Wall clock time and date at job start Tue Mar 31 2020 18:17:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 N 1.46897 * 109.47012 * 2 1 4 4 C 1.46901 * 111.00167 * 301.87274 * 3 2 1 5 5 C 1.53000 * 109.47104 * 292.96469 * 4 3 2 6 6 C 1.46893 * 111.00406 * 65.83226 * 3 2 1 7 7 C 1.52998 * 109.47462 * 75.64774 * 6 3 2 8 8 N 1.46505 * 109.47368 * 174.67391 * 7 6 3 9 9 C 1.46496 * 119.99840 * 94.33244 * 8 7 6 10 10 C 1.50701 * 109.47269 * 270.11963 * 9 8 7 11 11 C 1.38235 * 120.00367 * 93.36088 * 10 9 8 12 12 C 1.38237 * 120.00114 * 179.97438 * 11 10 9 13 13 C 1.38236 * 120.00072 * 359.97438 * 12 11 10 14 14 C 1.38237 * 119.99763 * 0.27914 * 13 12 11 15 15 C 1.38232 * 119.99891 * 359.50573 * 14 13 12 16 16 C 1.34775 * 120.00316 * 274.33645 * 8 7 6 17 17 O 1.21587 * 119.99686 * 359.97438 * 16 8 7 18 18 N 1.34774 * 120.00299 * 180.02562 * 16 8 7 19 19 C 1.46496 * 120.00139 * 179.97438 * 18 16 8 20 20 C 1.50703 * 109.47083 * 179.97438 * 19 18 16 21 21 H 1.07998 * 120.00049 * 0.02562 * 20 19 18 22 22 C 1.37877 * 119.99793 * 179.97438 * 20 19 18 23 23 N 1.31512 * 120.00090 * 0.02562 * 22 20 19 24 24 Si 1.86805 * 119.99771 * 180.02562 * 22 20 19 25 25 H 1.48494 * 109.46929 * 60.00035 * 24 22 20 26 26 H 1.48501 * 109.47051 * 180.02562 * 24 22 20 27 27 H 1.48506 * 109.47063 * 300.00190 * 24 22 20 28 28 H 1.09003 * 109.47175 * 185.52849 * 1 2 3 29 29 H 1.08996 * 109.47652 * 305.52631 * 1 2 3 30 30 H 1.09003 * 109.47323 * 65.52644 * 1 2 3 31 31 H 1.08997 * 109.47406 * 239.99426 * 2 1 3 32 32 H 1.09007 * 109.47279 * 119.99550 * 2 1 3 33 33 H 1.09001 * 109.46643 * 52.95417 * 4 3 2 34 34 H 1.08992 * 109.47497 * 172.95690 * 4 3 2 35 35 H 1.09004 * 109.47054 * 185.96411 * 5 4 3 36 36 H 1.09004 * 109.46554 * 305.95731 * 5 4 3 37 37 H 1.08999 * 109.47789 * 65.95927 * 5 4 3 38 38 H 1.09003 * 109.47145 * 315.64999 * 6 3 2 39 39 H 1.09006 * 109.47472 * 195.65492 * 6 3 2 40 40 H 1.09002 * 109.46986 * 54.67789 * 7 6 3 41 41 H 1.08996 * 109.47444 * 294.67534 * 7 6 3 42 42 H 1.08999 * 109.47643 * 150.11671 * 9 8 7 43 43 H 1.09001 * 109.47476 * 30.11530 * 9 8 7 44 44 H 1.08004 * 119.99917 * 359.97438 * 11 10 9 45 45 H 1.07997 * 119.99787 * 180.02562 * 12 11 10 46 46 H 1.07998 * 119.99828 * 179.97438 * 13 12 11 47 47 H 1.08000 * 119.99915 * 179.72624 * 14 13 12 48 48 H 1.08005 * 119.99910 * 180.27867 * 15 14 13 49 49 H 0.97001 * 119.99406 * 359.97438 * 18 16 8 50 50 H 1.08992 * 109.47306 * 299.99745 * 19 18 16 51 51 H 1.09001 * 109.46768 * 59.99859 * 19 18 16 52 52 H 0.97001 * 119.99906 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.5123 2.1227 -1.1646 5 6 2.1241 1.5430 -2.4416 6 6 1.6657 2.0685 1.2511 7 6 2.5842 1.5837 2.3746 8 7 2.3172 2.3554 3.5910 9 6 1.3789 1.8428 4.5925 10 6 -0.0107 2.3328 4.2761 11 6 -0.8615 1.5539 3.5142 12 6 -2.1363 2.0031 3.2245 13 6 -2.5606 3.2310 3.6971 14 6 -1.7080 4.0121 4.4546 15 6 -0.4347 3.5609 4.7480 16 6 2.9348 3.5369 3.7887 17 8 3.7139 3.9621 2.9576 18 7 2.6896 4.2466 4.9079 19 6 3.3613 5.5306 5.1229 20 6 2.9165 6.1161 6.4384 21 1 2.2050 5.5846 7.0530 22 6 3.4188 7.3297 6.8578 23 7 4.2856 7.9765 6.1097 24 14 2.8680 8.0550 8.4888 25 1 3.2190 7.1219 9.5893 26 1 3.5488 9.3567 8.7068 27 1 1.3978 8.2635 8.4665 28 1 -0.3634 -1.0229 0.0990 29 1 -0.3634 0.5971 0.8363 30 1 -0.3634 0.4257 -0.9353 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8901 33 1 0.4270 2.0314 -1.2079 34 1 1.7852 3.1742 -1.0758 35 1 1.8320 2.1553 -3.2948 36 1 3.2105 1.5371 -2.3536 37 1 1.7657 0.5238 -2.5861 38 1 0.6299 1.8452 1.5068 39 1 1.7845 3.1445 1.1235 40 1 3.6242 1.7208 2.0784 41 1 2.3972 0.5271 2.5664 42 1 1.6727 2.1968 5.5806 43 1 1.3918 0.7530 4.5783 44 1 -0.5302 0.5945 3.1453 45 1 -2.8011 1.3945 2.6296 46 1 -3.5564 3.5821 3.4704 47 1 -2.0379 4.9733 4.8201 48 1 0.2298 4.1693 5.3437 49 1 2.0683 3.9071 5.5710 50 1 4.4404 5.3779 5.1392 51 1 3.1033 6.2153 4.3151 52 1 4.6387 8.8305 6.4046 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000426430537.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:17:04 Heat of formation + Delta-G solvation = 4.473118 kcal Electronic energy + Delta-G solvation = -30068.050272 eV Core-core repulsion = 26260.768174 eV Total energy + Delta-G solvation = -3807.282098 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.11768 -38.73496 -38.37680 -35.38556 -34.26723 -32.49914 -31.78106 -31.40089 -30.84755 -30.36418 -27.82403 -26.84899 -25.54904 -24.39682 -23.02431 -22.53586 -21.78806 -21.51748 -19.81500 -19.15951 -18.00982 -16.92421 -16.36926 -16.14366 -15.90254 -15.61907 -15.37049 -14.88884 -14.67824 -14.59534 -14.27192 -13.78937 -13.68172 -13.42803 -13.18170 -13.13663 -13.07164 -12.75799 -12.54749 -12.37634 -12.22089 -12.07131 -11.93927 -11.84884 -11.55924 -11.49327 -11.29373 -11.17866 -10.98143 -10.93805 -10.89116 -10.84911 -10.43333 -10.26138 -9.37905 -9.32573 -8.88916 -8.79381 -8.70344 -8.50549 -8.20766 -7.70256 -6.13704 -4.20506 1.30653 1.43177 3.14746 3.26010 3.31367 3.32758 3.83351 3.91372 4.05301 4.33196 4.65279 4.78175 4.79767 4.85510 4.91344 5.00833 5.07295 5.09916 5.13821 5.19532 5.22276 5.23845 5.28086 5.37298 5.42872 5.50244 5.52922 5.56923 5.65213 5.66413 5.76713 5.83591 5.91948 5.96732 5.99394 6.04224 6.06886 6.14612 6.30288 6.44582 6.54507 6.60202 6.82062 7.00341 7.04103 7.06470 7.22025 7.53152 7.56587 7.60552 7.87736 8.03943 8.77030 8.92575 9.35418 9.50305 10.96405 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.012092 B = 0.003470 C = 0.002946 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2314.971075 B = 8068.163253 C = 9501.141993 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.046 3.954 3 N -0.532 5.532 4 C 0.047 3.953 5 C -0.146 4.146 6 C 0.034 3.966 7 C 0.146 3.854 8 N -0.631 5.631 9 C 0.150 3.850 10 C -0.105 4.105 11 C -0.107 4.107 12 C -0.127 4.127 13 C -0.120 4.120 14 C -0.116 4.116 15 C -0.099 4.099 16 C 0.696 3.304 17 O -0.591 6.591 18 N -0.730 5.730 19 C 0.267 3.733 20 C -0.542 4.542 21 H 0.060 0.940 22 C 0.065 3.935 23 N -0.884 5.884 24 Si 0.902 3.098 25 H -0.275 1.275 26 H -0.285 1.285 27 H -0.276 1.276 28 H 0.058 0.942 29 H 0.061 0.939 30 H 0.056 0.944 31 H 0.075 0.925 32 H 0.073 0.927 33 H 0.036 0.964 34 H 0.073 0.927 35 H 0.055 0.945 36 H 0.064 0.936 37 H 0.050 0.950 38 H 0.046 0.954 39 H 0.076 0.924 40 H 0.088 0.912 41 H 0.066 0.934 42 H 0.085 0.915 43 H 0.084 0.916 44 H 0.116 0.884 45 H 0.116 0.884 46 H 0.117 0.883 47 H 0.123 0.877 48 H 0.130 0.870 49 H 0.383 0.617 50 H 0.024 0.976 51 H 0.024 0.976 52 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.742 -17.419 -9.278 23.492 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.255 4.255 2 C -0.082 4.082 3 N -0.256 5.256 4 C -0.080 4.080 5 C -0.204 4.204 6 C -0.095 4.095 7 C 0.022 3.978 8 N -0.369 5.369 9 C 0.026 3.974 10 C -0.107 4.107 11 C -0.125 4.125 12 C -0.145 4.145 13 C -0.139 4.139 14 C -0.134 4.134 15 C -0.117 4.117 16 C 0.397 3.603 17 O -0.469 6.469 18 N -0.384 5.384 19 C 0.146 3.854 20 C -0.580 4.580 21 H 0.078 0.922 22 C -0.139 4.139 23 N -0.521 5.521 24 Si 0.729 3.271 25 H -0.201 1.201 26 H -0.211 1.211 27 H -0.201 1.201 28 H 0.077 0.923 29 H 0.080 0.920 30 H 0.075 0.925 31 H 0.093 0.907 32 H 0.092 0.908 33 H 0.054 0.946 34 H 0.092 0.908 35 H 0.074 0.926 36 H 0.083 0.917 37 H 0.069 0.931 38 H 0.064 0.936 39 H 0.095 0.905 40 H 0.106 0.894 41 H 0.085 0.915 42 H 0.103 0.897 43 H 0.103 0.897 44 H 0.134 0.866 45 H 0.134 0.866 46 H 0.135 0.865 47 H 0.141 0.859 48 H 0.148 0.852 49 H 0.218 0.782 50 H 0.042 0.958 51 H 0.042 0.958 52 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -11.454 -16.879 -9.912 22.679 hybrid contribution -1.660 0.421 1.217 2.101 sum -13.114 -16.458 -8.695 22.769 Atomic orbital electron populations 1.22467 0.98589 1.02116 1.02290 1.22205 0.92669 0.90717 1.02580 1.62124 1.59277 1.01996 1.02218 1.22118 0.97173 0.98352 0.90399 1.21771 1.02063 1.00385 0.96188 1.22656 0.97935 0.99614 0.89289 1.21084 1.00831 0.93157 0.82743 1.47192 1.46200 1.21897 1.21618 1.20392 0.85220 0.99173 0.92573 1.20361 0.96181 0.95411 0.98715 1.20926 0.93823 0.99492 0.98284 1.21045 0.96186 0.96604 1.00694 1.21135 0.99590 0.94837 0.98313 1.21201 0.94063 0.99756 0.98383 1.21326 0.96157 0.95162 0.99072 1.16092 0.81013 0.79904 0.83246 1.90886 1.39928 1.70194 1.45881 1.45957 1.48441 1.24080 1.19909 1.18962 0.92703 0.77516 0.96228 1.21158 1.27104 1.05363 1.04413 0.92178 1.24922 0.94775 0.96603 0.97558 1.69967 1.29339 1.15371 1.37462 0.86514 0.78808 0.78412 0.83394 1.20081 1.21089 1.20105 0.92297 0.92023 0.92504 0.90706 0.90836 0.94630 0.90828 0.92559 0.91657 0.93068 0.93609 0.90537 0.89368 0.91526 0.89670 0.89744 0.86571 0.86582 0.86454 0.85913 0.85210 0.78181 0.95770 0.95792 0.92420 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.61 9.20 37.15 0.34 -1.26 16 2 C 0.05 0.42 5.71 -3.83 -0.02 0.40 16 3 N -0.53 -6.25 4.63 -234.64 -1.09 -7.33 16 4 C 0.05 0.52 5.40 -3.82 -0.02 0.50 16 5 C -0.15 -1.35 9.71 37.16 0.36 -0.99 16 6 C 0.03 0.46 5.18 -3.83 -0.02 0.44 16 7 C 0.15 2.03 5.43 -4.04 -0.02 2.01 16 8 N -0.63 -9.87 2.46 -180.80 -0.45 -10.31 16 9 C 0.15 1.86 5.42 -5.20 -0.03 1.83 16 10 C -0.11 -1.31 5.46 -104.62 -0.57 -1.89 16 11 C -0.11 -1.15 8.00 -39.58 -0.32 -1.47 16 12 C -0.13 -1.32 10.05 -39.58 -0.40 -1.72 16 13 C -0.12 -1.34 10.05 -39.58 -0.40 -1.73 16 14 C -0.12 -1.48 10.05 -39.58 -0.40 -1.88 16 15 C -0.10 -1.38 9.56 -39.58 -0.38 -1.76 16 16 C 0.70 14.63 8.25 -86.92 -0.72 13.91 16 17 O -0.59 -14.95 15.99 5.29 0.08 -14.87 16 18 N -0.73 -15.71 5.13 -66.42 -0.34 -16.05 16 19 C 0.27 7.14 5.43 -5.19 -0.03 7.11 16 20 C -0.54 -14.61 9.28 -34.44 -0.32 -14.93 16 21 H 0.06 1.51 7.60 -52.49 -0.40 1.11 16 22 C 0.07 1.80 5.46 -17.82 -0.10 1.71 16 23 N -0.88 -26.08 13.29 55.43 0.74 -25.34 16 24 Si 0.90 20.77 29.54 -169.99 -5.02 15.75 16 25 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 26 H -0.29 -6.57 7.11 56.52 0.40 -6.16 16 27 H -0.28 -6.20 7.11 56.52 0.40 -5.79 16 28 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.06 0.56 5.70 -51.93 -0.30 0.26 16 30 H 0.06 0.48 6.54 -51.93 -0.34 0.14 16 31 H 0.07 0.63 6.72 -51.93 -0.35 0.28 16 32 H 0.07 0.64 6.81 -51.93 -0.35 0.28 16 33 H 0.04 0.37 6.02 -51.93 -0.31 0.06 16 34 H 0.07 0.92 7.80 -51.93 -0.41 0.51 16 35 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 36 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 37 H 0.05 0.42 6.91 -51.93 -0.36 0.06 16 38 H 0.05 0.57 4.13 -51.93 -0.21 0.36 16 39 H 0.08 1.31 7.72 -51.93 -0.40 0.91 16 40 H 0.09 1.45 7.55 -51.93 -0.39 1.06 16 41 H 0.07 0.73 6.72 -51.93 -0.35 0.38 16 42 H 0.09 1.06 6.32 -51.93 -0.33 0.74 16 43 H 0.08 0.81 7.79 -51.93 -0.40 0.40 16 44 H 0.12 1.04 7.74 -52.48 -0.41 0.64 16 45 H 0.12 0.96 8.06 -52.49 -0.42 0.53 16 46 H 0.12 1.05 8.06 -52.49 -0.42 0.63 16 47 H 0.12 1.45 8.06 -52.49 -0.42 1.02 16 48 H 0.13 2.01 6.05 -52.48 -0.32 1.70 16 49 H 0.38 7.19 4.19 -40.82 -0.17 7.01 16 50 H 0.02 0.72 8.14 -51.93 -0.42 0.30 16 51 H 0.02 0.71 8.14 -51.93 -0.42 0.29 16 52 H 0.27 7.38 8.31 -40.82 -0.34 7.05 16 LS Contribution 405.50 15.07 6.11 6.11 Total: -1.00 -32.25 405.50 -11.31 -43.55 By element: Atomic # 1 Polarization: 16.52 SS G_CDS: -8.31 Total: 8.20 kcal Atomic # 6 Polarization: 3.31 SS G_CDS: -3.03 Total: 0.28 kcal Atomic # 7 Polarization: -57.90 SS G_CDS: -1.14 Total: -59.03 kcal Atomic # 8 Polarization: -14.95 SS G_CDS: 0.08 Total: -14.87 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -5.02 Total: 15.75 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -32.25 -11.31 -43.55 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000426430537.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.028 kcal (2) G-P(sol) polarization free energy of solvation -32.245 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.782 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.309 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.554 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.473 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds