839 -9.66073 -9.26288 -9.10450 -8.13964 -6.23873 0.28545 0.42126 1.41092 1.41942 1.44174 1.54874 2.03739 2.44622 2.70816 3.16601 3.19266 3.50024 3.73718 3.78407 3.95227 4.05872 4.07066 4.16493 4.24093 4.27805 4.29009 4.38547 4.40151 4.50053 4.57673 4.62178 4.67402 4.73309 4.76551 4.77537 4.88374 4.91430 5.01756 5.05800 5.14768 5.15640 5.23618 5.35655 5.36750 5.39134 5.41473 5.55372 5.57619 5.63492 5.84351 5.98661 6.03130 6.08333 6.15291 6.20931 6.30443 6.35251 6.50270 6.94845 7.01185 7.44207 8.97420 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.011756 B = 0.002408 C = 0.002096 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2381.197241 B =11622.723609 C =13354.651037 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.047 3.953 3 N -0.544 5.544 4 C 0.047 3.953 5 C -0.148 4.148 6 C 0.095 3.905 7 C -0.059 4.059 8 C -0.128 4.128 9 C -0.107 4.107 10 C -0.142 4.142 11 C 0.128 3.872 12 N -0.662 5.662 13 C 0.490 3.510 14 O -0.559 6.559 15 C 0.090 3.910 16 H 0.115 0.885 17 N -0.817 5.817 18 C -0.082 4.082 19 C 0.039 3.961 20 C -0.542 4.542 21 H 0.055 0.945 22 C 0.001 3.999 23 N -0.929 5.929 24 Si 0.959 3.041 25 H -0.265 1.265 26 H -0.281 1.281 27 H -0.277 1.277 28 C -0.127 4.127 29 H 0.068 0.932 30 H 0.059 0.941 31 H 0.050 0.950 32 H 0.039 0.961 33 H 0.072 0.928 34 H 0.084 0.916 35 H 0.038 0.962 36 H 0.050 0.950 37 H 0.053 0.947 38 H 0.068 0.932 39 H 0.086 0.914 40 H 0.055 0.945 41 H 0.141 0.859 42 H 0.141 0.859 43 H 0.116 0.884 44 H 0.424 0.576 45 H 0.346 0.654 46 H 0.348 0.652 47 H 0.067 0.933 48 H 0.042 0.958 49 H 0.007 0.993 50 H -0.004 1.004 51 H 0.262 0.738 52 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.995 -20.975 19.531 30.697 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.081 4.081 3 N -0.269 5.269 4 C -0.080 4.080 5 C -0.206 4.206 6 C -0.032 4.032 7 C -0.060 4.060 8 C -0.147 4.147 9 C -0.125 4.125 10 C -0.162 4.162 11 C 0.034 3.966 12 N -0.308 5.308 13 C 0.277 3.723 14 O -0.436 6.436 15 C -0.026 4.026 16 H 0.133 0.867 17 N -0.346 5.346 18 C -0.120 4.120 19 C 0.002 3.998 20 C -0.580 4.580 21 H 0.073 0.927 22 C -0.196 4.196 23 N -0.570 5.570 24 Si 0.784 3.216 25 H -0.189 1.189 26 H -0.207 1.207 27 H -0.203 1.203 28 C -0.148 4.148 29 H 0.087 0.913 30 H 0.078 0.922 31 H 0.069 0.931 32 H 0.058 0.942 33 H 0.091 0.909 34 H 0.102 0.898 35 H 0.057 0.943 36 H 0.069 0.931 37 H 0.072 0.928 38 H 0.087 0.913 39 H 0.105 0.895 40 H 0.074 0.926 41 H 0.159 0.841 42 H 0.158 0.842 43 H 0.134 0.866 44 H 0.262 0.738 45 H 0.160 0.840 46 H 0.161 0.839 47 H 0.086 0.914 48 H 0.061 0.939 49 H 0.025 0.975 50 H 0.014 0.986 51 H 0.071 0.929 52 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -10.818 -20.428 18.634 29.690 hybrid contribution 0.717 -0.085 0.845 1.111 sum -10.101 -20.512 19.478 30.036 Atomic orbital electron populations 1.21788 0.94440 1.02053 1.02030 1.22164 0.96472 0.88481 1.00968 1.62009 1.12725 1.16569 1.35581 1.22182 1.01542 0.94792 0.89473 1.21793 1.01801 0.94906 1.02055 1.21038 0.88620 1.02478 0.91051 1.19676 0.97942 0.92781 0.95585 1.21233 1.00915 0.96775 0.95750 1.21219 0.98974 0.99053 0.93251 1.21247 1.02444 0.91782 1.00737 1.18006 1.01402 0.87649 0.89531 1.43638 1.36041 1.25041 1.26076 1.22664 0.78602 0.89445 0.81579 1.90637 1.41671 1.38867 1.72470 1.21648 1.01626 0.91165 0.88180 0.86714 1.58973 1.07320 1.49053 1.19217 1.21397 0.98163 0.93760 0.98702 1.18832 0.95217 0.90818 0.94923 1.21747 1.31919 0.97347 1.06988 0.92715 1.25893 0.96830 1.01433 0.95495 1.70108 1.44851 1.24045 1.17952 0.85493 0.78440 0.78980 0.78681 1.18869 1.20710 1.20254 1.20889 1.03247 1.00396 0.90243 0.91334 0.92202 0.93115 0.94248 0.90916 0.89792 0.94334 0.93081 0.92760 0.91309 0.89548 0.92636 0.84093 0.84159 0.86600 0.73814 0.83996 0.83852 0.91434 0.93911 0.97474 0.98568 0.92931 0.84976 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.66 9.88 71.98 0.71 -0.95 16 2 C 0.05 0.59 5.50 86.30 0.47 1.06 16 3 N -0.54 -7.89 4.38 -900.74 -3.94 -11.84 16 4 C 0.05 0.57 5.55 86.30 0.48 1.05 16 5 C -0.15 -1.87 10.00 71.98 0.72 -1.15 16 6 C 0.10 1.43 4.96 85.56 0.42 1.86 16 7 C -0.06 -1.12 5.05 -19.88 -0.10 -1.22 16 8 C -0.13 -2.29 8.39 22.29 0.19 -2.10 16 9 C -0.11 -2.23 10.04 22.25 0.22 -2.01 16 10 C -0.14 -3.76 8.69 22.39 0.19 -3.57 16 11 C 0.13 3.32 6.28 38.15 0.24 3.56 16 12 N -0.66 -16.99 5.33 -303.52 -1.62 -18.61 16 13 C 0.49 15.07 6.91 87.66 0.61 15.68 16 14 O -0.56 -19.95 13.74 -3.03 -0.04 -19.99 16 15 C 0.09 2.91 3.15 44.17 0.14 3.05 16 16 H 0.12 3.39 8.14 -2.38 -0.02 3.37 16 17 N -0.82 -27.02 8.44 -171.81 -1.45 -28.47 16 18 C -0.08 -3.26 4.78 30.59 0.15 -3.12 16 19 C 0.04 2.02 4.86 29.85 0.15 2.17 16 20 C -0.54 -30.69 9.11 25.60 0.23 -30.45 16 21 H 0.05 3.00 7.74 -2.91 -0.02 2.98 16 22 C 0.00 0.07 5.46 84.65 0.46 0.54 16 23 N -0.93 -56.52 13.29 21.45 0.28 -56.24 16 24 Si 0.96 44.46 29.54 68.60 2.03 46.49 16 25 H -0.26 -11.76 7.11 99.48 0.71 -11.05 16 26 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 27 H -0.28 -12.42 7.11 99.48 0.71 -11.72 16 28 C -0.13 -2.83 9.64 22.39 0.22 -2.61 16 29 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 30 H 0.06 0.61 6.28 -2.38 -0.01 0.60 16 31 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 32 H 0.04 0.43 8.12 -2.39 -0.02 0.41 16 33 H 0.07 1.01 6.29 -2.39 -0.02 0.99 16 34 H 0.08 0.91 5.93 -2.39 -0.01 0.89 16 35 H 0.04 0.42 8.05 -2.39 -0.02 0.40 16 36 H 0.05 0.69 6.52 -2.39 -0.02 0.68 16 37 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 38 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 39 H 0.09 1.29 6.22 -2.39 -0.01 1.28 16 40 H 0.06 0.72 7.90 -2.39 -0.02 0.70 16 41 H 0.14 1.80 7.96 -2.91 -0.02 1.77 16 42 H 0.14 2.31 8.06 -2.91 -0.02 2.29 16 43 H 0.12 3.49 6.29 -2.91 -0.02 3.47 16 44 H 0.42 8.77 8.83 -92.71 -0.82 7.96 16 45 H 0.35 11.75 8.58 -89.70 -0.77 10.98 16 46 H 0.35 9.79 9.06 -89.69 -0.81 8.98 16 47 H 0.07 2.49 8.14 -2.39 -0.02 2.47 16 48 H 0.04 1.79 8.14 -2.38 -0.02 1.77 16 49 H 0.01 0.39 7.75 -2.38 -0.02 0.37 16 50 H 0.00 -0.22 8.14 -2.38 -0.02 -0.24 16 51 H 0.26 14.96 8.31 -92.71 -0.77 14.19 16 52 H 0.13 2.68 8.06 -2.91 -0.02 2.66 16 Total: -1.00 -69.31 415.37 -0.71 -70.02 By element: Atomic # 1 Polarization: 38.32 SS G_CDS: -1.47 Total: 36.85 kcal Atomic # 6 Polarization: -23.71 SS G_CDS: 5.50 Total: -18.21 kcal Atomic # 7 Polarization: -108.43 SS G_CDS: -6.73 Total: -115.16 kcal Atomic # 8 Polarization: -19.95 SS G_CDS: -0.04 Total: -19.99 kcal Atomic # 14 Polarization: 44.46 SS G_CDS: 2.03 Total: 46.49 kcal Total: -69.31 -0.71 -70.02 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424138779.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.460 kcal (2) G-P(sol) polarization free energy of solvation -69.309 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.849 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.709 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.018 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.557 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds