Wall clock time and date at job start Tue Mar 31 2020 18:28:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46901 * 109.46783 * 2 1 4 4 C 1.46908 * 110.99752 * 193.95602 * 3 2 1 5 5 C 1.52993 * 109.47363 * 66.04064 * 4 3 2 6 6 N 1.46505 * 109.47415 * 180.02562 * 5 4 3 7 7 C 1.34771 * 120.00135 * 180.02562 * 6 5 4 8 8 O 1.21285 * 119.99910 * 359.97438 * 7 6 5 9 9 C 1.50696 * 120.00084 * 179.97438 * 7 6 5 10 10 H 1.09010 * 109.46845 * 39.99928 * 9 7 6 11 11 N 1.46900 * 109.47416 * 159.99597 * 9 7 6 12 12 C 1.52998 * 109.47217 * 280.00103 * 9 7 6 13 13 C 1.53001 * 109.47201 * 174.99810 * 12 9 7 14 14 C 1.50703 * 109.46965 * 180.02562 * 13 12 9 15 15 H 1.07997 * 120.00251 * 359.97438 * 14 13 12 16 16 C 1.37881 * 119.99788 * 180.02562 * 14 13 12 17 17 N 1.31514 * 119.99942 * 359.97438 * 16 14 13 18 18 Si 1.86799 * 119.99727 * 179.97438 * 16 14 13 19 19 H 1.48501 * 109.47048 * 89.99971 * 18 16 14 20 20 H 1.48508 * 109.46876 * 209.99685 * 18 16 14 21 21 H 1.48495 * 109.47417 * 329.99621 * 18 16 14 22 22 C 1.39669 * 111.00272 * 70.00244 * 3 2 1 23 23 C 1.38927 * 120.07768 * 63.95026 * 22 3 2 24 24 C 1.38088 * 119.92585 * 179.74380 * 23 22 3 25 25 C 1.38304 * 120.07187 * 0.28063 * 24 23 22 26 26 C 1.38265 * 120.15230 * 359.97438 * 25 24 23 27 27 C 1.38126 * 120.07441 * 359.97438 * 26 25 24 28 28 C 1.50696 * 120.03682 * 179.97438 * 27 26 25 29 29 H 1.09007 * 109.47564 * 300.00203 * 1 2 3 30 30 H 1.09003 * 109.47589 * 60.00195 * 1 2 3 31 31 H 1.09000 * 109.47083 * 180.02562 * 1 2 3 32 32 H 1.08992 * 109.47151 * 239.99573 * 2 1 3 33 33 H 1.08998 * 109.47347 * 119.99409 * 2 1 3 34 34 H 1.08998 * 109.46902 * 186.04824 * 4 3 2 35 35 H 1.09005 * 109.46602 * 306.04603 * 4 3 2 36 36 H 1.09007 * 109.47546 * 300.00506 * 5 4 3 37 37 H 1.08997 * 109.47147 * 60.00130 * 5 4 3 38 38 H 0.96998 * 119.99553 * 0.02562 * 6 5 4 39 39 H 1.00900 * 111.00070 * 296.04984 * 11 9 7 40 40 H 1.00895 * 110.99817 * 60.00261 * 11 9 7 41 41 H 1.08998 * 109.47151 * 294.99787 * 12 9 7 42 42 H 1.09003 * 109.47161 * 54.99903 * 12 9 7 43 43 H 1.08998 * 109.47050 * 300.00039 * 13 12 9 44 44 H 1.09003 * 109.46988 * 59.99986 * 13 12 9 45 45 H 0.96997 * 119.99749 * 179.97438 * 17 16 14 46 46 H 1.08002 * 120.04000 * 0.02802 * 23 22 3 47 47 H 1.07999 * 119.96399 * 180.25052 * 24 23 22 48 48 H 1.07999 * 119.92642 * 179.97438 * 25 24 23 49 49 H 1.08007 * 119.96277 * 179.97438 * 26 25 24 50 50 H 1.08999 * 109.47281 * 89.99554 * 28 27 26 51 51 H 1.08996 * 109.47255 * 209.99485 * 28 27 26 52 52 H 1.09000 * 109.47458 * 329.99651 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 3.4499 1.4377 -0.3308 5 6 3.6566 0.9785 -1.7755 6 7 5.0831 1.0305 -2.1051 7 6 5.5046 0.6687 -3.3331 8 8 4.7030 0.2996 -4.1650 9 6 6.9719 0.7227 -3.6723 10 1 7.5550 0.3731 -2.8202 11 7 7.2380 -0.1369 -4.8335 12 6 7.3661 2.1635 -4.0034 13 6 8.8779 2.2403 -4.2259 14 6 9.2662 3.6596 -4.5513 15 1 8.5104 4.4297 -4.5955 16 6 10.5865 3.9748 -4.7937 17 7 11.5069 3.0369 -4.7404 18 14 11.0677 5.7339 -5.1978 19 1 11.3829 6.4616 -3.9423 20 1 12.2617 5.7300 -6.0809 21 1 9.9412 6.4084 -5.8915 22 6 1.7660 2.0056 1.2253 23 6 2.3712 1.5336 2.3833 24 6 2.1224 2.1528 3.5922 25 6 1.2673 3.2381 3.6519 26 6 0.6591 3.7072 2.5022 27 6 0.9044 3.0931 1.2895 28 6 0.2407 3.6047 0.0370 29 1 -0.3634 0.5139 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5137 0.8900 34 1 3.8112 2.4600 -0.2192 35 1 4.0027 0.7816 0.3416 36 1 3.2953 -0.0439 -1.8870 37 1 3.1038 1.6345 -2.4478 38 1 5.7242 1.3253 -1.4396 39 1 7.0465 -1.1041 -4.6188 40 1 6.7088 0.1668 -5.6370 41 1 6.8490 2.4829 -4.9082 42 1 7.0871 2.8158 -3.1759 43 1 9.3950 1.9209 -3.3211 44 1 9.1570 1.5880 -5.0534 45 1 12.4356 3.2585 -4.9114 46 1 3.0392 0.6861 2.3374 47 1 2.5958 1.7889 4.4921 48 1 1.0740 3.7204 4.5987 49 1 -0.0085 4.5547 2.5524 50 1 0.8730 4.3624 -0.4258 51 1 0.0937 2.7793 -0.6595 52 1 -0.7248 4.0426 0.2903 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424141975.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:28:41 Heat of formation + Delta-G solvation = -21.099867 kcal Electronic energy + Delta-G solvation = -28287.790527 eV Core-core repulsion = 24479.399502 eV Total energy + Delta-G solvation = -3808.391025 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.60354 -39.70200 -37.50333 -35.31034 -34.75018 -33.00931 -32.78825 -31.56602 -30.64931 -30.07484 -28.22111 -26.78046 -26.00993 -23.87716 -23.76060 -22.69591 -21.51263 -20.77913 -20.55766 -19.74259 -17.43918 -17.17843 -16.37662 -16.15820 -15.96603 -15.79984 -15.60153 -15.40112 -15.10752 -14.65200 -14.42741 -14.10137 -14.00555 -13.67566 -13.63155 -13.43032 -13.39867 -12.70756 -12.54321 -12.37410 -12.29570 -12.14257 -12.01490 -11.86418 -11.71971 -11.59400 -11.55728 -11.48341 -11.06635 -10.89022 -10.66952 -10.54790 -10.13496 -9.79517 -9.36870 -9.15267 -9.06165 -8.98604 -8.91820 -8.82081 -8.35001 -8.20228 -5.93408 -3.95447 0.94677 1.05323 2.78133 2.98209 3.34949 3.38195 3.41489 3.45102 3.69189 4.44973 4.50588 4.55718 4.58430 4.68098 4.70451 4.79022 4.88281 4.91595 5.00153 5.09487 5.10017 5.17228 5.21920 5.30007 5.41358 5.42161 5.48484 5.52780 5.54203 5.58306 5.63379 5.67989 5.77850 5.84214 5.87659 6.00929 6.08512 6.16681 6.27208 6.36233 6.44526 6.51703 6.55198 6.66435 7.05746 7.09417 7.37397 7.58997 7.76605 7.80467 7.96803 8.13627 8.31656 8.49048 9.12608 9.67684 11.17522 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.012444 B = 0.002204 C = 0.001996 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2249.585215 B =12698.863424 C =14024.839026 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.047 3.953 3 N -0.496 5.496 4 C 0.050 3.950 5 C 0.122 3.878 6 N -0.731 5.731 7 C 0.485 3.515 8 O -0.553 6.553 9 C 0.079 3.921 10 H 0.097 0.903 11 N -0.807 5.807 12 C -0.095 4.095 13 C 0.031 3.969 14 C -0.522 4.522 15 H 0.052 0.948 16 C 0.057 3.943 17 N -0.893 5.893 18 Si 0.889 3.111 19 H -0.282 1.282 20 H -0.287 1.287 21 H -0.275 1.275 22 C 0.090 3.910 23 C -0.145 4.145 24 C -0.118 4.118 25 C -0.119 4.119 26 C -0.119 4.119 27 C -0.058 4.058 28 C -0.109 4.109 29 H 0.054 0.946 30 H 0.064 0.936 31 H 0.059 0.941 32 H 0.083 0.917 33 H 0.039 0.961 34 H 0.085 0.915 35 H 0.045 0.955 36 H 0.065 0.935 37 H 0.075 0.925 38 H 0.402 0.598 39 H 0.333 0.667 40 H 0.348 0.652 41 H 0.053 0.947 42 H 0.053 0.947 43 H 0.013 0.987 44 H 0.035 0.965 45 H 0.259 0.741 46 H 0.118 0.882 47 H 0.120 0.880 48 H 0.121 0.879 49 H 0.124 0.876 50 H 0.069 0.931 51 H 0.080 0.920 52 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.913 -4.977 17.388 29.982 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.079 4.079 3 N -0.218 5.218 4 C -0.077 4.077 5 C -0.003 4.003 6 N -0.385 5.385 7 C 0.270 3.730 8 O -0.431 6.431 9 C -0.037 4.037 10 H 0.115 0.885 11 N -0.335 5.335 12 C -0.133 4.133 13 C -0.006 4.006 14 C -0.560 4.560 15 H 0.070 0.930 16 C -0.144 4.144 17 N -0.532 5.532 18 Si 0.717 3.283 19 H -0.208 1.208 20 H -0.213 1.213 21 H -0.200 1.200 22 C -0.004 4.004 23 C -0.165 4.165 24 C -0.137 4.137 25 C -0.137 4.137 26 C -0.137 4.137 27 C -0.059 4.059 28 C -0.166 4.166 29 H 0.073 0.927 30 H 0.083 0.917 31 H 0.078 0.922 32 H 0.101 0.899 33 H 0.057 0.943 34 H 0.104 0.896 35 H 0.063 0.937 36 H 0.083 0.917 37 H 0.093 0.907 38 H 0.237 0.763 39 H 0.145 0.855 40 H 0.162 0.838 41 H 0.072 0.928 42 H 0.072 0.928 43 H 0.031 0.969 44 H 0.053 0.947 45 H 0.069 0.931 46 H 0.136 0.864 47 H 0.138 0.862 48 H 0.139 0.861 49 H 0.142 0.858 50 H 0.088 0.912 51 H 0.099 0.901 52 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -23.793 -4.791 16.404 29.295 hybrid contribution 0.088 0.450 1.001 1.101 sum -23.705 -4.341 17.406 29.728 Atomic orbital electron populations 1.21753 0.94440 1.01606 1.02608 1.22303 0.96685 0.87425 1.01466 1.59486 1.16276 1.17380 1.28619 1.22286 0.87320 1.02434 0.95674 1.21238 0.82460 1.01678 0.94918 1.46080 1.08328 1.68910 1.15152 1.22746 0.93832 0.75382 0.81023 1.90650 1.56837 1.47551 1.48014 1.21838 0.87788 0.98647 0.95439 0.88476 1.59001 1.63382 1.05316 1.05758 1.21657 1.02117 0.89227 1.00346 1.19019 0.87034 0.96711 0.97842 1.21283 0.92696 0.94587 1.47468 0.92982 1.24994 0.96765 0.96937 0.95664 1.69974 1.01067 1.32284 1.49887 0.86651 0.78064 0.85359 0.78238 1.20791 1.21262 1.19962 1.18550 0.97865 0.95798 0.88166 1.21626 1.00847 1.00617 0.93375 1.20996 0.98753 0.96499 0.97452 1.21161 0.97281 0.96860 0.98407 1.21040 1.00618 1.00047 0.92001 1.19856 0.96223 0.94188 0.95588 1.20709 0.99066 1.01817 0.94987 0.92703 0.91666 0.92196 0.89865 0.94277 0.89631 0.93704 0.91684 0.90660 0.76343 0.85497 0.83802 0.92821 0.92833 0.96909 0.94653 0.93109 0.86417 0.86192 0.86079 0.85814 0.91220 0.90147 0.92310 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.06 9.77 37.16 0.36 -0.70 16 2 C 0.05 0.37 5.47 -3.83 -0.02 0.35 16 3 N -0.50 -4.33 3.41 -171.11 -0.58 -4.92 16 4 C 0.05 0.44 4.66 -3.82 -0.02 0.43 16 5 C 0.12 1.32 5.63 -4.04 -0.02 1.30 16 6 N -0.73 -8.88 5.56 -60.30 -0.33 -9.21 16 7 C 0.48 7.54 7.07 -10.99 -0.08 7.46 16 8 O -0.55 -10.19 16.25 5.55 0.09 -10.10 16 9 C 0.08 1.31 3.15 -68.87 -0.22 1.09 16 10 H 0.10 1.51 8.14 -51.92 -0.42 1.08 16 11 N -0.81 -13.60 8.44 -5.65 -0.05 -13.65 16 12 C -0.10 -1.91 4.78 -26.73 -0.13 -2.04 16 13 C 0.03 0.79 4.86 -27.88 -0.14 0.66 16 14 C -0.52 -14.77 9.11 -34.44 -0.31 -15.09 16 15 H 0.05 1.44 7.74 -52.49 -0.41 1.03 16 16 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 17 N -0.89 -26.96 13.29 55.43 0.74 -26.22 16 18 Si 0.89 21.79 29.54 -169.99 -5.02 16.77 16 19 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 20 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 21 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 22 C 0.09 0.81 3.72 -83.79 -0.31 0.50 16 23 C -0.14 -1.22 8.53 -39.38 -0.34 -1.56 16 24 C -0.12 -0.91 10.04 -39.61 -0.40 -1.31 16 25 C -0.12 -0.88 10.04 -39.55 -0.40 -1.28 16 26 C -0.12 -0.92 9.70 -39.61 -0.38 -1.31 16 27 C -0.06 -0.50 5.90 -104.42 -0.62 -1.12 16 28 C -0.11 -0.86 9.77 36.00 0.35 -0.51 16 29 H 0.05 0.43 7.52 -51.93 -0.39 0.04 16 30 H 0.06 0.49 7.86 -51.93 -0.41 0.08 16 31 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.08 0.67 5.98 -51.93 -0.31 0.36 16 33 H 0.04 0.30 7.07 -51.93 -0.37 -0.07 16 34 H 0.09 0.81 8.06 -51.93 -0.42 0.39 16 35 H 0.04 0.37 7.48 -51.93 -0.39 -0.02 16 36 H 0.06 0.73 6.31 -51.93 -0.33 0.40 16 37 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 38 H 0.40 4.11 8.47 -40.82 -0.35 3.77 16 39 H 0.33 4.86 9.06 -39.29 -0.36 4.51 16 40 H 0.35 5.98 8.58 -39.29 -0.34 5.64 16 41 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 42 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 43 H 0.01 0.34 8.14 -51.93 -0.42 -0.09 16 44 H 0.04 0.98 7.75 -51.93 -0.40 0.58 16 45 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 46 H 0.12 0.91 7.14 -52.49 -0.37 0.53 16 47 H 0.12 0.72 8.06 -52.49 -0.42 0.29 16 48 H 0.12 0.65 8.06 -52.49 -0.42 0.23 16 49 H 0.12 0.74 8.06 -52.48 -0.42 0.32 16 50 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 51 H 0.08 0.68 7.01 -51.93 -0.36 0.31 16 52 H 0.06 0.38 8.09 -51.93 -0.42 -0.04 16 LS Contribution 419.04 15.07 6.31 6.31 Total: -1.00 -32.84 419.04 -10.58 -43.43 By element: Atomic # 1 Polarization: 18.13 SS G_CDS: -8.98 Total: 9.15 kcal Atomic # 6 Polarization: -8.80 SS G_CDS: -2.76 Total: -11.56 kcal Atomic # 7 Polarization: -53.77 SS G_CDS: -0.23 Total: -54.00 kcal Atomic # 8 Polarization: -10.19 SS G_CDS: 0.09 Total: -10.10 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.77 kcal Total LS contribution 6.31 Total: 6.31 kcal Total: -32.84 -10.58 -43.43 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424141975.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.326 kcal (2) G-P(sol) polarization free energy of solvation -32.843 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.516 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.584 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.426 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.100 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds