Wall clock time and date at job start Tue Mar 31 2020 17:53:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 C 1.53006 * 109.47127 * 240.00501 * 2 1 3 5 5 N 1.46504 * 109.47051 * 185.00029 * 4 2 1 6 6 C 1.34774 * 119.99669 * 179.97438 * 5 4 2 7 7 O 1.21276 * 120.00291 * 359.97438 * 6 5 4 8 8 C 1.50703 * 119.99766 * 179.97438 * 6 5 4 9 9 H 1.08997 * 109.47190 * 320.00020 * 8 6 5 10 10 N 1.46898 * 109.47262 * 200.00128 * 8 6 5 11 11 C 1.53000 * 109.47354 * 79.99561 * 8 6 5 12 12 C 1.52998 * 109.47305 * 184.99967 * 11 8 6 13 13 C 1.50706 * 109.46970 * 180.02562 * 12 11 8 14 14 H 1.08002 * 119.99696 * 359.97438 * 13 12 11 15 15 C 1.37879 * 119.99603 * 180.02562 * 13 12 11 16 16 N 1.31510 * 120.00142 * 359.97438 * 15 13 12 17 17 Si 1.86801 * 119.99384 * 179.97438 * 15 13 12 18 18 H 1.48496 * 109.47371 * 90.00011 * 17 15 13 19 19 H 1.48506 * 109.46776 * 209.99620 * 17 15 13 20 20 H 1.48500 * 109.47422 * 329.99387 * 17 15 13 21 21 N 1.46894 * 109.47515 * 120.00133 * 2 1 3 22 22 C 1.46902 * 110.99790 * 58.95192 * 21 2 1 23 23 C 1.46896 * 111.00342 * 295.00322 * 21 2 1 24 24 C 1.50695 * 109.47619 * 189.99958 * 23 21 2 25 25 C 1.38243 * 119.99598 * 269.72485 * 24 23 21 26 26 C 1.38239 * 119.99471 * 179.76378 * 25 24 23 27 27 C 1.38227 * 120.00230 * 0.50729 * 26 25 24 28 28 C 1.38232 * 120.00255 * 359.74741 * 27 26 25 29 29 C 1.38235 * 120.00484 * 89.99471 * 24 23 21 30 30 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 31 31 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 33 33 H 1.08996 * 109.46945 * 304.99450 * 4 2 1 34 34 H 1.09000 * 109.47314 * 64.99572 * 4 2 1 35 35 H 0.96996 * 119.99902 * 359.97438 * 5 4 2 36 36 H 1.00897 * 111.00399 * 176.04729 * 10 8 6 37 37 H 1.00904 * 110.99760 * 299.99670 * 10 8 6 38 38 H 1.08997 * 109.47562 * 305.00789 * 11 8 6 39 39 H 1.09009 * 109.46830 * 64.99763 * 11 8 6 40 40 H 1.09003 * 109.47284 * 300.00177 * 12 11 8 41 41 H 1.08999 * 109.46799 * 60.00209 * 12 11 8 42 42 H 0.97004 * 119.99794 * 180.02562 * 16 15 13 43 43 H 1.09003 * 109.46808 * 60.00632 * 22 21 2 44 44 H 1.09004 * 109.47176 * 180.02562 * 22 21 2 45 45 H 1.08994 * 109.47263 * 300.00333 * 22 21 2 46 46 H 1.09006 * 109.46837 * 310.00141 * 23 21 2 47 47 H 1.09003 * 109.47200 * 69.99229 * 23 21 2 48 48 H 1.07993 * 119.99934 * 359.97438 * 25 24 23 49 49 H 1.08000 * 119.99639 * 180.22746 * 26 25 24 50 50 H 1.08003 * 120.00498 * 179.72516 * 27 26 25 51 51 H 1.07999 * 120.00344 * 179.97438 * 28 27 26 52 52 H 1.07996 * 119.99853 * 0.02562 * 29 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2494 5 7 3.5001 -0.8263 -1.1907 6 6 4.1730 -1.4290 -2.1908 7 8 3.5698 -1.8847 -3.1392 8 6 5.6749 -1.5367 -2.1308 9 1 6.0902 -0.6093 -1.7364 10 7 6.2032 -1.7746 -3.4807 11 6 6.0668 -2.6999 -1.2174 12 6 7.5880 -2.7322 -1.0569 13 6 7.9740 -3.8784 -0.1577 14 1 7.2105 -4.5193 0.2581 15 6 9.3016 -4.1080 0.1350 16 7 10.2311 -3.3272 -0.3709 17 14 9.7799 -5.5283 1.2502 18 1 10.0068 -6.7460 0.4312 19 1 11.0255 -5.1849 1.9823 20 1 8.6878 -5.7828 2.2237 21 7 2.0197 -0.6925 1.1993 22 6 1.5283 -2.0761 1.2458 23 6 1.6488 0.0390 2.4180 24 6 2.3680 -0.5572 3.6004 25 6 1.7823 -1.5813 4.3211 26 6 2.4442 -2.1315 5.4028 27 6 3.6870 -1.6507 5.7702 28 6 4.2704 -0.6232 5.0528 29 6 3.6109 -0.0765 3.9679 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5139 -0.8900 33 1 1.6055 -1.7197 -1.2953 34 1 1.7516 -0.1582 -2.1371 35 1 3.9824 -0.4621 -0.4320 36 1 7.2121 -1.7864 -3.4773 37 1 5.8329 -2.6293 -3.8684 38 1 5.6011 -2.5679 -0.2408 39 1 5.7278 -3.6377 -1.6577 40 1 8.0537 -2.8643 -2.0335 41 1 7.9269 -1.7944 -0.6166 42 1 11.1652 -3.4891 -0.1652 43 1 1.8763 -2.6150 0.3646 44 1 1.9054 -2.5656 2.1438 45 1 0.4386 -2.0742 1.2638 46 1 1.9297 1.0869 2.3125 47 1 0.5723 -0.0346 2.5725 48 1 0.8093 -1.9536 4.0370 49 1 1.9883 -2.9340 5.9636 50 1 4.2023 -2.0776 6.6180 51 1 5.2412 -0.2473 5.3401 52 1 4.0663 0.7268 3.4077 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424143066.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:53:03 Heat of formation + Delta-G solvation = -19.835903 kcal Electronic energy + Delta-G solvation = -29163.420467 eV Core-core repulsion = 25355.084252 eV Total energy + Delta-G solvation = -3808.336216 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.04226 -39.37192 -38.15682 -35.42663 -34.39662 -32.79260 -32.37305 -31.03068 -30.27356 -29.80990 -27.72159 -27.17493 -25.74568 -24.59586 -23.35390 -22.62354 -21.29465 -20.58457 -20.10594 -19.46616 -17.22655 -16.90635 -16.69664 -16.18878 -16.12127 -15.55839 -15.38834 -14.75632 -14.58121 -14.41556 -14.31362 -14.27304 -13.92130 -13.52224 -13.49724 -13.32085 -12.99880 -12.80581 -12.68376 -12.54001 -12.25820 -12.18542 -12.06262 -11.77379 -11.70684 -11.54001 -11.11763 -11.06950 -11.02611 -10.95249 -10.86207 -10.64303 -9.91454 -9.83428 -9.21854 -9.12754 -8.99198 -8.92850 -8.79274 -8.49172 -8.39327 -8.10070 -6.04108 -4.06477 1.22180 1.32532 3.07821 3.29812 3.35015 3.36306 3.39926 3.55591 3.97778 4.43322 4.48627 4.54067 4.67392 4.79441 4.90766 4.95120 4.98641 5.05607 5.15179 5.21374 5.28112 5.29504 5.32496 5.35432 5.39913 5.40873 5.48348 5.55965 5.64687 5.69968 5.70852 5.85666 5.88575 5.89150 5.94049 5.96922 6.34766 6.39721 6.44122 6.49077 6.61299 6.65160 6.77675 6.84145 6.92167 6.96184 7.53876 7.58575 7.69222 7.89383 7.93551 7.98286 8.36965 8.62838 8.99418 9.57980 11.06898 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.007321 B = 0.003921 C = 0.002727 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3823.816088 B = 7139.794883 C =10264.724654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.068 3.932 3 H 0.091 0.909 4 C 0.131 3.869 5 N -0.722 5.722 6 C 0.524 3.476 7 O -0.547 6.547 8 C 0.075 3.925 9 H 0.094 0.906 10 N -0.831 5.831 11 C -0.135 4.135 12 C 0.025 3.975 13 C -0.520 4.520 14 H 0.054 0.946 15 C 0.059 3.941 16 N -0.894 5.894 17 Si 0.891 3.109 18 H -0.280 1.280 19 H -0.286 1.286 20 H -0.274 1.274 21 N -0.525 5.525 22 C 0.014 3.986 23 C 0.094 3.906 24 C -0.079 4.079 25 C -0.116 4.116 26 C -0.123 4.123 27 C -0.120 4.120 28 C -0.117 4.117 29 C -0.096 4.096 30 H 0.061 0.939 31 H 0.063 0.937 32 H 0.066 0.934 33 H 0.064 0.936 34 H 0.068 0.932 35 H 0.408 0.592 36 H 0.353 0.647 37 H 0.344 0.656 38 H 0.058 0.942 39 H 0.052 0.948 40 H 0.017 0.983 41 H 0.018 0.982 42 H 0.261 0.739 43 H 0.073 0.927 44 H 0.074 0.926 45 H 0.029 0.971 46 H 0.082 0.918 47 H 0.044 0.956 48 H 0.115 0.885 49 H 0.118 0.882 50 H 0.119 0.881 51 H 0.123 0.877 52 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.883 9.176 8.883 23.632 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.245 4.245 2 C -0.041 4.041 3 H 0.109 0.891 4 C 0.006 3.994 5 N -0.375 5.375 6 C 0.311 3.689 7 O -0.423 6.423 8 C -0.040 4.040 9 H 0.112 0.888 10 N -0.363 5.363 11 C -0.175 4.175 12 C -0.012 4.012 13 C -0.559 4.559 14 H 0.072 0.928 15 C -0.143 4.143 16 N -0.533 5.533 17 Si 0.718 3.282 18 H -0.207 1.207 19 H -0.212 1.212 20 H -0.199 1.199 21 N -0.249 5.249 22 C -0.134 4.134 23 C -0.033 4.033 24 C -0.079 4.079 25 C -0.134 4.134 26 C -0.141 4.141 27 C -0.138 4.138 28 C -0.135 4.135 29 C -0.114 4.114 30 H 0.080 0.920 31 H 0.082 0.918 32 H 0.085 0.915 33 H 0.082 0.918 34 H 0.086 0.914 35 H 0.244 0.756 36 H 0.168 0.832 37 H 0.158 0.842 38 H 0.076 0.924 39 H 0.071 0.929 40 H 0.035 0.965 41 H 0.036 0.964 42 H 0.070 0.930 43 H 0.092 0.908 44 H 0.092 0.908 45 H 0.047 0.953 46 H 0.101 0.899 47 H 0.062 0.938 48 H 0.134 0.866 49 H 0.137 0.863 50 H 0.137 0.863 51 H 0.141 0.859 52 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -19.979 9.558 7.949 23.531 hybrid contribution 0.152 -1.583 1.565 2.231 sum -19.827 7.975 9.513 23.393 Atomic orbital electron populations 1.22396 0.96556 1.02799 1.02704 1.22018 0.93394 0.98729 0.89976 0.89112 1.21292 0.81484 1.00470 0.96161 1.45819 1.06766 1.60712 1.24216 1.20859 0.90281 0.76428 0.81362 1.90617 1.70451 1.47769 1.33486 1.21446 0.90120 1.01017 0.91378 0.88759 1.58749 1.13543 1.44237 1.19777 1.22349 1.01441 0.95652 0.98077 1.19095 0.87702 0.97387 0.97043 1.21184 0.92024 1.13390 1.29256 0.92785 1.24995 0.96680 0.96419 0.96167 1.69951 1.00466 1.38193 1.44685 0.86614 0.77987 0.82674 0.80875 1.20659 1.21176 1.19887 1.62176 1.59298 1.02564 1.00830 1.22558 0.97542 0.89556 1.03755 1.21046 0.96922 0.97722 0.87634 1.19671 0.95384 0.96891 0.95998 1.21005 0.99893 0.96600 0.95918 1.21091 0.95546 0.99989 0.97455 1.21169 0.95590 0.97001 1.00019 1.21205 0.99831 0.96755 0.95747 1.21032 0.94036 1.00001 0.96369 0.92032 0.91829 0.91535 0.91803 0.91376 0.75622 0.83204 0.84246 0.92355 0.92938 0.96518 0.96363 0.92956 0.90841 0.90765 0.95301 0.89931 0.93801 0.86650 0.86348 0.86254 0.85945 0.85891 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.27 8.50 37.16 0.32 -0.96 16 2 C 0.07 0.56 2.50 -67.71 -0.17 0.40 16 3 H 0.09 0.70 8.03 -51.93 -0.42 0.28 16 4 C 0.13 1.46 4.69 -4.04 -0.02 1.44 16 5 N -0.72 -9.64 5.39 -60.29 -0.32 -9.97 16 6 C 0.52 8.95 7.08 -10.99 -0.08 8.87 16 7 O -0.55 -10.97 16.25 5.56 0.09 -10.88 16 8 C 0.08 1.33 3.21 -68.86 -0.22 1.11 16 9 H 0.09 1.58 8.14 -51.93 -0.42 1.16 16 10 N -0.83 -14.88 8.94 -5.65 -0.05 -14.93 16 11 C -0.14 -2.75 4.78 -26.73 -0.13 -2.88 16 12 C 0.02 0.61 4.74 -27.88 -0.13 0.48 16 13 C -0.52 -14.50 9.11 -34.44 -0.31 -14.81 16 14 H 0.05 1.49 7.74 -52.49 -0.41 1.08 16 15 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 16 N -0.89 -26.31 13.29 55.43 0.74 -25.57 16 17 Si 0.89 21.55 29.54 -169.99 -5.02 16.53 16 18 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 19 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 20 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 21 N -0.53 -4.87 4.18 -236.33 -0.99 -5.86 16 22 C 0.01 0.14 8.48 60.07 0.51 0.64 16 23 C 0.09 0.77 4.56 -4.98 -0.02 0.75 16 24 C -0.08 -0.77 4.88 -104.62 -0.51 -1.29 16 25 C -0.12 -1.11 7.92 -39.58 -0.31 -1.42 16 26 C -0.12 -1.20 10.05 -39.59 -0.40 -1.59 16 27 C -0.12 -1.22 10.05 -39.59 -0.40 -1.62 16 28 C -0.12 -1.24 10.05 -39.58 -0.40 -1.64 16 29 C -0.10 -1.00 9.70 -39.58 -0.38 -1.39 16 30 H 0.06 0.38 6.75 -51.93 -0.35 0.03 16 31 H 0.06 0.46 6.39 -51.93 -0.33 0.13 16 32 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.06 0.79 6.70 -51.93 -0.35 0.44 16 34 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.41 5.08 8.14 -40.82 -0.33 4.75 16 36 H 0.35 6.32 7.55 -39.29 -0.30 6.02 16 37 H 0.34 6.26 8.58 -39.29 -0.34 5.93 16 38 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 39 H 0.05 1.12 8.14 -51.92 -0.42 0.69 16 40 H 0.02 0.43 6.87 -51.93 -0.36 0.07 16 41 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 42 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 43 H 0.07 0.85 6.44 -51.93 -0.33 0.51 16 44 H 0.07 0.80 5.91 -51.93 -0.31 0.49 16 45 H 0.03 0.24 6.28 -51.93 -0.33 -0.08 16 46 H 0.08 0.61 7.94 -51.93 -0.41 0.19 16 47 H 0.04 0.33 6.88 -51.93 -0.36 -0.03 16 48 H 0.12 0.93 8.00 -52.49 -0.42 0.51 16 49 H 0.12 0.93 8.06 -52.49 -0.42 0.51 16 50 H 0.12 1.02 8.06 -52.48 -0.42 0.60 16 51 H 0.12 1.14 8.06 -52.49 -0.42 0.72 16 52 H 0.12 1.15 8.06 -52.49 -0.42 0.73 16 LS Contribution 412.24 15.07 6.21 6.21 Total: -1.00 -32.06 412.24 -10.80 -42.85 By element: Atomic # 1 Polarization: 22.64 SS G_CDS: -8.70 Total: 13.95 kcal Atomic # 6 Polarization: -9.57 SS G_CDS: -2.76 Total: -12.33 kcal Atomic # 7 Polarization: -55.70 SS G_CDS: -0.63 Total: -56.33 kcal Atomic # 8 Polarization: -10.97 SS G_CDS: 0.09 Total: -10.88 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.53 kcal Total LS contribution 6.21 Total: 6.21 kcal Total: -32.06 -10.80 -42.85 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424143066.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.019 kcal (2) G-P(sol) polarization free energy of solvation -32.056 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.037 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.799 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.855 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.836 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds