Wall clock time and date at job start Tue Mar 31 2020 18:28:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46901 * 109.46783 * 2 1 4 4 C 1.46908 * 110.99752 * 193.95602 * 3 2 1 5 5 C 1.52993 * 109.47363 * 66.04064 * 4 3 2 6 6 N 1.46505 * 109.47415 * 180.02562 * 5 4 3 7 7 C 1.34771 * 120.00135 * 180.02562 * 6 5 4 8 8 O 1.21285 * 119.99910 * 359.97438 * 7 6 5 9 9 C 1.50696 * 120.00084 * 179.97438 * 7 6 5 10 10 H 1.09010 * 109.46845 * 39.99928 * 9 7 6 11 11 N 1.46900 * 109.47416 * 159.99597 * 9 7 6 12 12 C 1.52998 * 109.47217 * 280.00103 * 9 7 6 13 13 C 1.53001 * 109.47201 * 174.99810 * 12 9 7 14 14 C 1.50703 * 109.46965 * 180.02562 * 13 12 9 15 15 H 1.07997 * 120.00251 * 359.97438 * 14 13 12 16 16 C 1.37881 * 119.99788 * 180.02562 * 14 13 12 17 17 N 1.31514 * 119.99942 * 359.97438 * 16 14 13 18 18 Si 1.86799 * 119.99727 * 179.97438 * 16 14 13 19 19 H 1.48501 * 109.47048 * 89.99971 * 18 16 14 20 20 H 1.48508 * 109.46876 * 209.99685 * 18 16 14 21 21 H 1.48495 * 109.47417 * 329.99621 * 18 16 14 22 22 C 1.39669 * 111.00272 * 70.00244 * 3 2 1 23 23 C 1.38927 * 120.07768 * 63.95026 * 22 3 2 24 24 C 1.38088 * 119.92585 * 179.74380 * 23 22 3 25 25 C 1.38304 * 120.07187 * 0.28063 * 24 23 22 26 26 C 1.38265 * 120.15230 * 359.97438 * 25 24 23 27 27 C 1.38126 * 120.07441 * 359.97438 * 26 25 24 28 28 C 1.50696 * 120.03682 * 179.97438 * 27 26 25 29 29 H 1.09007 * 109.47564 * 300.00203 * 1 2 3 30 30 H 1.09003 * 109.47589 * 60.00195 * 1 2 3 31 31 H 1.09000 * 109.47083 * 180.02562 * 1 2 3 32 32 H 1.08992 * 109.47151 * 239.99573 * 2 1 3 33 33 H 1.08998 * 109.47347 * 119.99409 * 2 1 3 34 34 H 1.08998 * 109.46902 * 186.04824 * 4 3 2 35 35 H 1.09005 * 109.46602 * 306.04603 * 4 3 2 36 36 H 1.09007 * 109.47546 * 300.00506 * 5 4 3 37 37 H 1.08997 * 109.47147 * 60.00130 * 5 4 3 38 38 H 0.96998 * 119.99553 * 0.02562 * 6 5 4 39 39 H 1.00900 * 111.00070 * 296.04984 * 11 9 7 40 40 H 1.00895 * 110.99817 * 60.00261 * 11 9 7 41 41 H 1.08998 * 109.47151 * 294.99787 * 12 9 7 42 42 H 1.09003 * 109.47161 * 54.99903 * 12 9 7 43 43 H 1.08998 * 109.47050 * 300.00039 * 13 12 9 44 44 H 1.09003 * 109.46988 * 59.99986 * 13 12 9 45 45 H 0.96997 * 119.99749 * 179.97438 * 17 16 14 46 46 H 1.08002 * 120.04000 * 0.02802 * 23 22 3 47 47 H 1.07999 * 119.96399 * 180.25052 * 24 23 22 48 48 H 1.07999 * 119.92642 * 179.97438 * 25 24 23 49 49 H 1.08007 * 119.96277 * 179.97438 * 26 25 24 50 50 H 1.08999 * 109.47281 * 89.99554 * 28 27 26 51 51 H 1.08996 * 109.47255 * 209.99485 * 28 27 26 52 52 H 1.09000 * 109.47458 * 329.99651 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 3.4499 1.4377 -0.3308 5 6 3.6566 0.9785 -1.7755 6 7 5.0831 1.0305 -2.1051 7 6 5.5046 0.6687 -3.3331 8 8 4.7030 0.2996 -4.1650 9 6 6.9719 0.7227 -3.6723 10 1 7.5550 0.3731 -2.8202 11 7 7.2380 -0.1369 -4.8335 12 6 7.3661 2.1635 -4.0034 13 6 8.8779 2.2403 -4.2259 14 6 9.2662 3.6596 -4.5513 15 1 8.5104 4.4297 -4.5955 16 6 10.5865 3.9748 -4.7937 17 7 11.5069 3.0369 -4.7404 18 14 11.0677 5.7339 -5.1978 19 1 11.3829 6.4616 -3.9423 20 1 12.2617 5.7300 -6.0809 21 1 9.9412 6.4084 -5.8915 22 6 1.7660 2.0056 1.2253 23 6 2.3712 1.5336 2.3833 24 6 2.1224 2.1528 3.5922 25 6 1.2673 3.2381 3.6519 26 6 0.6591 3.7072 2.5022 27 6 0.9044 3.0931 1.2895 28 6 0.2407 3.6047 0.0370 29 1 -0.3634 0.5139 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5137 0.8900 34 1 3.8112 2.4600 -0.2192 35 1 4.0027 0.7816 0.3416 36 1 3.2953 -0.0439 -1.8870 37 1 3.1038 1.6345 -2.4478 38 1 5.7242 1.3253 -1.4396 39 1 7.0465 -1.1041 -4.6188 40 1 6.7088 0.1668 -5.6370 41 1 6.8490 2.4829 -4.9082 42 1 7.0871 2.8158 -3.1759 43 1 9.3950 1.9209 -3.3211 44 1 9.1570 1.5880 -5.0534 45 1 12.4356 3.2585 -4.9114 46 1 3.0392 0.6861 2.3374 47 1 2.5958 1.7889 4.4921 48 1 1.0740 3.7204 4.5987 49 1 -0.0085 4.5547 2.5524 50 1 0.8730 4.3624 -0.4258 51 1 0.0937 2.7793 -0.6595 52 1 -0.7248 4.0426 0.2903 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000424141975.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:28:40 Heat of formation + Delta-G solvation = -42.439532 kcal Electronic energy + Delta-G solvation = -28288.715884 eV Core-core repulsion = 24479.399502 eV Total energy + Delta-G solvation = -3809.316383 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.31884 -40.86666 -38.20053 -36.82358 -35.85814 -34.80204 -33.60025 -32.21133 -31.92109 -31.39127 -29.08078 -27.93637 -27.14764 -25.38977 -24.37692 -23.69124 -22.39195 -22.09180 -21.44803 -20.97393 -18.68176 -18.18326 -17.99063 -17.22233 -17.00762 -16.66846 -16.50869 -16.38301 -16.30042 -16.03178 -15.34503 -15.24200 -14.95014 -14.88468 -14.47197 -14.28972 -14.25349 -14.01344 -13.81944 -13.45069 -13.35968 -13.19268 -13.03443 -12.79343 -12.77400 -12.54972 -12.51452 -12.36923 -12.25763 -12.19006 -12.11313 -11.76166 -11.73181 -11.64553 -11.25043 -10.99379 -10.48295 -10.15148 -9.74764 -9.63092 -9.55085 -9.42320 -8.13340 -6.23324 0.35180 0.46135 1.41847 1.43334 1.50441 1.54393 2.01695 2.45019 2.79491 2.88875 3.19742 3.58755 3.69231 3.87874 3.93614 3.98696 4.01556 4.10750 4.12370 4.21456 4.27101 4.33171 4.37439 4.46455 4.53545 4.58802 4.65568 4.79177 4.80632 4.84755 4.88410 4.91674 4.94710 4.96750 5.00680 5.06231 5.26296 5.27459 5.35161 5.42358 5.50473 5.58149 5.59469 5.66952 5.85524 5.85989 5.93837 5.99769 6.10472 6.31419 6.40707 6.45839 6.54441 6.95505 7.13216 7.44703 8.97868 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.012444 B = 0.002204 C = 0.001996 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2249.585215 B =12698.863424 C =14024.839026 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.047 3.953 3 N -0.500 5.500 4 C 0.060 3.940 5 C 0.128 3.872 6 N -0.716 5.716 7 C 0.491 3.509 8 O -0.582 6.582 9 C 0.086 3.914 10 H 0.112 0.888 11 N -0.819 5.819 12 C -0.082 4.082 13 C 0.039 3.961 14 C -0.543 4.543 15 H 0.055 0.945 16 C 0.001 3.999 17 N -0.930 5.930 18 Si 0.959 3.041 19 H -0.271 1.271 20 H -0.284 1.284 21 H -0.267 1.267 22 C 0.078 3.922 23 C -0.154 4.154 24 C -0.125 4.125 25 C -0.123 4.123 26 C -0.125 4.125 27 C -0.074 4.074 28 C -0.105 4.105 29 H 0.047 0.953 30 H 0.059 0.941 31 H 0.070 0.930 32 H 0.081 0.919 33 H 0.043 0.957 34 H 0.081 0.919 35 H 0.057 0.943 36 H 0.066 0.934 37 H 0.059 0.941 38 H 0.414 0.586 39 H 0.347 0.653 40 H 0.345 0.655 41 H 0.041 0.959 42 H 0.067 0.933 43 H -0.005 1.005 44 H 0.006 0.994 45 H 0.262 0.738 46 H 0.123 0.877 47 H 0.136 0.864 48 H 0.142 0.858 49 H 0.140 0.860 50 H 0.063 0.937 51 H 0.071 0.929 52 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.784 -4.144 18.943 31.469 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.079 4.079 3 N -0.222 5.222 4 C -0.067 4.067 5 C 0.004 3.996 6 N -0.368 5.368 7 C 0.276 3.724 8 O -0.462 6.462 9 C -0.030 4.030 10 H 0.130 0.870 11 N -0.348 5.348 12 C -0.120 4.120 13 C 0.002 3.998 14 C -0.581 4.581 15 H 0.073 0.927 16 C -0.196 4.196 17 N -0.570 5.570 18 Si 0.784 3.216 19 H -0.196 1.196 20 H -0.210 1.210 21 H -0.192 1.192 22 C -0.016 4.016 23 C -0.174 4.174 24 C -0.144 4.144 25 C -0.141 4.141 26 C -0.143 4.143 27 C -0.074 4.074 28 C -0.162 4.162 29 H 0.066 0.934 30 H 0.078 0.922 31 H 0.089 0.911 32 H 0.099 0.901 33 H 0.061 0.939 34 H 0.100 0.900 35 H 0.075 0.925 36 H 0.084 0.916 37 H 0.077 0.923 38 H 0.251 0.749 39 H 0.160 0.840 40 H 0.159 0.841 41 H 0.060 0.940 42 H 0.086 0.914 43 H 0.013 0.987 44 H 0.024 0.976 45 H 0.071 0.929 46 H 0.140 0.860 47 H 0.154 0.846 48 H 0.160 0.840 49 H 0.157 0.843 50 H 0.082 0.918 51 H 0.090 0.910 52 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -24.678 -3.954 18.004 30.803 hybrid contribution 0.335 0.170 0.568 0.681 sum -24.344 -3.784 18.572 30.852 Atomic orbital electron populations 1.21697 0.94016 1.02128 1.01967 1.22323 0.97036 0.87054 1.01463 1.59452 1.15934 1.17841 1.28973 1.22144 0.87904 1.02317 0.94350 1.21220 0.81121 1.01410 0.95863 1.45942 1.09339 1.67275 1.14280 1.22345 0.92877 0.75501 0.81695 1.90644 1.57206 1.49166 1.49173 1.21637 0.88987 0.96484 0.95847 0.87035 1.58978 1.63650 1.06308 1.05854 1.21391 0.98176 0.92064 1.00402 1.18831 0.90453 0.94858 0.95671 1.21737 0.93115 0.95932 1.47330 0.92675 1.25897 0.96829 1.01446 0.95466 1.70102 1.01471 1.34597 1.50827 0.85546 0.77765 0.79959 0.78352 1.19636 1.20956 1.19156 1.18647 0.98450 0.96210 0.88275 1.21752 1.01119 1.00984 0.93576 1.21270 0.98746 0.96512 0.97827 1.21462 0.96747 0.96694 0.99188 1.21296 1.00791 1.00419 0.91807 1.20049 0.96635 0.94524 0.96236 1.20664 0.99575 1.01306 0.94618 0.93369 0.92193 0.91087 0.90097 0.93903 0.90020 0.92524 0.91607 0.92299 0.74942 0.84012 0.84150 0.94008 0.91399 0.98670 0.97589 0.92941 0.85952 0.84582 0.84049 0.84256 0.91841 0.91037 0.91021 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.94 9.77 71.98 0.70 -1.23 16 2 C 0.05 0.70 5.47 86.30 0.47 1.17 16 3 N -0.50 -8.34 3.41 -695.28 -2.37 -10.71 16 4 C 0.06 0.99 4.66 86.30 0.40 1.40 16 5 C 0.13 2.66 5.63 86.38 0.49 3.15 16 6 N -0.72 -16.37 5.56 -463.07 -2.57 -18.94 16 7 C 0.49 14.80 7.07 87.66 0.62 15.42 16 8 O -0.58 -21.13 16.25 -3.05 -0.05 -21.18 16 9 C 0.09 2.81 3.15 44.17 0.14 2.95 16 10 H 0.11 3.32 8.14 -2.38 -0.02 3.30 16 11 N -0.82 -27.57 8.44 -171.80 -1.45 -29.02 16 12 C -0.08 -3.28 4.78 30.59 0.15 -3.13 16 13 C 0.04 2.02 4.86 29.85 0.15 2.17 16 14 C -0.54 -30.85 9.11 25.60 0.23 -30.61 16 15 H 0.05 3.02 7.74 -2.91 -0.02 3.00 16 16 C 0.00 0.08 5.46 84.66 0.46 0.54 16 17 N -0.93 -56.71 13.29 21.45 0.28 -56.43 16 18 Si 0.96 44.52 29.54 68.60 2.03 46.55 16 19 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 20 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 21 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 22 C 0.08 1.32 3.72 38.21 0.14 1.46 16 23 C -0.15 -2.40 8.53 22.40 0.19 -2.21 16 24 C -0.12 -1.71 10.04 22.25 0.22 -1.48 16 25 C -0.12 -1.58 10.04 22.29 0.22 -1.35 16 26 C -0.12 -1.75 9.70 22.25 0.22 -1.53 16 27 C -0.07 -1.22 5.90 -19.74 -0.12 -1.33 16 28 C -0.10 -1.59 9.77 71.23 0.70 -0.89 16 29 H 0.05 0.73 7.52 -2.38 -0.02 0.71 16 30 H 0.06 0.88 7.86 -2.39 -0.02 0.86 16 31 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 32 H 0.08 1.23 5.98 -2.39 -0.01 1.22 16 33 H 0.04 0.61 7.07 -2.39 -0.02 0.59 16 34 H 0.08 1.44 8.06 -2.39 -0.02 1.42 16 35 H 0.06 0.82 7.48 -2.38 -0.02 0.80 16 36 H 0.07 1.40 6.31 -2.38 -0.02 1.39 16 37 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 38 H 0.41 7.65 8.47 -92.71 -0.79 6.86 16 39 H 0.35 9.95 9.06 -89.69 -0.81 9.14 16 40 H 0.34 11.96 8.58 -89.70 -0.77 11.19 16 41 H 0.04 1.76 8.14 -2.39 -0.02 1.74 16 42 H 0.07 2.49 8.14 -2.39 -0.02 2.47 16 43 H -0.01 -0.28 8.14 -2.39 -0.02 -0.30 16 44 H 0.01 0.33 7.75 -2.39 -0.02 0.31 16 45 H 0.26 15.04 8.31 -92.71 -0.77 14.27 16 46 H 0.12 1.70 7.14 -2.91 -0.02 1.68 16 47 H 0.14 1.33 8.06 -2.91 -0.02 1.31 16 48 H 0.14 1.16 8.06 -2.91 -0.02 1.14 16 49 H 0.14 1.41 8.06 -2.91 -0.02 1.39 16 50 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 51 H 0.07 1.19 7.01 -2.39 -0.02 1.18 16 52 H 0.07 0.85 8.09 -2.39 -0.02 0.84 16 Total: -1.00 -70.21 419.04 -0.19 -70.40 By element: Atomic # 1 Polarization: 36.29 SS G_CDS: -1.44 Total: 34.84 kcal Atomic # 6 Polarization: -20.90 SS G_CDS: 5.38 Total: -15.52 kcal Atomic # 7 Polarization: -108.99 SS G_CDS: -6.11 Total: -115.10 kcal Atomic # 8 Polarization: -21.13 SS G_CDS: -0.05 Total: -21.18 kcal Atomic # 14 Polarization: 44.52 SS G_CDS: 2.03 Total: 46.55 kcal Total: -70.21 -0.19 -70.40 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424141975.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.962 kcal (2) G-P(sol) polarization free energy of solvation -70.209 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.248 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.192 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.401 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.440 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds