Wall clock time and date at job start Tue Mar 31 2020 17:53:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 C 1.53006 * 109.47127 * 240.00501 * 2 1 3 5 5 N 1.46504 * 109.47051 * 185.00029 * 4 2 1 6 6 C 1.34774 * 119.99669 * 179.97438 * 5 4 2 7 7 O 1.21276 * 120.00291 * 359.97438 * 6 5 4 8 8 C 1.50703 * 119.99766 * 179.97438 * 6 5 4 9 9 H 1.08997 * 109.47190 * 320.00020 * 8 6 5 10 10 N 1.46898 * 109.47262 * 200.00128 * 8 6 5 11 11 C 1.53000 * 109.47354 * 79.99561 * 8 6 5 12 12 C 1.52998 * 109.47305 * 184.99967 * 11 8 6 13 13 C 1.50706 * 109.46970 * 180.02562 * 12 11 8 14 14 H 1.08002 * 119.99696 * 359.97438 * 13 12 11 15 15 C 1.37879 * 119.99603 * 180.02562 * 13 12 11 16 16 N 1.31510 * 120.00142 * 359.97438 * 15 13 12 17 17 Si 1.86801 * 119.99384 * 179.97438 * 15 13 12 18 18 H 1.48496 * 109.47371 * 90.00011 * 17 15 13 19 19 H 1.48506 * 109.46776 * 209.99620 * 17 15 13 20 20 H 1.48500 * 109.47422 * 329.99387 * 17 15 13 21 21 N 1.46894 * 109.47515 * 120.00133 * 2 1 3 22 22 C 1.46902 * 110.99790 * 58.95192 * 21 2 1 23 23 C 1.46896 * 111.00342 * 295.00322 * 21 2 1 24 24 C 1.50695 * 109.47619 * 189.99958 * 23 21 2 25 25 C 1.38243 * 119.99598 * 269.72485 * 24 23 21 26 26 C 1.38239 * 119.99471 * 179.76378 * 25 24 23 27 27 C 1.38227 * 120.00230 * 0.50729 * 26 25 24 28 28 C 1.38232 * 120.00255 * 359.74741 * 27 26 25 29 29 C 1.38235 * 120.00484 * 89.99471 * 24 23 21 30 30 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 31 31 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 33 33 H 1.08996 * 109.46945 * 304.99450 * 4 2 1 34 34 H 1.09000 * 109.47314 * 64.99572 * 4 2 1 35 35 H 0.96996 * 119.99902 * 359.97438 * 5 4 2 36 36 H 1.00897 * 111.00399 * 176.04729 * 10 8 6 37 37 H 1.00904 * 110.99760 * 299.99670 * 10 8 6 38 38 H 1.08997 * 109.47562 * 305.00789 * 11 8 6 39 39 H 1.09009 * 109.46830 * 64.99763 * 11 8 6 40 40 H 1.09003 * 109.47284 * 300.00177 * 12 11 8 41 41 H 1.08999 * 109.46799 * 60.00209 * 12 11 8 42 42 H 0.97004 * 119.99794 * 180.02562 * 16 15 13 43 43 H 1.09003 * 109.46808 * 60.00632 * 22 21 2 44 44 H 1.09004 * 109.47176 * 180.02562 * 22 21 2 45 45 H 1.08994 * 109.47263 * 300.00333 * 22 21 2 46 46 H 1.09006 * 109.46837 * 310.00141 * 23 21 2 47 47 H 1.09003 * 109.47200 * 69.99229 * 23 21 2 48 48 H 1.07993 * 119.99934 * 359.97438 * 25 24 23 49 49 H 1.08000 * 119.99639 * 180.22746 * 26 25 24 50 50 H 1.08003 * 120.00498 * 179.72516 * 27 26 25 51 51 H 1.07999 * 120.00344 * 179.97438 * 28 27 26 52 52 H 1.07996 * 119.99853 * 0.02562 * 29 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2494 5 7 3.5001 -0.8263 -1.1907 6 6 4.1730 -1.4290 -2.1908 7 8 3.5698 -1.8847 -3.1392 8 6 5.6749 -1.5367 -2.1308 9 1 6.0902 -0.6093 -1.7364 10 7 6.2032 -1.7746 -3.4807 11 6 6.0668 -2.6999 -1.2174 12 6 7.5880 -2.7322 -1.0569 13 6 7.9740 -3.8784 -0.1577 14 1 7.2105 -4.5193 0.2581 15 6 9.3016 -4.1080 0.1350 16 7 10.2311 -3.3272 -0.3709 17 14 9.7799 -5.5283 1.2502 18 1 10.0068 -6.7460 0.4312 19 1 11.0255 -5.1849 1.9823 20 1 8.6878 -5.7828 2.2237 21 7 2.0197 -0.6925 1.1993 22 6 1.5283 -2.0761 1.2458 23 6 1.6488 0.0390 2.4180 24 6 2.3680 -0.5572 3.6004 25 6 1.7823 -1.5813 4.3211 26 6 2.4442 -2.1315 5.4028 27 6 3.6870 -1.6507 5.7702 28 6 4.2704 -0.6232 5.0528 29 6 3.6109 -0.0765 3.9679 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5139 -0.8900 33 1 1.6055 -1.7197 -1.2953 34 1 1.7516 -0.1582 -2.1371 35 1 3.9824 -0.4621 -0.4320 36 1 7.2121 -1.7864 -3.4773 37 1 5.8329 -2.6293 -3.8684 38 1 5.6011 -2.5679 -0.2408 39 1 5.7278 -3.6377 -1.6577 40 1 8.0537 -2.8643 -2.0335 41 1 7.9269 -1.7944 -0.6166 42 1 11.1652 -3.4891 -0.1652 43 1 1.8763 -2.6150 0.3646 44 1 1.9054 -2.5656 2.1438 45 1 0.4386 -2.0742 1.2638 46 1 1.9297 1.0869 2.3125 47 1 0.5723 -0.0346 2.5725 48 1 0.8093 -1.9536 4.0370 49 1 1.9883 -2.9340 5.9636 50 1 4.2023 -2.0776 6.6180 51 1 5.2412 -0.2473 5.3401 52 1 4.0663 0.7268 3.4077 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000424143066.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:53:02 Heat of formation + Delta-G solvation = -41.420976 kcal Electronic energy + Delta-G solvation = -29164.356466 eV Core-core repulsion = 25355.084252 eV Total energy + Delta-G solvation = -3809.272215 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.04973 -40.38785 -38.99328 -37.04681 -35.49883 -34.81695 -33.20158 -31.76343 -31.66363 -31.00899 -28.80549 -28.12118 -27.11456 -25.60745 -24.83148 -23.36177 -22.34313 -22.03410 -21.12626 -20.57849 -18.80982 -18.03978 -17.67027 -17.44817 -17.23861 -16.55072 -16.28763 -16.22572 -15.92659 -15.79559 -15.50759 -15.08671 -15.00679 -14.79272 -14.59032 -14.21992 -14.21195 -14.03124 -13.78871 -13.47245 -13.40417 -13.37412 -12.98595 -12.92001 -12.90165 -12.64390 -12.51358 -12.48389 -12.36059 -11.82926 -11.79170 -11.76169 -11.69768 -11.67383 -11.29445 -10.69599 -10.55083 -9.98906 -9.74294 -9.65534 -9.61717 -9.18507 -8.20458 -6.30350 0.47550 0.57112 1.39171 1.39372 1.50288 1.69312 2.23593 2.40518 2.76458 3.13109 3.23883 3.74368 3.78307 3.84256 3.92302 4.00982 4.12223 4.16880 4.21098 4.28620 4.30473 4.31976 4.37259 4.41699 4.60211 4.62779 4.68023 4.69684 4.73608 4.78017 4.81178 4.87124 4.88647 5.04384 5.10478 5.11937 5.18382 5.22196 5.29511 5.47484 5.54179 5.61323 5.67421 5.69306 5.74474 5.81835 6.07950 6.09522 6.10923 6.20267 6.22954 6.49507 6.65877 6.84413 7.33138 7.38360 8.90401 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.007321 B = 0.003921 C = 0.002727 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3823.816088 B = 7139.794883 C =10264.724654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.077 3.923 3 H 0.104 0.896 4 C 0.129 3.871 5 N -0.705 5.705 6 C 0.525 3.475 7 O -0.578 6.578 8 C 0.081 3.919 9 H 0.106 0.894 10 N -0.829 5.829 11 C -0.116 4.116 12 C 0.032 3.968 13 C -0.543 4.543 14 H 0.051 0.949 15 C 0.008 3.992 16 N -0.926 5.926 17 Si 0.956 3.044 18 H -0.275 1.275 19 H -0.280 1.280 20 H -0.267 1.267 21 N -0.537 5.537 22 C 0.019 3.981 23 C 0.098 3.902 24 C -0.085 4.085 25 C -0.122 4.122 26 C -0.133 4.133 27 C -0.134 4.134 28 C -0.136 4.136 29 C -0.111 4.111 30 H 0.074 0.926 31 H 0.058 0.942 32 H 0.073 0.927 33 H 0.053 0.947 34 H 0.069 0.931 35 H 0.415 0.585 36 H 0.351 0.649 37 H 0.343 0.657 38 H 0.061 0.939 39 H 0.041 0.959 40 H 0.002 0.998 41 H 0.001 0.999 42 H 0.264 0.736 43 H 0.052 0.948 44 H 0.063 0.937 45 H 0.045 0.955 46 H 0.094 0.906 47 H 0.058 0.942 48 H 0.130 0.870 49 H 0.135 0.865 50 H 0.130 0.870 51 H 0.127 0.873 52 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.353 9.523 9.871 25.379 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C -0.032 4.032 3 H 0.122 0.878 4 C 0.005 3.995 5 N -0.357 5.357 6 C 0.311 3.689 7 O -0.458 6.458 8 C -0.034 4.034 9 H 0.124 0.876 10 N -0.360 5.360 11 C -0.156 4.156 12 C -0.005 4.005 13 C -0.581 4.581 14 H 0.070 0.930 15 C -0.191 4.191 16 N -0.566 5.566 17 Si 0.781 3.219 18 H -0.200 1.200 19 H -0.205 1.205 20 H -0.192 1.192 21 N -0.261 5.261 22 C -0.129 4.129 23 C -0.028 4.028 24 C -0.085 4.085 25 C -0.140 4.140 26 C -0.151 4.151 27 C -0.153 4.153 28 C -0.154 4.154 29 C -0.130 4.130 30 H 0.093 0.907 31 H 0.077 0.923 32 H 0.092 0.908 33 H 0.071 0.929 34 H 0.087 0.913 35 H 0.251 0.749 36 H 0.166 0.834 37 H 0.156 0.844 38 H 0.080 0.920 39 H 0.059 0.941 40 H 0.021 0.979 41 H 0.020 0.980 42 H 0.073 0.927 43 H 0.071 0.929 44 H 0.082 0.918 45 H 0.063 0.937 46 H 0.112 0.888 47 H 0.076 0.924 48 H 0.148 0.852 49 H 0.153 0.847 50 H 0.148 0.852 51 H 0.145 0.855 52 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -21.471 9.928 8.966 25.297 hybrid contribution 0.602 -1.670 1.270 2.183 sum -20.869 8.258 10.236 24.667 Atomic orbital electron populations 1.22344 0.94968 1.02819 1.03739 1.21963 0.94484 0.98593 0.88139 0.87774 1.21454 0.79704 1.00383 0.97938 1.45736 1.07898 1.58974 1.23101 1.20647 0.89818 0.76680 0.81751 1.90605 1.70799 1.49474 1.34935 1.21384 0.91144 1.00249 0.90628 0.87610 1.58768 1.13428 1.44074 1.19761 1.22074 0.98272 0.96403 0.98862 1.18953 0.90487 0.95607 0.95500 1.21587 0.92371 1.14267 1.29832 0.93022 1.25825 0.96693 0.98992 0.97587 1.70059 1.00841 1.39805 1.45881 0.85584 0.77847 0.79427 0.79039 1.20023 1.20503 1.19164 1.62124 1.59911 1.02429 1.01599 1.22442 0.98466 0.89792 1.02185 1.21054 0.97476 0.97922 0.86368 1.19889 0.95248 0.96892 0.96509 1.21253 1.00536 0.96449 0.95757 1.21381 0.95504 1.00411 0.97755 1.21417 0.96117 0.97171 1.00557 1.21424 1.00390 0.97304 0.96266 1.21237 0.94616 1.00502 0.96626 0.90726 0.92305 0.90781 0.92872 0.91251 0.74857 0.83379 0.84433 0.92007 0.94063 0.97949 0.98042 0.92734 0.92887 0.91776 0.93683 0.88754 0.92437 0.85164 0.84736 0.85163 0.85462 0.85289 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.95 8.50 71.98 0.61 -1.33 16 2 C 0.08 1.10 2.50 44.92 0.11 1.21 16 3 H 0.10 1.28 8.03 -2.39 -0.02 1.26 16 4 C 0.13 2.70 4.69 86.38 0.40 3.11 16 5 N -0.71 -18.01 5.39 -463.05 -2.50 -20.50 16 6 C 0.52 17.59 7.08 87.66 0.62 18.21 16 7 O -0.58 -23.04 16.25 -3.02 -0.05 -23.09 16 8 C 0.08 2.84 3.21 44.17 0.14 2.98 16 9 H 0.11 3.47 8.14 -2.39 -0.02 3.45 16 10 N -0.83 -29.70 8.94 -171.80 -1.54 -31.23 16 11 C -0.12 -4.73 4.78 30.59 0.15 -4.58 16 12 C 0.03 1.59 4.74 29.85 0.14 1.74 16 13 C -0.54 -30.42 9.11 25.60 0.23 -30.19 16 14 H 0.05 2.85 7.74 -2.91 -0.02 2.83 16 15 C 0.01 0.43 5.46 84.66 0.46 0.89 16 16 N -0.93 -54.84 13.29 21.45 0.28 -54.56 16 17 Si 0.96 44.02 29.54 68.60 2.03 46.04 16 18 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 19 H -0.28 -12.51 7.11 99.48 0.71 -11.81 16 20 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 21 N -0.54 -8.87 4.18 -901.63 -3.77 -12.65 16 22 C 0.02 0.35 8.48 127.69 1.08 1.44 16 23 C 0.10 1.37 4.56 85.56 0.39 1.76 16 24 C -0.08 -1.54 4.88 -19.87 -0.10 -1.64 16 25 C -0.12 -2.15 7.92 22.27 0.18 -1.97 16 26 C -0.13 -2.44 10.05 22.27 0.22 -2.22 16 27 C -0.13 -2.67 10.05 22.27 0.22 -2.45 16 28 C -0.14 -2.84 10.05 22.27 0.22 -2.62 16 29 C -0.11 -2.24 9.70 22.27 0.22 -2.02 16 30 H 0.07 0.65 6.75 -2.39 -0.02 0.64 16 31 H 0.06 0.71 6.39 -2.39 -0.02 0.70 16 32 H 0.07 0.72 8.14 -2.38 -0.02 0.70 16 33 H 0.05 1.26 6.70 -2.39 -0.02 1.25 16 34 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 35 H 0.41 9.68 8.14 -92.71 -0.75 8.92 16 36 H 0.35 12.71 7.55 -89.70 -0.68 12.03 16 37 H 0.34 12.55 8.58 -89.69 -0.77 11.78 16 38 H 0.06 2.45 8.14 -2.39 -0.02 2.43 16 39 H 0.04 1.76 8.14 -2.38 -0.02 1.74 16 40 H 0.00 0.12 6.87 -2.39 -0.02 0.10 16 41 H 0.00 0.06 8.14 -2.39 -0.02 0.05 16 42 H 0.26 14.74 8.31 -92.71 -0.77 13.97 16 43 H 0.05 1.19 6.44 -2.39 -0.02 1.18 16 44 H 0.06 1.31 5.91 -2.38 -0.01 1.30 16 45 H 0.04 0.67 6.28 -2.39 -0.02 0.65 16 46 H 0.09 1.11 7.94 -2.38 -0.02 1.09 16 47 H 0.06 0.66 6.88 -2.39 -0.02 0.65 16 48 H 0.13 1.83 8.00 -2.91 -0.02 1.81 16 49 H 0.13 1.92 8.06 -2.91 -0.02 1.90 16 50 H 0.13 2.16 8.06 -2.91 -0.02 2.13 16 51 H 0.13 2.38 8.06 -2.91 -0.02 2.36 16 52 H 0.13 2.31 8.06 -2.91 -0.02 2.29 16 Total: -1.00 -68.17 412.24 -1.50 -69.67 By element: Atomic # 1 Polarization: 45.29 SS G_CDS: -1.27 Total: 44.02 kcal Atomic # 6 Polarization: -23.01 SS G_CDS: 5.31 Total: -17.69 kcal Atomic # 7 Polarization: -111.42 SS G_CDS: -7.52 Total: -118.94 kcal Atomic # 8 Polarization: -23.04 SS G_CDS: -0.05 Total: -23.09 kcal Atomic # 14 Polarization: 44.02 SS G_CDS: 2.03 Total: 46.04 kcal Total: -68.17 -1.50 -69.67 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424143066.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.248 kcal (2) G-P(sol) polarization free energy of solvation -68.172 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.924 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.497 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.669 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.421 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds