Wall clock time and date at job start Tue Mar 31 2020 18:28:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46502 * 109.47242 * 2 1 4 4 C 1.46500 * 119.99878 * 270.00191 * 3 2 1 5 5 C 1.53000 * 109.47125 * 269.99706 * 4 3 2 6 6 N 1.46500 * 109.47125 * 179.97438 * 5 4 3 7 7 C 1.34776 * 120.00057 * 180.02562 * 6 5 4 8 8 O 1.21287 * 119.99963 * 0.02562 * 7 6 5 9 9 C 1.50697 * 120.00327 * 179.97438 * 7 6 5 10 10 H 1.09001 * 109.47204 * 320.00761 * 9 7 6 11 11 N 1.46894 * 109.47320 * 200.00130 * 9 7 6 12 12 C 1.53004 * 109.47078 * 79.99899 * 9 7 6 13 13 C 1.52994 * 109.47203 * 185.00265 * 12 9 7 14 14 C 1.50707 * 109.47387 * 180.02562 * 13 12 9 15 15 H 1.08001 * 119.99455 * 0.02562 * 14 13 12 16 16 C 1.37866 * 120.00299 * 180.02562 * 14 13 12 17 17 N 1.31518 * 120.00144 * 359.97438 * 16 14 13 18 18 Si 1.86802 * 120.00126 * 179.97438 * 16 14 13 19 19 H 1.48498 * 109.47068 * 359.97438 * 18 16 14 20 20 H 1.48501 * 109.47429 * 119.99938 * 18 16 14 21 21 H 1.48502 * 109.47143 * 239.99699 * 18 16 14 22 22 C 1.39666 * 120.00110 * 89.99970 * 3 2 1 23 23 C 1.38937 * 120.07615 * 180.23332 * 22 3 2 24 24 C 1.38081 * 119.92453 * 180.27825 * 23 22 3 25 25 C 1.38308 * 120.07401 * 359.48697 * 24 23 22 26 26 C 1.38269 * 120.15155 * 0.25953 * 25 24 23 27 27 C 1.50699 * 119.96415 * 180.02562 * 26 25 24 28 28 C 1.38121 * 120.07065 * 359.97438 * 26 25 24 29 29 H 1.09000 * 109.46860 * 300.00037 * 1 2 3 30 30 H 1.09004 * 109.47369 * 60.00057 * 1 2 3 31 31 H 1.08999 * 109.46993 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.46860 * 239.99962 * 2 1 3 33 33 H 1.08996 * 109.47514 * 120.00226 * 2 1 3 34 34 H 1.08999 * 109.47368 * 30.00075 * 4 3 2 35 35 H 1.09000 * 109.47489 * 150.00148 * 4 3 2 36 36 H 1.08999 * 109.47299 * 300.00411 * 5 4 3 37 37 H 1.09006 * 109.47146 * 60.00262 * 5 4 3 38 38 H 0.96998 * 120.00367 * 0.02562 * 6 5 4 39 39 H 1.00905 * 111.00156 * 176.04833 * 11 9 7 40 40 H 1.00906 * 111.00261 * 299.99959 * 11 9 7 41 41 H 1.09000 * 109.47011 * 305.00313 * 12 9 7 42 42 H 1.09000 * 109.46940 * 65.00298 * 12 9 7 43 43 H 1.09000 * 109.47176 * 299.99947 * 13 12 9 44 44 H 1.08989 * 109.47591 * 60.00173 * 13 12 9 45 45 H 0.97005 * 119.99864 * 180.02562 * 17 16 14 46 46 H 1.07998 * 120.03482 * 0.02562 * 23 22 3 47 47 H 1.08002 * 119.96548 * 179.77227 * 24 23 22 48 48 H 1.08004 * 119.92377 * 180.23461 * 25 24 23 49 49 H 1.08998 * 109.47167 * 89.99479 * 27 26 25 50 50 H 1.09002 * 109.47050 * 210.00251 * 27 26 25 51 51 H 1.09008 * 109.47029 * 329.99670 * 27 26 25 52 52 H 1.08007 * 120.03411 * 179.97438 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2625 2.0718 -1.2687 5 6 3.7075 1.8314 -1.7104 6 7 3.9514 2.5215 -2.9795 7 6 5.1640 2.4496 -3.5634 8 8 6.0531 1.8132 -3.0385 9 6 5.4148 3.1590 -4.8691 10 1 4.5423 3.0530 -5.5137 11 7 6.5864 2.5687 -5.5299 12 6 5.6739 4.6430 -4.6017 13 6 5.8049 5.3858 -5.9328 14 6 6.0607 6.8475 -5.6695 15 1 6.1240 7.2102 -4.6542 16 6 6.2139 7.7216 -6.7246 17 7 6.1373 7.2798 -7.9610 18 14 6.5302 9.5334 -6.3981 19 1 6.5707 9.7727 -4.9331 20 1 7.8299 9.9254 -7.0002 21 1 5.4411 10.3427 -7.0015 22 6 2.2511 2.0396 1.2095 23 6 2.7097 3.3512 1.2114 24 6 2.9443 3.9972 2.4090 25 6 2.7132 3.3437 3.6058 26 6 2.2519 2.0403 3.6077 27 6 2.0010 1.3325 4.9143 28 6 2.0197 1.3866 2.4133 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8899 34 1 1.5817 1.6878 -2.0284 35 1 2.0956 3.1411 -1.1385 36 1 4.3883 2.2155 -0.9508 37 1 3.8745 0.7621 -1.8408 38 1 3.2403 3.0302 -3.3995 39 1 6.7372 2.9837 -6.4373 40 1 7.4091 2.6544 -4.9519 41 1 4.8429 5.0602 -4.0330 42 1 6.5963 4.7538 -4.0315 43 1 6.6359 4.9686 -6.5015 44 1 4.8826 5.2751 -6.5030 45 1 6.2455 7.8948 -8.7033 46 1 2.8863 3.8634 0.2771 47 1 3.3042 5.0155 2.4111 48 1 2.8939 3.8527 4.5412 49 1 0.9718 1.5048 5.2290 50 1 2.1676 0.2630 4.7859 51 1 2.6823 1.7179 5.6729 52 1 1.6598 0.3683 2.4154 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424145555.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:28:53 Heat of formation + Delta-G solvation = -25.986189 kcal Electronic energy + Delta-G solvation = -28119.981234 eV Core-core repulsion = 24311.378322 eV Total energy + Delta-G solvation = -3808.602912 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.14721 -39.51707 -37.33618 -35.57730 -34.74351 -33.04107 -32.85926 -31.39295 -30.77912 -29.89531 -27.93592 -27.03186 -26.23586 -24.29338 -23.67166 -22.72932 -21.63482 -20.79198 -20.30873 -19.59911 -17.72557 -17.31087 -16.57113 -16.20269 -15.94460 -15.63254 -15.28315 -14.78740 -14.70689 -14.57359 -14.46954 -14.11115 -13.95236 -13.86454 -13.63867 -13.47861 -13.16167 -13.01449 -12.85992 -12.55184 -12.37548 -12.21720 -12.18658 -12.13832 -11.75720 -11.54252 -11.52756 -11.36575 -11.09937 -10.94917 -10.91106 -10.67569 -10.05143 -10.00977 -9.92295 -9.30387 -9.21396 -9.02543 -8.86490 -8.45773 -8.19956 -7.52825 -6.10077 -4.13124 1.27072 1.45439 2.61156 2.93135 3.25165 3.33314 3.37155 3.43857 3.70822 4.38299 4.48224 4.51363 4.63569 4.71659 4.79060 4.91566 4.96867 5.05476 5.08320 5.09644 5.18031 5.19117 5.26297 5.26770 5.29966 5.33939 5.40556 5.50402 5.54253 5.58107 5.61066 5.73038 5.75302 5.79098 5.85446 5.90501 6.13117 6.26894 6.38548 6.45656 6.51138 6.53280 6.70545 6.85941 7.00960 7.28283 7.41192 7.50408 7.59476 7.68009 7.87075 7.89826 8.29611 8.45476 8.93093 9.51970 11.00801 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.012610 B = 0.002210 C = 0.002005 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2219.839822 B =12667.383956 C =13962.459878 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.118 3.882 3 N -0.623 5.623 4 C 0.113 3.887 5 C 0.103 3.897 6 N -0.735 5.735 7 C 0.526 3.474 8 O -0.537 6.537 9 C 0.075 3.925 10 H 0.096 0.904 11 N -0.831 5.831 12 C -0.137 4.137 13 C 0.024 3.976 14 C -0.523 4.523 15 H 0.055 0.945 16 C 0.058 3.942 17 N -0.893 5.893 18 Si 0.892 3.108 19 H -0.273 1.273 20 H -0.283 1.283 21 H -0.283 1.283 22 C 0.220 3.780 23 C -0.199 4.199 24 C -0.068 4.068 25 C -0.180 4.180 26 C -0.044 4.044 27 C -0.114 4.114 28 C -0.197 4.197 29 H 0.058 0.942 30 H 0.057 0.943 31 H 0.063 0.937 32 H 0.075 0.925 33 H 0.076 0.924 34 H 0.081 0.919 35 H 0.084 0.916 36 H 0.068 0.932 37 H 0.065 0.935 38 H 0.401 0.599 39 H 0.354 0.646 40 H 0.345 0.655 41 H 0.056 0.944 42 H 0.054 0.946 43 H 0.018 0.982 44 H 0.019 0.981 45 H 0.261 0.739 46 H 0.122 0.878 47 H 0.121 0.879 48 H 0.115 0.885 49 H 0.069 0.931 50 H 0.064 0.936 51 H 0.065 0.935 52 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.260 -13.996 20.212 27.933 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.005 4.005 3 N -0.334 5.334 4 C -0.011 4.011 5 C -0.023 4.023 6 N -0.389 5.389 7 C 0.313 3.687 8 O -0.412 6.412 9 C -0.040 4.040 10 H 0.114 0.886 11 N -0.363 5.363 12 C -0.177 4.177 13 C -0.013 4.013 14 C -0.561 4.561 15 H 0.073 0.927 16 C -0.144 4.144 17 N -0.532 5.532 18 Si 0.720 3.280 19 H -0.198 1.198 20 H -0.209 1.209 21 H -0.209 1.209 22 C 0.119 3.881 23 C -0.221 4.221 24 C -0.087 4.087 25 C -0.200 4.200 26 C -0.045 4.045 27 C -0.171 4.171 28 C -0.219 4.219 29 H 0.077 0.923 30 H 0.076 0.924 31 H 0.082 0.918 32 H 0.093 0.907 33 H 0.094 0.906 34 H 0.099 0.901 35 H 0.102 0.898 36 H 0.086 0.914 37 H 0.083 0.917 38 H 0.235 0.765 39 H 0.170 0.830 40 H 0.159 0.841 41 H 0.075 0.925 42 H 0.073 0.927 43 H 0.036 0.964 44 H 0.037 0.963 45 H 0.071 0.929 46 H 0.140 0.860 47 H 0.139 0.861 48 H 0.133 0.867 49 H 0.088 0.912 50 H 0.083 0.917 51 H 0.084 0.916 52 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -13.032 -15.212 20.281 28.505 hybrid contribution 0.204 2.341 -0.176 2.357 sum -12.827 -12.871 20.105 27.100 Atomic orbital electron populations 1.22224 0.96271 1.01964 1.02578 1.21422 0.94019 0.82196 1.02873 1.46398 1.71332 1.13275 1.02379 1.21534 0.95225 0.98612 0.85707 1.21706 0.96724 0.97782 0.86045 1.45869 1.14215 1.54606 1.24200 1.20903 0.81405 0.79795 0.86598 1.90644 1.43739 1.41760 1.65105 1.21469 0.96634 0.93626 0.92261 0.88575 1.58744 1.06812 1.62824 1.07936 1.22380 1.01234 0.91910 1.02173 1.19109 0.97303 0.94665 0.90262 1.21214 1.49178 0.93007 0.92685 0.92670 1.25018 0.95263 0.98966 0.95144 1.69962 1.50075 1.35039 0.98115 0.86529 0.77898 0.85157 0.78392 1.19753 1.20940 1.20947 1.17795 0.93338 0.91390 0.85559 1.20747 1.08399 0.94101 0.98878 1.20908 0.96613 0.99271 0.91913 1.20788 1.06216 0.95111 0.97873 1.19634 0.96300 0.94069 0.94480 1.20792 1.01980 1.00017 0.94288 1.20495 1.10255 1.00594 0.90570 0.92283 0.92411 0.91788 0.90660 0.90589 0.90056 0.89802 0.91383 0.91678 0.76461 0.83039 0.84129 0.92538 0.92685 0.96388 0.96315 0.92939 0.85970 0.86145 0.86655 0.91249 0.91742 0.91556 0.86190 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.04 10.24 37.16 0.38 -0.66 16 2 C 0.12 0.82 5.88 -4.04 -0.02 0.79 16 3 N -0.62 -5.45 2.61 -171.75 -0.45 -5.90 16 4 C 0.11 0.95 5.28 -4.04 -0.02 0.93 16 5 C 0.10 1.16 6.00 -4.04 -0.02 1.13 16 6 N -0.73 -9.05 5.56 -60.29 -0.33 -9.39 16 7 C 0.53 8.65 7.08 -10.99 -0.08 8.57 16 8 O -0.54 -10.68 16.25 5.55 0.09 -10.59 16 9 C 0.08 1.26 3.21 -68.87 -0.22 1.04 16 10 H 0.10 1.50 8.14 -51.93 -0.42 1.08 16 11 N -0.83 -14.36 8.93 -5.66 -0.05 -14.41 16 12 C -0.14 -2.66 4.78 -26.73 -0.13 -2.79 16 13 C 0.02 0.57 4.74 -27.88 -0.13 0.44 16 14 C -0.52 -14.25 9.11 -34.44 -0.31 -14.56 16 15 H 0.06 1.49 7.74 -52.49 -0.41 1.08 16 16 C 0.06 1.60 5.46 -17.82 -0.10 1.51 16 17 N -0.89 -25.90 13.29 55.43 0.74 -25.16 16 18 Si 0.89 21.21 29.54 -169.99 -5.02 16.19 16 19 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 20 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 21 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 22 C 0.22 2.25 6.55 -83.79 -0.55 1.70 16 23 C -0.20 -2.13 9.21 -39.38 -0.36 -2.49 16 24 C -0.07 -0.70 10.04 -39.61 -0.40 -1.09 16 25 C -0.18 -1.73 9.70 -39.54 -0.38 -2.11 16 26 C -0.04 -0.41 5.88 -104.65 -0.62 -1.02 16 27 C -0.11 -0.75 10.01 36.01 0.36 -0.39 16 28 C -0.20 -1.87 8.86 -39.38 -0.35 -2.22 16 29 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 32 H 0.07 0.49 8.07 -51.93 -0.42 0.07 16 33 H 0.08 0.50 6.20 -51.93 -0.32 0.18 16 34 H 0.08 0.56 8.07 -51.93 -0.42 0.15 16 35 H 0.08 0.69 6.19 -51.93 -0.32 0.37 16 36 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 37 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 38 H 0.40 3.96 8.47 -40.82 -0.35 3.62 16 39 H 0.35 6.11 7.55 -39.29 -0.30 5.81 16 40 H 0.35 6.10 8.58 -39.29 -0.34 5.76 16 41 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 42 H 0.05 1.13 8.14 -51.93 -0.42 0.70 16 43 H 0.02 0.45 6.87 -51.93 -0.36 0.09 16 44 H 0.02 0.47 8.14 -51.94 -0.42 0.05 16 45 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 46 H 0.12 1.26 6.14 -52.49 -0.32 0.94 16 47 H 0.12 1.05 8.06 -52.49 -0.42 0.63 16 48 H 0.12 0.92 8.06 -52.48 -0.42 0.50 16 49 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 50 H 0.06 0.37 8.08 -51.93 -0.42 -0.05 16 51 H 0.07 0.39 8.09 -51.92 -0.42 -0.03 16 52 H 0.12 0.96 6.14 -52.48 -0.32 0.64 16 LS Contribution 421.54 15.07 6.35 6.35 Total: -1.00 -32.46 421.54 -10.55 -43.01 By element: Atomic # 1 Polarization: 20.05 SS G_CDS: -8.92 Total: 11.13 kcal Atomic # 6 Polarization: -8.27 SS G_CDS: -2.95 Total: -11.23 kcal Atomic # 7 Polarization: -54.76 SS G_CDS: -0.10 Total: -54.86 kcal Atomic # 8 Polarization: -10.68 SS G_CDS: 0.09 Total: -10.59 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Total LS contribution 6.35 Total: 6.35 kcal Total: -32.46 -10.55 -43.01 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424145555.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.019 kcal (2) G-P(sol) polarization free energy of solvation -32.459 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.440 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.546 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.005 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.986 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds