Wall clock time and date at job start Tue Mar 31 2020 18:28:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46502 * 109.47242 * 2 1 4 4 C 1.46500 * 119.99878 * 270.00191 * 3 2 1 5 5 C 1.53000 * 109.47125 * 269.99706 * 4 3 2 6 6 N 1.46500 * 109.47125 * 179.97438 * 5 4 3 7 7 C 1.34776 * 120.00057 * 180.02562 * 6 5 4 8 8 O 1.21287 * 119.99963 * 0.02562 * 7 6 5 9 9 C 1.50697 * 120.00327 * 179.97438 * 7 6 5 10 10 H 1.09005 * 109.47162 * 39.99989 * 9 7 6 11 11 N 1.46904 * 109.47353 * 160.00074 * 9 7 6 12 12 C 1.53004 * 109.47367 * 280.00157 * 9 7 6 13 13 C 1.52999 * 109.47259 * 174.99627 * 12 9 7 14 14 C 1.50697 * 109.47138 * 180.02562 * 13 12 9 15 15 H 1.08001 * 119.99809 * 0.02562 * 14 13 12 16 16 C 1.37874 * 119.99891 * 180.02562 * 14 13 12 17 17 N 1.31520 * 119.99808 * 179.97438 * 16 14 13 18 18 Si 1.86806 * 120.00335 * 0.02562 * 16 14 13 19 19 H 1.48497 * 109.46939 * 89.99703 * 18 16 14 20 20 H 1.48501 * 109.47217 * 210.00025 * 18 16 14 21 21 H 1.48505 * 109.46438 * 329.99852 * 18 16 14 22 22 C 1.39666 * 120.00110 * 89.99970 * 3 2 1 23 23 C 1.38937 * 120.07615 * 180.23332 * 22 3 2 24 24 C 1.38081 * 119.92453 * 180.27825 * 23 22 3 25 25 C 1.38308 * 120.07401 * 359.48697 * 24 23 22 26 26 C 1.38269 * 120.15155 * 0.25953 * 25 24 23 27 27 C 1.50699 * 119.96415 * 180.02562 * 26 25 24 28 28 C 1.38121 * 120.07065 * 359.97438 * 26 25 24 29 29 H 1.08999 * 109.46993 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.46860 * 300.00037 * 1 2 3 31 31 H 1.09004 * 109.47369 * 60.00057 * 1 2 3 32 32 H 1.09000 * 109.46860 * 239.99962 * 2 1 3 33 33 H 1.08996 * 109.47514 * 120.00226 * 2 1 3 34 34 H 1.08999 * 109.47368 * 30.00075 * 4 3 2 35 35 H 1.09000 * 109.47489 * 150.00148 * 4 3 2 36 36 H 1.08999 * 109.47299 * 300.00411 * 5 4 3 37 37 H 1.09006 * 109.47146 * 60.00262 * 5 4 3 38 38 H 0.96998 * 120.00367 * 0.02562 * 6 5 4 39 39 H 1.00899 * 110.99481 * 296.04839 * 11 9 7 40 40 H 1.00898 * 110.99782 * 60.00187 * 11 9 7 41 41 H 1.08994 * 109.46951 * 295.00182 * 12 9 7 42 42 H 1.09001 * 109.46774 * 54.99577 * 12 9 7 43 43 H 1.09002 * 109.47005 * 300.00028 * 13 12 9 44 44 H 1.09000 * 109.46823 * 59.99970 * 13 12 9 45 45 H 0.96999 * 119.99424 * 180.02562 * 17 16 14 46 46 H 1.07998 * 120.03482 * 0.02562 * 23 22 3 47 47 H 1.08002 * 119.96548 * 179.77227 * 24 23 22 48 48 H 1.08004 * 119.92377 * 180.23461 * 25 24 23 49 49 H 1.08998 * 109.47167 * 89.99479 * 27 26 25 50 50 H 1.09002 * 109.47050 * 210.00251 * 27 26 25 51 51 H 1.09008 * 109.47029 * 329.99670 * 27 26 25 52 52 H 1.08007 * 120.03411 * 179.97438 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2625 2.0718 -1.2687 5 6 3.7075 1.8314 -1.7104 6 7 3.9514 2.5215 -2.9795 7 6 5.1640 2.4496 -3.5634 8 8 6.0531 1.8132 -3.0385 9 6 5.4148 3.1590 -4.8691 10 1 4.9239 4.1321 -4.8541 11 7 6.8602 3.3425 -5.0570 12 6 4.8532 2.3222 -6.0203 13 6 4.9957 3.0977 -7.3315 14 6 4.4419 2.2738 -8.4652 15 1 4.0292 1.2950 -8.2701 16 6 4.4622 2.7694 -9.7516 17 7 3.9793 2.0501 -10.7412 18 14 5.1767 4.4621 -10.0893 19 1 6.6277 4.3379 -10.3795 20 1 4.4880 5.0659 -11.2582 21 1 4.9823 5.3279 -8.8986 22 6 2.2511 2.0396 1.2095 23 6 2.7097 3.3512 1.2114 24 6 2.9443 3.9972 2.4090 25 6 2.7132 3.3437 3.6058 26 6 2.2519 2.0403 3.6077 27 6 2.0010 1.3325 4.9143 28 6 2.0197 1.3866 2.4133 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8899 34 1 1.5817 1.6878 -2.0284 35 1 2.0956 3.1411 -1.1385 36 1 4.3883 2.2155 -0.9508 37 1 3.8745 0.7621 -1.8408 38 1 3.2403 3.0302 -3.3995 39 1 7.2436 3.9456 -4.3446 40 1 7.3382 2.4542 -5.0744 41 1 5.4047 1.3847 -6.0909 42 1 3.7999 2.1109 -5.8357 43 1 4.4440 4.0352 -7.2609 44 1 6.0490 3.3090 -7.5160 45 1 3.9940 2.3987 -11.6462 46 1 2.8863 3.8634 0.2771 47 1 3.3042 5.0155 2.4111 48 1 2.8939 3.8527 4.5412 49 1 0.9718 1.5048 5.2290 50 1 2.1676 0.2630 4.7859 51 1 2.6823 1.7179 5.6729 52 1 1.6598 0.3683 2.4154 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424145553.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:28:48 Heat of formation + Delta-G solvation = -22.288077 kcal Electronic energy + Delta-G solvation = -28068.027497 eV Core-core repulsion = 24259.584947 eV Total energy + Delta-G solvation = -3808.442550 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 1.49 seconds Orbital eigenvalues (eV) -40.25202 -39.73095 -37.41871 -35.48225 -34.89299 -33.11332 -32.77138 -31.45257 -30.87263 -30.49495 -28.01599 -27.10719 -26.48347 -24.28021 -23.62905 -22.62405 -21.70846 -20.70425 -20.23012 -19.74087 -17.78607 -17.24262 -16.78225 -16.52262 -16.09278 -15.82309 -15.49947 -15.20737 -14.85003 -14.74385 -14.21995 -14.14785 -14.06241 -13.81437 -13.71554 -13.56395 -13.37158 -13.14630 -12.63011 -12.59235 -12.44478 -12.38076 -12.24062 -12.23508 -11.78817 -11.63221 -11.60021 -11.40634 -11.02944 -10.97805 -10.88796 -10.40007 -10.11048 -10.02093 -9.72844 -9.61149 -9.17604 -9.12536 -8.95308 -8.53098 -8.41663 -7.59905 -6.00593 -3.98259 1.18178 1.37087 2.54418 2.68759 3.35992 3.36730 3.43266 3.48422 3.62145 4.41162 4.46919 4.50228 4.55650 4.63658 4.72897 4.76157 4.86981 4.92045 5.00551 5.02182 5.05189 5.11499 5.18346 5.22978 5.27977 5.33143 5.35863 5.38851 5.47206 5.49178 5.53994 5.65058 5.66717 5.70418 5.81276 5.83836 6.04650 6.25882 6.29026 6.32645 6.44475 6.46029 6.62367 6.85758 6.93893 7.21050 7.22436 7.36869 7.46442 7.56330 7.64945 7.85236 8.22059 8.56726 9.03950 9.62421 11.12837 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.019063 B = 0.002001 C = 0.001905 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1468.489873 B =13988.978914 C =14692.013419 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.117 3.883 3 N -0.623 5.623 4 C 0.113 3.887 5 C 0.100 3.900 6 N -0.730 5.730 7 C 0.485 3.515 8 O -0.551 6.551 9 C 0.075 3.925 10 H 0.098 0.902 11 N -0.811 5.811 12 C -0.087 4.087 13 C -0.004 4.004 14 C -0.521 4.521 15 H 0.069 0.931 16 C 0.065 3.935 17 N -0.906 5.906 18 Si 0.883 3.117 19 H -0.277 1.277 20 H -0.291 1.291 21 H -0.264 1.264 22 C 0.221 3.779 23 C -0.201 4.201 24 C -0.069 4.069 25 C -0.181 4.181 26 C -0.043 4.043 27 C -0.115 4.115 28 C -0.197 4.197 29 H 0.064 0.936 30 H 0.058 0.942 31 H 0.058 0.942 32 H 0.076 0.924 33 H 0.076 0.924 34 H 0.083 0.917 35 H 0.082 0.918 36 H 0.067 0.933 37 H 0.066 0.934 38 H 0.403 0.597 39 H 0.335 0.665 40 H 0.350 0.650 41 H 0.059 0.941 42 H 0.059 0.941 43 H 0.013 0.987 44 H 0.029 0.971 45 H 0.262 0.738 46 H 0.121 0.879 47 H 0.119 0.881 48 H 0.115 0.885 49 H 0.069 0.931 50 H 0.064 0.936 51 H 0.066 0.934 52 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.043 0.850 30.624 31.435 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.006 4.006 3 N -0.333 5.333 4 C -0.011 4.011 5 C -0.026 4.026 6 N -0.383 5.383 7 C 0.270 3.730 8 O -0.428 6.428 9 C -0.041 4.041 10 H 0.116 0.884 11 N -0.339 5.339 12 C -0.125 4.125 13 C -0.042 4.042 14 C -0.559 4.559 15 H 0.087 0.913 16 C -0.136 4.136 17 N -0.545 5.545 18 Si 0.711 3.289 19 H -0.203 1.203 20 H -0.217 1.217 21 H -0.189 1.189 22 C 0.120 3.880 23 C -0.224 4.224 24 C -0.088 4.088 25 C -0.201 4.201 26 C -0.043 4.043 27 C -0.171 4.171 28 C -0.219 4.219 29 H 0.083 0.917 30 H 0.077 0.923 31 H 0.077 0.923 32 H 0.095 0.905 33 H 0.094 0.906 34 H 0.102 0.898 35 H 0.101 0.899 36 H 0.085 0.915 37 H 0.084 0.916 38 H 0.237 0.763 39 H 0.147 0.853 40 H 0.164 0.836 41 H 0.077 0.923 42 H 0.078 0.922 43 H 0.031 0.969 44 H 0.048 0.952 45 H 0.072 0.928 46 H 0.139 0.861 47 H 0.137 0.863 48 H 0.134 0.866 49 H 0.088 0.912 50 H 0.083 0.917 51 H 0.085 0.915 52 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -6.646 0.610 29.937 30.672 hybrid contribution 0.041 0.567 0.395 0.692 sum -6.605 1.178 30.332 31.065 Atomic orbital electron populations 1.22220 0.96139 1.02111 1.02571 1.21447 0.94140 0.82052 1.02958 1.46422 1.71192 1.13355 1.02332 1.21538 0.95250 0.98474 0.85845 1.21753 0.96788 0.98062 0.86010 1.46033 1.14296 1.54119 1.23898 1.22644 0.81641 0.80935 0.87751 1.90665 1.44053 1.42515 1.65569 1.21867 0.91652 0.99888 0.90644 0.88383 1.59037 1.01549 1.20095 1.53222 1.21468 0.99145 0.98225 0.93699 1.19485 0.97682 0.95339 0.91685 1.21177 1.39827 1.03986 0.90960 0.91331 1.25023 0.94913 0.97442 0.96183 1.69929 1.46850 1.37750 1.00011 0.86726 0.79436 0.85002 0.77772 1.20289 1.21719 1.18899 1.17804 0.93207 0.91374 0.85603 1.20705 1.08784 0.94142 0.98731 1.20876 0.96808 0.99153 0.91937 1.20781 1.06309 0.95130 0.97852 1.19647 0.96122 0.94049 0.94512 1.20800 1.02030 1.00077 0.94235 1.20521 1.10121 1.00679 0.90562 0.91670 0.92325 0.92324 0.90539 0.90568 0.89827 0.89936 0.91460 0.91576 0.76269 0.85308 0.83598 0.92252 0.92194 0.96890 0.95221 0.92844 0.86148 0.86266 0.86649 0.91184 0.91683 0.91540 0.86109 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.08 10.24 37.16 0.38 -0.70 16 2 C 0.12 0.82 5.88 -4.04 -0.02 0.80 16 3 N -0.62 -5.21 2.61 -171.75 -0.45 -5.66 16 4 C 0.11 0.89 5.28 -4.04 -0.02 0.87 16 5 C 0.10 1.05 6.00 -4.04 -0.02 1.02 16 6 N -0.73 -8.22 5.56 -60.29 -0.33 -8.56 16 7 C 0.48 7.18 7.07 -10.99 -0.08 7.10 16 8 O -0.55 -9.94 16.25 5.55 0.09 -9.85 16 9 C 0.08 1.16 3.15 -68.86 -0.22 0.94 16 10 H 0.10 1.36 8.14 -51.93 -0.42 0.93 16 11 N -0.81 -12.62 8.44 -5.65 -0.05 -12.67 16 12 C -0.09 -1.65 4.78 -26.73 -0.13 -1.77 16 13 C 0.00 -0.10 3.93 -27.88 -0.11 -0.21 16 14 C -0.52 -14.77 9.66 -34.44 -0.33 -15.10 16 15 H 0.07 2.09 7.99 -52.49 -0.42 1.67 16 16 C 0.07 1.90 5.47 -17.82 -0.10 1.80 16 17 N -0.91 -28.03 13.96 55.43 0.77 -27.25 16 18 Si 0.88 21.93 27.47 -169.99 -4.67 17.27 16 19 H -0.28 -6.85 7.11 56.52 0.40 -6.44 16 20 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 21 H -0.26 -6.28 6.54 56.52 0.37 -5.91 16 22 C 0.22 2.10 6.55 -83.79 -0.55 1.55 16 23 C -0.20 -1.91 9.21 -39.38 -0.36 -2.28 16 24 C -0.07 -0.61 10.04 -39.61 -0.40 -1.01 16 25 C -0.18 -1.56 9.70 -39.54 -0.38 -1.94 16 26 C -0.04 -0.36 5.88 -104.65 -0.62 -0.98 16 27 C -0.11 -0.69 10.01 36.01 0.36 -0.33 16 28 C -0.20 -1.75 8.86 -39.38 -0.35 -2.10 16 29 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 31 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 32 H 0.08 0.52 8.07 -51.93 -0.42 0.11 16 33 H 0.08 0.50 6.20 -51.93 -0.32 0.18 16 34 H 0.08 0.59 8.07 -51.93 -0.42 0.17 16 35 H 0.08 0.60 6.19 -51.93 -0.32 0.27 16 36 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 37 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 38 H 0.40 3.59 8.47 -40.82 -0.35 3.24 16 39 H 0.34 4.50 9.06 -39.29 -0.36 4.15 16 40 H 0.35 5.62 8.58 -39.29 -0.34 5.28 16 41 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 42 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 43 H 0.01 0.30 7.20 -51.93 -0.37 -0.08 16 44 H 0.03 0.71 7.18 -51.93 -0.37 0.34 16 45 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 46 H 0.12 1.06 6.14 -52.49 -0.32 0.73 16 47 H 0.12 0.85 8.06 -52.49 -0.42 0.43 16 48 H 0.12 0.80 8.06 -52.48 -0.42 0.38 16 49 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 50 H 0.06 0.35 8.08 -51.93 -0.42 -0.07 16 51 H 0.07 0.35 8.09 -51.92 -0.42 -0.07 16 52 H 0.12 0.92 6.14 -52.48 -0.32 0.60 16 LS Contribution 419.89 15.07 6.33 6.33 Total: -1.00 -34.07 419.89 -10.24 -44.31 By element: Atomic # 1 Polarization: 17.40 SS G_CDS: -8.99 Total: 8.41 kcal Atomic # 6 Polarization: -9.38 SS G_CDS: -2.95 Total: -12.33 kcal Atomic # 7 Polarization: -54.08 SS G_CDS: -0.06 Total: -54.14 kcal Atomic # 8 Polarization: -9.94 SS G_CDS: 0.09 Total: -9.85 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -4.67 Total: 17.27 kcal Total LS contribution 6.33 Total: 6.33 kcal Total: -34.07 -10.24 -44.31 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424145553.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.025 kcal (2) G-P(sol) polarization free energy of solvation -34.069 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.045 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.243 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.313 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.288 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.49 seconds