Wall clock time and date at job start Tue Mar 31 2020 18:17:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 N 1.46897 * 109.47012 * 2 1 4 4 C 1.46901 * 111.00167 * 301.87274 * 3 2 1 5 5 C 1.53000 * 109.47104 * 292.96469 * 4 3 2 6 6 C 1.46893 * 111.00406 * 65.83226 * 3 2 1 7 7 C 1.52998 * 109.47462 * 75.64774 * 6 3 2 8 8 N 1.46505 * 109.47368 * 174.67391 * 7 6 3 9 9 C 1.46496 * 119.99840 * 94.33244 * 8 7 6 10 10 C 1.50701 * 109.47269 * 270.11963 * 9 8 7 11 11 C 1.38235 * 120.00367 * 93.36088 * 10 9 8 12 12 C 1.38237 * 120.00114 * 179.97438 * 11 10 9 13 13 C 1.38236 * 120.00072 * 359.97438 * 12 11 10 14 14 C 1.38237 * 119.99763 * 0.27914 * 13 12 11 15 15 C 1.38232 * 119.99891 * 359.50573 * 14 13 12 16 16 C 1.34775 * 120.00316 * 274.33645 * 8 7 6 17 17 O 1.21587 * 119.99686 * 359.97438 * 16 8 7 18 18 N 1.34774 * 120.00299 * 180.02562 * 16 8 7 19 19 C 1.46496 * 120.00139 * 179.97438 * 18 16 8 20 20 C 1.50703 * 109.47083 * 179.97438 * 19 18 16 21 21 H 1.07998 * 120.00049 * 0.02562 * 20 19 18 22 22 C 1.37877 * 119.99793 * 179.97438 * 20 19 18 23 23 N 1.31512 * 120.00090 * 0.02562 * 22 20 19 24 24 Si 1.86805 * 119.99771 * 180.02562 * 22 20 19 25 25 H 1.48494 * 109.46929 * 60.00035 * 24 22 20 26 26 H 1.48501 * 109.47051 * 180.02562 * 24 22 20 27 27 H 1.48506 * 109.47063 * 300.00190 * 24 22 20 28 28 H 1.09003 * 109.47175 * 185.52849 * 1 2 3 29 29 H 1.08996 * 109.47652 * 305.52631 * 1 2 3 30 30 H 1.09003 * 109.47323 * 65.52644 * 1 2 3 31 31 H 1.08997 * 109.47406 * 239.99426 * 2 1 3 32 32 H 1.09007 * 109.47279 * 119.99550 * 2 1 3 33 33 H 1.09001 * 109.46643 * 52.95417 * 4 3 2 34 34 H 1.08992 * 109.47497 * 172.95690 * 4 3 2 35 35 H 1.09004 * 109.47054 * 185.96411 * 5 4 3 36 36 H 1.09004 * 109.46554 * 305.95731 * 5 4 3 37 37 H 1.08999 * 109.47789 * 65.95927 * 5 4 3 38 38 H 1.09003 * 109.47145 * 315.64999 * 6 3 2 39 39 H 1.09006 * 109.47472 * 195.65492 * 6 3 2 40 40 H 1.09002 * 109.46986 * 54.67789 * 7 6 3 41 41 H 1.08996 * 109.47444 * 294.67534 * 7 6 3 42 42 H 1.08999 * 109.47643 * 150.11671 * 9 8 7 43 43 H 1.09001 * 109.47476 * 30.11530 * 9 8 7 44 44 H 1.08004 * 119.99917 * 359.97438 * 11 10 9 45 45 H 1.07997 * 119.99787 * 180.02562 * 12 11 10 46 46 H 1.07998 * 119.99828 * 179.97438 * 13 12 11 47 47 H 1.08000 * 119.99915 * 179.72624 * 14 13 12 48 48 H 1.08005 * 119.99910 * 180.27867 * 15 14 13 49 49 H 0.97001 * 119.99406 * 359.97438 * 18 16 8 50 50 H 1.08992 * 109.47306 * 299.99745 * 19 18 16 51 51 H 1.09001 * 109.46768 * 59.99859 * 19 18 16 52 52 H 0.97001 * 119.99906 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.5123 2.1227 -1.1646 5 6 2.1241 1.5430 -2.4416 6 6 1.6657 2.0685 1.2511 7 6 2.5842 1.5837 2.3746 8 7 2.3172 2.3554 3.5910 9 6 1.3789 1.8428 4.5925 10 6 -0.0107 2.3328 4.2761 11 6 -0.8615 1.5539 3.5142 12 6 -2.1363 2.0031 3.2245 13 6 -2.5606 3.2310 3.6971 14 6 -1.7080 4.0121 4.4546 15 6 -0.4347 3.5609 4.7480 16 6 2.9348 3.5369 3.7887 17 8 3.7139 3.9621 2.9576 18 7 2.6896 4.2466 4.9079 19 6 3.3613 5.5306 5.1229 20 6 2.9165 6.1161 6.4384 21 1 2.2050 5.5846 7.0530 22 6 3.4188 7.3297 6.8578 23 7 4.2856 7.9765 6.1097 24 14 2.8680 8.0550 8.4888 25 1 3.2190 7.1219 9.5893 26 1 3.5488 9.3567 8.7068 27 1 1.3978 8.2635 8.4665 28 1 -0.3634 -1.0229 0.0990 29 1 -0.3634 0.5971 0.8363 30 1 -0.3634 0.4257 -0.9353 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8901 33 1 0.4270 2.0314 -1.2079 34 1 1.7852 3.1742 -1.0758 35 1 1.8320 2.1553 -3.2948 36 1 3.2105 1.5371 -2.3536 37 1 1.7657 0.5238 -2.5861 38 1 0.6299 1.8452 1.5068 39 1 1.7845 3.1445 1.1235 40 1 3.6242 1.7208 2.0784 41 1 2.3972 0.5271 2.5664 42 1 1.6727 2.1968 5.5806 43 1 1.3918 0.7530 4.5783 44 1 -0.5302 0.5945 3.1453 45 1 -2.8011 1.3945 2.6296 46 1 -3.5564 3.5821 3.4704 47 1 -2.0379 4.9733 4.8201 48 1 0.2298 4.1693 5.3437 49 1 2.0683 3.9071 5.5710 50 1 4.4404 5.3779 5.1392 51 1 3.1033 6.2153 4.3151 52 1 4.6387 8.8305 6.4046 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000426430537.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:17:03 Heat of formation + Delta-G solvation = -15.489672 kcal Electronic energy + Delta-G solvation = -30068.915924 eV Core-core repulsion = 26260.768174 eV Total energy + Delta-G solvation = -3808.147749 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.48256 -39.85838 -39.37147 -36.77929 -36.20083 -34.40818 -32.92223 -32.23548 -31.75250 -31.37173 -29.43124 -28.17896 -26.78828 -25.28462 -24.66173 -23.48083 -23.22026 -22.52674 -20.87782 -20.62135 -19.51563 -18.09133 -17.90914 -17.45582 -16.99733 -16.88563 -16.58201 -16.34126 -15.96065 -15.83839 -15.31071 -15.11883 -14.93859 -14.73876 -14.29333 -14.26629 -14.00244 -13.91224 -13.85541 -13.74918 -13.44573 -13.21246 -13.08154 -12.94080 -12.88861 -12.70931 -12.57126 -12.33722 -12.25655 -12.14104 -12.07093 -11.85760 -11.80692 -11.49997 -11.30942 -11.12646 -10.79220 -10.08615 -9.79799 -9.71982 -9.48797 -9.11739 -8.28250 -6.45059 0.37455 0.51877 1.41763 1.46298 1.54220 1.79391 2.23621 2.37660 2.88290 2.99635 3.06436 3.33503 3.82158 3.85744 3.93951 4.03559 4.16403 4.17872 4.23614 4.29245 4.31441 4.38307 4.45516 4.48433 4.57718 4.61266 4.67295 4.70542 4.74015 4.79326 4.83235 4.97874 5.04348 5.09072 5.11563 5.14226 5.16263 5.17050 5.27076 5.29889 5.46060 5.48366 5.52634 5.57925 5.63675 5.66660 5.77807 5.85043 6.06689 6.12664 6.13737 6.26545 6.65796 7.17448 7.25293 7.71445 8.83918 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.012092 B = 0.003470 C = 0.002946 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2314.971075 B = 8068.163253 C = 9501.141993 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.044 3.956 3 N -0.546 5.546 4 C 0.047 3.953 5 C -0.139 4.139 6 C 0.049 3.951 7 C 0.146 3.854 8 N -0.616 5.616 9 C 0.145 3.855 10 C -0.114 4.114 11 C -0.101 4.101 12 C -0.124 4.124 13 C -0.121 4.121 14 C -0.135 4.135 15 C -0.125 4.125 16 C 0.692 3.308 17 O -0.642 6.642 18 N -0.722 5.722 19 C 0.289 3.711 20 C -0.553 4.553 21 H 0.081 0.919 22 C 0.007 3.993 23 N -0.930 5.930 24 Si 0.983 3.017 25 H -0.261 1.261 26 H -0.285 1.285 27 H -0.262 1.262 28 H 0.078 0.922 29 H 0.054 0.946 30 H 0.052 0.948 31 H 0.084 0.916 32 H 0.084 0.916 33 H 0.045 0.955 34 H 0.046 0.954 35 H 0.066 0.934 36 H 0.052 0.948 37 H 0.067 0.933 38 H 0.062 0.938 39 H 0.027 0.973 40 H 0.057 0.943 41 H 0.113 0.887 42 H 0.080 0.920 43 H 0.128 0.872 44 H 0.145 0.855 45 H 0.147 0.853 46 H 0.140 0.860 47 H 0.121 0.879 48 H 0.104 0.896 49 H 0.399 0.601 50 H -0.016 1.016 51 H -0.019 1.019 52 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.651 -20.677 -8.778 27.378 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.248 4.248 2 C -0.083 4.083 3 N -0.271 5.271 4 C -0.081 4.081 5 C -0.197 4.197 6 C -0.080 4.080 7 C 0.022 3.978 8 N -0.352 5.352 9 C 0.023 3.977 10 C -0.116 4.116 11 C -0.119 4.119 12 C -0.142 4.142 13 C -0.139 4.139 14 C -0.153 4.153 15 C -0.144 4.144 16 C 0.394 3.606 17 O -0.525 6.525 18 N -0.378 5.378 19 C 0.165 3.835 20 C -0.591 4.591 21 H 0.099 0.901 22 C -0.193 4.193 23 N -0.568 5.568 24 Si 0.806 3.194 25 H -0.186 1.186 26 H -0.210 1.210 27 H -0.187 1.187 28 H 0.097 0.903 29 H 0.073 0.927 30 H 0.071 0.929 31 H 0.103 0.897 32 H 0.102 0.898 33 H 0.063 0.937 34 H 0.064 0.936 35 H 0.085 0.915 36 H 0.071 0.929 37 H 0.086 0.914 38 H 0.080 0.920 39 H 0.046 0.954 40 H 0.075 0.925 41 H 0.131 0.869 42 H 0.099 0.901 43 H 0.146 0.854 44 H 0.163 0.837 45 H 0.165 0.835 46 H 0.157 0.843 47 H 0.140 0.860 48 H 0.122 0.878 49 H 0.237 0.763 50 H 0.002 0.998 51 H -0.001 1.001 52 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -14.421 -20.219 -9.405 26.557 hybrid contribution -0.796 1.362 0.951 1.842 sum -15.217 -18.857 -8.454 25.664 Atomic orbital electron populations 1.22403 0.97411 1.03209 1.01814 1.22328 0.93654 0.88690 1.03634 1.62106 1.60150 1.03384 1.01410 1.22118 0.97861 0.97057 0.91094 1.21715 1.01108 1.01399 0.95441 1.22379 0.98538 0.96857 0.90203 1.21254 0.99311 0.95056 0.82130 1.47140 1.45573 1.19711 1.22825 1.20710 0.84309 1.01518 0.91150 1.20337 0.96402 0.95219 0.99597 1.21225 0.93597 1.00128 0.96976 1.21442 0.96422 0.96330 0.99978 1.21440 1.00227 0.94973 0.97300 1.21335 0.94175 1.00371 0.99452 1.21287 0.96651 0.96129 1.00370 1.16307 0.80858 0.81216 0.82256 1.90844 1.42333 1.71937 1.47350 1.45547 1.48553 1.22740 1.20944 1.18356 0.90730 0.79046 0.95350 1.21502 1.27417 1.05863 1.04329 0.90147 1.26033 0.94469 0.96951 1.01871 1.70141 1.30818 1.15937 1.39905 0.85242 0.78797 0.77399 0.78003 1.18553 1.21022 1.18666 0.90260 0.92672 0.92853 0.89741 0.89791 0.93662 0.93581 0.91533 0.92884 0.91414 0.92039 0.95426 0.92450 0.86942 0.90146 0.85371 0.83715 0.83498 0.84252 0.86049 0.87813 0.76314 0.99800 1.00105 0.92243 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.34 9.20 71.98 0.66 -1.68 16 2 C 0.04 0.67 5.71 86.30 0.49 1.16 16 3 N -0.55 -12.33 4.63 -896.26 -4.15 -16.49 16 4 C 0.05 1.01 5.40 86.30 0.47 1.48 16 5 C -0.14 -2.40 9.71 71.98 0.70 -1.70 16 6 C 0.05 1.32 5.18 86.30 0.45 1.77 16 7 C 0.15 3.94 5.43 86.38 0.47 4.41 16 8 N -0.62 -19.27 2.46 -844.20 -2.08 -21.35 16 9 C 0.15 3.32 5.42 85.63 0.46 3.78 16 10 C -0.11 -2.67 5.46 -19.87 -0.11 -2.78 16 11 C -0.10 -1.80 8.00 22.27 0.18 -1.62 16 12 C -0.12 -2.10 10.05 22.27 0.22 -1.88 16 13 C -0.12 -2.41 10.05 22.27 0.22 -2.19 16 14 C -0.14 -3.43 10.05 22.27 0.22 -3.20 16 15 C -0.13 -3.55 9.56 22.27 0.21 -3.34 16 16 C 0.69 30.78 8.25 179.06 1.48 32.26 16 17 O -0.64 -35.14 15.99 -3.99 -0.06 -35.20 16 18 N -0.72 -32.96 5.13 -482.31 -2.47 -35.44 16 19 C 0.29 16.58 5.43 85.63 0.46 17.04 16 20 C -0.55 -30.82 9.28 25.60 0.24 -30.58 16 21 H 0.08 4.05 7.60 -2.91 -0.02 4.03 16 22 C 0.01 0.37 5.46 84.65 0.46 0.83 16 23 N -0.93 -57.14 13.29 21.45 0.28 -56.86 16 24 Si 0.98 42.89 29.54 68.60 2.03 44.92 16 25 H -0.26 -10.75 7.11 99.48 0.71 -10.05 16 26 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 27 H -0.26 -10.82 7.11 99.48 0.71 -10.11 16 28 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 29 H 0.05 0.76 5.70 -2.39 -0.01 0.74 16 30 H 0.05 0.71 6.54 -2.39 -0.02 0.69 16 31 H 0.08 1.14 6.72 -2.39 -0.02 1.13 16 32 H 0.08 1.10 6.81 -2.38 -0.02 1.08 16 33 H 0.05 0.89 6.02 -2.39 -0.01 0.87 16 34 H 0.05 1.23 7.80 -2.39 -0.02 1.21 16 35 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 36 H 0.05 1.05 8.14 -2.38 -0.02 1.03 16 37 H 0.07 0.95 6.91 -2.39 -0.02 0.93 16 38 H 0.06 1.42 4.13 -2.39 -0.01 1.41 16 39 H 0.03 1.00 7.72 -2.38 -0.02 0.98 16 40 H 0.06 1.94 7.55 -2.39 -0.02 1.92 16 41 H 0.11 2.03 6.72 -2.39 -0.02 2.01 16 42 H 0.08 1.93 6.32 -2.39 -0.02 1.92 16 43 H 0.13 1.86 7.79 -2.39 -0.02 1.84 16 44 H 0.15 1.76 7.74 -2.91 -0.02 1.74 16 45 H 0.15 1.62 8.06 -2.91 -0.02 1.60 16 46 H 0.14 2.10 8.06 -2.91 -0.02 2.07 16 47 H 0.12 2.95 8.06 -2.91 -0.02 2.92 16 48 H 0.10 3.40 6.05 -2.91 -0.02 3.38 16 49 H 0.40 15.58 4.19 -92.71 -0.39 15.19 16 50 H -0.02 -1.03 8.14 -2.39 -0.02 -1.05 16 51 H -0.02 -1.24 8.14 -2.39 -0.02 -1.26 16 52 H 0.27 15.43 8.31 -92.71 -0.77 14.66 16 Total: -1.00 -77.09 405.50 1.36 -75.72 By element: Atomic # 1 Polarization: 30.42 SS G_CDS: 0.53 Total: 30.94 kcal Atomic # 6 Polarization: 6.46 SS G_CDS: 7.30 Total: 13.75 kcal Atomic # 7 Polarization: -121.71 SS G_CDS: -8.42 Total: -130.13 kcal Atomic # 8 Polarization: -35.14 SS G_CDS: -0.06 Total: -35.20 kcal Atomic # 14 Polarization: 42.89 SS G_CDS: 2.03 Total: 44.92 kcal Total: -77.09 1.36 -75.72 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000426430537.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.231 kcal (2) G-P(sol) polarization free energy of solvation -77.085 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.854 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.364 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.721 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.490 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds