Wall clock time and date at job start Tue Mar 31 2020 18:28:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46502 * 109.47242 * 2 1 4 4 C 1.46500 * 119.99878 * 270.00191 * 3 2 1 5 5 C 1.53000 * 109.47125 * 269.99706 * 4 3 2 6 6 N 1.46500 * 109.47125 * 179.97438 * 5 4 3 7 7 C 1.34776 * 120.00057 * 180.02562 * 6 5 4 8 8 O 1.21287 * 119.99963 * 0.02562 * 7 6 5 9 9 C 1.50697 * 120.00327 * 179.97438 * 7 6 5 10 10 H 1.09001 * 109.47204 * 320.00761 * 9 7 6 11 11 N 1.46894 * 109.47320 * 200.00130 * 9 7 6 12 12 C 1.53004 * 109.47078 * 79.99899 * 9 7 6 13 13 C 1.52994 * 109.47203 * 185.00265 * 12 9 7 14 14 C 1.50707 * 109.47387 * 180.02562 * 13 12 9 15 15 H 1.08001 * 119.99455 * 0.02562 * 14 13 12 16 16 C 1.37866 * 120.00299 * 180.02562 * 14 13 12 17 17 N 1.31518 * 120.00144 * 359.97438 * 16 14 13 18 18 Si 1.86802 * 120.00126 * 179.97438 * 16 14 13 19 19 H 1.48498 * 109.47068 * 359.97438 * 18 16 14 20 20 H 1.48501 * 109.47429 * 119.99938 * 18 16 14 21 21 H 1.48502 * 109.47143 * 239.99699 * 18 16 14 22 22 C 1.39666 * 120.00110 * 89.99970 * 3 2 1 23 23 C 1.38937 * 120.07615 * 180.23332 * 22 3 2 24 24 C 1.38081 * 119.92453 * 180.27825 * 23 22 3 25 25 C 1.38308 * 120.07401 * 359.48697 * 24 23 22 26 26 C 1.38269 * 120.15155 * 0.25953 * 25 24 23 27 27 C 1.50699 * 119.96415 * 180.02562 * 26 25 24 28 28 C 1.38121 * 120.07065 * 359.97438 * 26 25 24 29 29 H 1.09000 * 109.46860 * 300.00037 * 1 2 3 30 30 H 1.09004 * 109.47369 * 60.00057 * 1 2 3 31 31 H 1.08999 * 109.46993 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.46860 * 239.99962 * 2 1 3 33 33 H 1.08996 * 109.47514 * 120.00226 * 2 1 3 34 34 H 1.08999 * 109.47368 * 30.00075 * 4 3 2 35 35 H 1.09000 * 109.47489 * 150.00148 * 4 3 2 36 36 H 1.08999 * 109.47299 * 300.00411 * 5 4 3 37 37 H 1.09006 * 109.47146 * 60.00262 * 5 4 3 38 38 H 0.96998 * 120.00367 * 0.02562 * 6 5 4 39 39 H 1.00905 * 111.00156 * 176.04833 * 11 9 7 40 40 H 1.00906 * 111.00261 * 299.99959 * 11 9 7 41 41 H 1.09000 * 109.47011 * 305.00313 * 12 9 7 42 42 H 1.09000 * 109.46940 * 65.00298 * 12 9 7 43 43 H 1.09000 * 109.47176 * 299.99947 * 13 12 9 44 44 H 1.08989 * 109.47591 * 60.00173 * 13 12 9 45 45 H 0.97005 * 119.99864 * 180.02562 * 17 16 14 46 46 H 1.07998 * 120.03482 * 0.02562 * 23 22 3 47 47 H 1.08002 * 119.96548 * 179.77227 * 24 23 22 48 48 H 1.08004 * 119.92377 * 180.23461 * 25 24 23 49 49 H 1.08998 * 109.47167 * 89.99479 * 27 26 25 50 50 H 1.09002 * 109.47050 * 210.00251 * 27 26 25 51 51 H 1.09008 * 109.47029 * 329.99670 * 27 26 25 52 52 H 1.08007 * 120.03411 * 179.97438 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2625 2.0718 -1.2687 5 6 3.7075 1.8314 -1.7104 6 7 3.9514 2.5215 -2.9795 7 6 5.1640 2.4496 -3.5634 8 8 6.0531 1.8132 -3.0385 9 6 5.4148 3.1590 -4.8691 10 1 4.5423 3.0530 -5.5137 11 7 6.5864 2.5687 -5.5299 12 6 5.6739 4.6430 -4.6017 13 6 5.8049 5.3858 -5.9328 14 6 6.0607 6.8475 -5.6695 15 1 6.1240 7.2102 -4.6542 16 6 6.2139 7.7216 -6.7246 17 7 6.1373 7.2798 -7.9610 18 14 6.5302 9.5334 -6.3981 19 1 6.5707 9.7727 -4.9331 20 1 7.8299 9.9254 -7.0002 21 1 5.4411 10.3427 -7.0015 22 6 2.2511 2.0396 1.2095 23 6 2.7097 3.3512 1.2114 24 6 2.9443 3.9972 2.4090 25 6 2.7132 3.3437 3.6058 26 6 2.2519 2.0403 3.6077 27 6 2.0010 1.3325 4.9143 28 6 2.0197 1.3866 2.4133 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8899 34 1 1.5817 1.6878 -2.0284 35 1 2.0956 3.1411 -1.1385 36 1 4.3883 2.2155 -0.9508 37 1 3.8745 0.7621 -1.8408 38 1 3.2403 3.0302 -3.3995 39 1 6.7372 2.9837 -6.4373 40 1 7.4091 2.6544 -4.9519 41 1 4.8429 5.0602 -4.0330 42 1 6.5963 4.7538 -4.0315 43 1 6.6359 4.9686 -6.5015 44 1 4.8826 5.2751 -6.5030 45 1 6.2455 7.8948 -8.7033 46 1 2.8863 3.8634 0.2771 47 1 3.3042 5.0155 2.4111 48 1 2.8939 3.8527 4.5412 49 1 0.9718 1.5048 5.2290 50 1 2.1676 0.2630 4.7859 51 1 2.6823 1.7179 5.6729 52 1 1.6598 0.3683 2.4154 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000424145555.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:28:52 Heat of formation + Delta-G solvation = -46.121214 kcal Electronic energy + Delta-G solvation = -28120.854354 eV Core-core repulsion = 24311.378322 eV Total energy + Delta-G solvation = -3809.476032 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.07507 -40.59845 -38.08482 -37.09454 -35.86001 -34.83717 -33.68314 -32.06528 -31.68821 -31.56924 -28.94214 -27.72925 -27.60009 -25.71973 -24.47287 -23.74801 -22.38452 -22.29701 -21.39494 -20.61591 -18.89522 -18.39477 -18.06914 -17.47379 -16.78773 -16.58002 -16.41649 -16.29819 -15.93520 -15.63513 -15.39844 -15.14771 -15.09735 -14.73119 -14.55830 -14.50978 -14.22185 -14.07756 -13.97398 -13.76748 -13.44649 -13.10470 -13.03919 -12.95563 -12.85296 -12.75027 -12.68455 -12.51429 -12.35277 -12.17828 -11.93518 -11.81405 -11.73810 -11.57377 -11.28651 -10.83708 -10.68254 -10.56623 -10.16899 -9.65378 -9.58175 -8.23529 -8.21745 -6.31793 0.53988 0.71866 1.38180 1.40054 1.51517 1.59572 1.79950 2.39061 2.45780 2.97384 3.11933 3.74530 3.76810 3.80688 3.89862 3.93801 4.06115 4.12810 4.16430 4.25303 4.28151 4.38066 4.43652 4.51961 4.56725 4.58589 4.62926 4.66067 4.69812 4.83206 4.86791 4.92275 4.93179 4.96397 5.04217 5.08727 5.09129 5.27508 5.35290 5.36680 5.44018 5.47078 5.66011 5.67304 5.80921 5.82150 6.01526 6.06475 6.21330 6.33990 6.46456 6.51070 6.57885 6.83867 7.21677 7.37304 8.88984 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.012610 B = 0.002210 C = 0.002005 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2219.839822 B =12667.383956 C =13962.459878 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.114 3.886 3 N -0.624 5.624 4 C 0.121 3.879 5 C 0.111 3.889 6 N -0.715 5.715 7 C 0.527 3.473 8 O -0.575 6.575 9 C 0.082 3.918 10 H 0.113 0.887 11 N -0.831 5.831 12 C -0.121 4.121 13 C 0.030 3.970 14 C -0.543 4.543 15 H 0.054 0.946 16 C 0.004 3.996 17 N -0.926 5.926 18 Si 0.958 3.042 19 H -0.266 1.266 20 H -0.280 1.280 21 H -0.277 1.277 22 C 0.209 3.791 23 C -0.220 4.220 24 C -0.082 4.082 25 C -0.192 4.192 26 C -0.051 4.051 27 C -0.112 4.112 28 C -0.205 4.205 29 H 0.049 0.951 30 H 0.055 0.945 31 H 0.078 0.922 32 H 0.082 0.918 33 H 0.079 0.921 34 H 0.103 0.897 35 H 0.087 0.913 36 H 0.045 0.955 37 H 0.058 0.942 38 H 0.416 0.584 39 H 0.353 0.647 40 H 0.343 0.657 41 H 0.068 0.932 42 H 0.041 0.959 43 H 0.002 0.998 44 H 0.005 0.995 45 H 0.264 0.736 46 H 0.120 0.880 47 H 0.128 0.872 48 H 0.129 0.871 49 H 0.079 0.921 50 H 0.072 0.928 51 H 0.073 0.927 52 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.640 -14.221 21.313 29.509 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.008 4.008 3 N -0.334 5.334 4 C -0.003 4.003 5 C -0.015 4.015 6 N -0.369 5.369 7 C 0.314 3.686 8 O -0.453 6.453 9 C -0.033 4.033 10 H 0.131 0.869 11 N -0.362 5.362 12 C -0.161 4.161 13 C -0.008 4.008 14 C -0.581 4.581 15 H 0.072 0.928 16 C -0.194 4.194 17 N -0.566 5.566 18 Si 0.783 3.217 19 H -0.191 1.191 20 H -0.206 1.206 21 H -0.202 1.202 22 C 0.108 3.892 23 C -0.242 4.242 24 C -0.100 4.100 25 C -0.212 4.212 26 C -0.052 4.052 27 C -0.169 4.169 28 C -0.227 4.227 29 H 0.068 0.932 30 H 0.074 0.926 31 H 0.097 0.903 32 H 0.100 0.900 33 H 0.097 0.903 34 H 0.122 0.878 35 H 0.105 0.895 36 H 0.064 0.936 37 H 0.077 0.923 38 H 0.253 0.747 39 H 0.168 0.832 40 H 0.156 0.844 41 H 0.086 0.914 42 H 0.060 0.940 43 H 0.020 0.980 44 H 0.023 0.977 45 H 0.072 0.928 46 H 0.137 0.863 47 H 0.146 0.854 48 H 0.147 0.853 49 H 0.098 0.902 50 H 0.091 0.909 51 H 0.091 0.909 52 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -14.462 -15.438 21.392 30.085 hybrid contribution 0.621 2.376 -0.496 2.505 sum -13.841 -13.063 20.897 28.264 Atomic orbital electron populations 1.22150 0.95402 1.02740 1.01962 1.21571 0.94649 0.81231 1.03393 1.46511 1.71075 1.13915 1.01945 1.21489 0.93510 0.99093 0.86225 1.21708 0.98227 0.96932 0.84627 1.45705 1.13307 1.53735 1.24157 1.20761 0.82104 0.79498 0.86275 1.90632 1.45200 1.43598 1.65899 1.21416 0.97084 0.91796 0.93030 0.86876 1.58764 1.06945 1.62653 1.07863 1.22135 1.01080 0.93389 0.99474 1.18975 0.95788 0.93845 0.92155 1.21639 1.48951 0.94788 0.92684 0.92806 1.25858 0.95094 1.03476 0.94970 1.70066 1.50990 1.36605 0.98937 0.85500 0.77831 0.79827 0.78499 1.19062 1.20630 1.20224 1.17972 0.93375 0.91439 0.86411 1.20856 1.09545 0.94747 0.99023 1.21124 0.96852 0.99862 0.92208 1.21040 1.06354 0.95599 0.98228 1.20007 0.95461 0.94096 0.95613 1.20830 1.02758 1.00238 0.93046 1.20724 1.10252 1.01262 0.90481 0.93223 0.92623 0.90315 0.89978 0.90266 0.87834 0.89503 0.93644 0.92319 0.74692 0.83194 0.84438 0.91358 0.93993 0.97971 0.97708 0.92752 0.86253 0.85416 0.85320 0.90235 0.90911 0.90852 0.84866 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.67 10.24 71.98 0.74 -0.93 16 2 C 0.11 1.38 5.88 86.38 0.51 1.89 16 3 N -0.62 -10.16 2.61 -697.30 -1.82 -11.98 16 4 C 0.12 1.85 5.28 86.38 0.46 2.30 16 5 C 0.11 2.38 6.00 86.38 0.52 2.90 16 6 N -0.72 -16.66 5.56 -463.05 -2.57 -19.23 16 7 C 0.53 16.91 7.08 87.66 0.62 17.53 16 8 O -0.57 -22.80 16.25 -3.05 -0.05 -22.85 16 9 C 0.08 2.69 3.21 44.17 0.14 2.83 16 10 H 0.11 3.35 8.14 -2.39 -0.02 3.33 16 11 N -0.83 -28.62 8.93 -171.81 -1.54 -30.16 16 12 C -0.12 -4.64 4.78 30.59 0.15 -4.49 16 13 C 0.03 1.43 4.74 29.85 0.14 1.57 16 14 C -0.54 -29.59 9.11 25.60 0.23 -29.36 16 15 H 0.05 2.88 7.74 -2.91 -0.02 2.86 16 16 C 0.00 0.25 5.46 84.65 0.46 0.71 16 17 N -0.93 -53.95 13.29 21.44 0.28 -53.67 16 18 Si 0.96 43.28 29.54 68.60 2.03 45.30 16 19 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 20 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 21 H -0.28 -12.12 7.11 99.48 0.71 -11.42 16 22 C 0.21 4.15 6.55 38.22 0.25 4.40 16 23 C -0.22 -4.70 9.21 22.40 0.21 -4.49 16 24 C -0.08 -1.67 10.04 22.25 0.22 -1.44 16 25 C -0.19 -3.58 9.70 22.29 0.22 -3.36 16 26 C -0.05 -0.89 5.88 -19.89 -0.12 -1.00 16 27 C -0.11 -1.27 10.01 71.24 0.71 -0.56 16 28 C -0.21 -3.69 8.86 22.40 0.20 -3.49 16 29 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 30 H 0.05 0.59 8.14 -2.38 -0.02 0.58 16 31 H 0.08 0.57 8.14 -2.39 -0.02 0.55 16 32 H 0.08 0.90 8.07 -2.39 -0.02 0.88 16 33 H 0.08 0.91 6.20 -2.39 -0.01 0.89 16 34 H 0.10 1.16 8.07 -2.39 -0.02 1.14 16 35 H 0.09 1.31 6.19 -2.39 -0.01 1.30 16 36 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 37 H 0.06 1.37 8.14 -2.38 -0.02 1.35 16 38 H 0.42 7.32 8.47 -92.71 -0.79 6.53 16 39 H 0.35 12.26 7.55 -89.69 -0.68 11.58 16 40 H 0.34 12.20 8.58 -89.69 -0.77 11.43 16 41 H 0.07 2.44 8.14 -2.39 -0.02 2.42 16 42 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16 43 H 0.00 0.10 6.87 -2.39 -0.02 0.09 16 44 H 0.00 0.23 8.14 -2.39 -0.02 0.21 16 45 H 0.26 14.48 8.31 -92.70 -0.77 13.71 16 46 H 0.12 2.49 6.14 -2.91 -0.02 2.47 16 47 H 0.13 2.25 8.06 -2.91 -0.02 2.23 16 48 H 0.13 1.93 8.06 -2.91 -0.02 1.91 16 49 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 50 H 0.07 0.70 8.08 -2.39 -0.02 0.68 16 51 H 0.07 0.73 8.09 -2.38 -0.02 0.71 16 52 H 0.13 1.93 6.14 -2.91 -0.02 1.91 16 Total: -1.00 -69.40 421.54 0.69 -68.72 By element: Atomic # 1 Polarization: 40.17 SS G_CDS: -1.30 Total: 38.86 kcal Atomic # 6 Polarization: -20.65 SS G_CDS: 5.65 Total: -15.00 kcal Atomic # 7 Polarization: -109.39 SS G_CDS: -5.64 Total: -115.03 kcal Atomic # 8 Polarization: -22.80 SS G_CDS: -0.05 Total: -22.85 kcal Atomic # 14 Polarization: 43.28 SS G_CDS: 2.03 Total: 45.30 kcal Total: -69.40 0.69 -68.72 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424145555.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.594 kcal (2) G-P(sol) polarization free energy of solvation -69.401 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.807 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.686 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.715 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.121 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds