Wall clock time and date at job start Tue Mar 31 2020 18:25:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46505 * 109.47150 * 2 1 4 4 C 1.46499 * 119.99842 * 270.00562 * 3 2 1 5 5 C 1.50701 * 109.46819 * 269.99663 * 4 3 2 6 6 H 1.07996 * 120.00135 * 359.97438 * 5 4 3 7 7 C 1.37878 * 119.99803 * 180.02562 * 5 4 3 8 8 N 1.31518 * 119.99781 * 179.97438 * 7 5 4 9 9 Si 1.86797 * 120.00316 * 359.97438 * 7 5 4 10 10 H 1.48500 * 109.47440 * 89.99848 * 9 7 5 11 11 H 1.48499 * 109.47358 * 210.00377 * 9 7 5 12 12 H 1.48506 * 109.46748 * 329.99852 * 9 7 5 13 13 C 1.34777 * 119.99688 * 89.99823 * 3 2 1 14 14 O 1.21283 * 119.99523 * 180.02562 * 13 3 2 15 15 C 1.50700 * 120.00251 * 0.02562 * 13 3 2 16 16 N 1.46898 * 109.47002 * 179.97438 * 15 13 3 17 17 C 1.46897 * 110.99698 * 179.97438 * 16 15 13 18 18 H 1.08993 * 109.47569 * 35.00000 * 17 16 15 19 19 C 1.53001 * 109.47249 * 275.00072 * 17 16 15 20 20 C 1.53005 * 109.47020 * 155.00311 * 17 16 15 21 21 C 1.53002 * 109.46752 * 294.99848 * 20 17 16 22 22 C 1.52995 * 109.46875 * 179.97438 * 21 20 17 23 23 C 1.50706 * 109.47285 * 179.97438 * 22 21 20 24 24 C 1.38675 * 120.41529 * 89.99913 * 23 22 21 25 25 C 1.38631 * 118.41792 * 179.97438 * 24 23 22 26 26 C 1.38221 * 119.16077 * 0.25627 * 25 24 23 27 27 N 1.31860 * 120.76509 * 359.49797 * 26 25 24 28 28 C 1.31882 * 121.72556 * 0.49011 * 27 26 25 29 29 H 1.08997 * 109.47525 * 299.99457 * 1 2 3 30 30 H 1.09004 * 109.47618 * 60.00155 * 1 2 3 31 31 H 1.09004 * 109.46880 * 179.97438 * 1 2 3 32 32 H 1.09005 * 109.47222 * 240.00529 * 2 1 3 33 33 H 1.08999 * 109.47564 * 120.00316 * 2 1 3 34 34 H 1.08999 * 109.47545 * 29.99856 * 4 3 2 35 35 H 1.09003 * 109.46883 * 149.99948 * 4 3 2 36 36 H 0.97002 * 119.99423 * 179.97438 * 8 7 5 37 37 H 1.09001 * 109.46956 * 59.99302 * 15 13 3 38 38 H 1.08998 * 109.46703 * 299.99750 * 15 13 3 39 39 H 1.00893 * 111.00402 * 303.95532 * 16 15 13 40 40 H 1.09005 * 109.46981 * 300.00112 * 19 17 16 41 41 H 1.08999 * 109.47411 * 59.99785 * 19 17 16 42 42 H 1.09004 * 109.47336 * 180.02562 * 19 17 16 43 43 H 1.09003 * 109.47054 * 174.99994 * 20 17 16 44 44 H 1.09001 * 109.46893 * 54.99738 * 20 17 16 45 45 H 1.08995 * 109.47078 * 60.00013 * 21 20 17 46 46 H 1.09001 * 109.47331 * 299.99621 * 21 20 17 47 47 H 1.09008 * 109.47427 * 59.99953 * 22 21 20 48 48 H 1.08998 * 109.47562 * 299.99860 * 22 21 20 49 49 H 1.07998 * 120.79161 * 359.96013 * 24 23 22 50 50 H 1.08002 * 120.41548 * 179.97438 * 25 24 23 51 51 H 1.08002 * 119.62066 * 179.74470 * 26 25 24 52 52 H 1.07993 * 119.62126 * 179.75488 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2623 2.0719 -1.2687 5 6 3.6856 1.8351 -1.7038 6 1 4.3427 1.2310 -1.0959 7 6 4.1491 2.3906 -2.8775 8 7 5.3914 2.1843 -3.2570 9 14 3.0128 3.4360 -3.9288 10 1 3.1153 4.8562 -3.5070 11 1 3.4064 3.3137 -5.3554 12 1 1.6132 2.9692 -3.7596 13 6 2.2429 2.0166 1.1672 14 8 2.6467 3.1602 1.1672 15 6 1.9922 1.3060 2.4723 16 7 2.3109 2.2058 3.5889 17 6 2.0773 1.5456 4.8801 18 1 2.3283 0.4881 4.7982 19 6 0.6047 1.6916 5.2687 20 6 2.9544 2.1963 5.9517 21 6 4.4281 1.9423 5.6278 22 6 5.3052 2.5936 6.6989 23 6 6.7567 2.3429 6.3803 24 6 7.4664 3.2352 5.5909 25 6 8.7996 2.9643 5.3244 26 6 9.3716 1.8192 5.8462 27 7 8.6672 0.9953 6.5970 28 6 7.3972 1.2214 6.8715 29 1 -0.3634 0.5137 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8933 -0.5138 -0.8901 33 1 1.8933 -0.5139 0.8899 34 1 1.5815 1.6878 -2.0284 35 1 2.0954 3.1411 -1.1383 36 1 5.7173 2.5749 -4.0829 37 1 2.6227 0.4187 2.5298 38 1 0.9444 1.0115 2.5302 39 1 3.2590 2.5440 3.5215 40 1 0.3537 2.7492 5.3507 41 1 -0.0202 1.2281 4.5054 42 1 0.4315 1.2020 6.2271 43 1 2.7172 1.7673 6.9252 44 1 2.7667 3.2699 5.9721 45 1 4.6653 2.3713 4.6543 46 1 4.6158 0.8688 5.6074 47 1 5.0681 2.1650 7.6728 48 1 5.1174 3.6671 6.7190 49 1 6.9918 4.1200 5.1930 50 1 9.3827 3.6371 4.7130 51 1 10.4085 1.5988 5.6398 52 1 6.8514 0.5217 7.4871 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000459646243.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:25:38 Heat of formation + Delta-G solvation = -15.039139 kcal Electronic energy + Delta-G solvation = -28501.598883 eV Core-core repulsion = 24693.470670 eV Total energy + Delta-G solvation = -3808.128212 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.35929 -39.30996 -37.65873 -35.39408 -34.90065 -32.79644 -32.38966 -31.75149 -30.36969 -30.08622 -28.09421 -26.81830 -25.50047 -23.73760 -23.08597 -22.97093 -21.93624 -21.32283 -20.42310 -18.38687 -17.27512 -16.92285 -16.69326 -16.59719 -16.03297 -15.81575 -15.37345 -15.12300 -14.50392 -14.36869 -14.17887 -13.92142 -13.62295 -13.49958 -13.46374 -13.22321 -13.17799 -12.82683 -12.51205 -12.33637 -12.26874 -12.20255 -12.00098 -11.85087 -11.77021 -11.53778 -11.37079 -11.12480 -10.97386 -10.91898 -10.71546 -10.66018 -10.48898 -10.14940 -9.93180 -9.61016 -9.53927 -9.11184 -8.98069 -8.58719 -8.31705 -7.69775 -6.08825 -4.07342 0.92163 1.11304 3.29286 3.35236 3.37290 3.38596 3.61914 3.67733 4.23020 4.32761 4.39910 4.44195 4.56693 4.65210 4.78217 4.81580 4.90461 4.95137 5.06277 5.14558 5.22381 5.25460 5.28859 5.32464 5.38975 5.42828 5.50229 5.53379 5.57501 5.60202 5.63129 5.70453 5.71194 5.75816 5.87106 5.93221 5.96797 5.99013 6.10026 6.14829 6.15466 6.22283 6.39838 6.52585 6.70030 6.93623 7.06208 7.38202 7.46767 7.61989 7.78777 8.28822 8.47510 8.93247 9.02942 9.51898 11.04586 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.008801 B = 0.002972 C = 0.002385 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3180.786770 B = 9418.009999 C =11736.641395 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.106 3.894 3 N -0.595 5.595 4 C 0.217 3.783 5 C -0.528 4.528 6 H 0.073 0.927 7 C 0.072 3.928 8 N -0.898 5.898 9 Si 0.876 3.124 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.266 1.266 13 C 0.507 3.493 14 O -0.529 6.529 15 C 0.042 3.958 16 N -0.670 5.670 17 C 0.083 3.917 18 H 0.042 0.958 19 C -0.140 4.140 20 C -0.120 4.120 21 C -0.121 4.121 22 C -0.073 4.073 23 C -0.133 4.133 24 C -0.072 4.072 25 C -0.167 4.167 26 C 0.090 3.910 27 N -0.486 5.486 28 C 0.097 3.903 29 H 0.052 0.948 30 H 0.059 0.941 31 H 0.061 0.939 32 H 0.084 0.916 33 H 0.066 0.934 34 H 0.029 0.971 35 H 0.036 0.964 36 H 0.264 0.736 37 H 0.053 0.947 38 H 0.094 0.906 39 H 0.352 0.648 40 H 0.062 0.938 41 H 0.052 0.948 42 H 0.053 0.947 43 H 0.070 0.930 44 H 0.075 0.925 45 H 0.068 0.932 46 H 0.063 0.937 47 H 0.075 0.925 48 H 0.076 0.924 49 H 0.136 0.864 50 H 0.136 0.864 51 H 0.154 0.846 52 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.863 -3.367 21.170 21.781 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.018 4.018 3 N -0.327 5.327 4 C 0.097 3.903 5 C -0.566 4.566 6 H 0.091 0.909 7 C -0.130 4.130 8 N -0.537 5.537 9 Si 0.703 3.297 10 H -0.199 1.199 11 H -0.211 1.211 12 H -0.191 1.191 13 C 0.293 3.707 14 O -0.405 6.405 15 C -0.090 4.090 16 N -0.305 5.305 17 C -0.027 4.027 18 H 0.060 0.940 19 C -0.198 4.198 20 C -0.158 4.158 21 C -0.159 4.159 22 C -0.111 4.111 23 C -0.135 4.135 24 C -0.098 4.098 25 C -0.187 4.187 26 C -0.067 4.067 27 N -0.194 5.194 28 C -0.060 4.060 29 H 0.071 0.929 30 H 0.078 0.922 31 H 0.080 0.920 32 H 0.102 0.898 33 H 0.084 0.916 34 H 0.047 0.953 35 H 0.054 0.946 36 H 0.074 0.926 37 H 0.070 0.930 38 H 0.112 0.888 39 H 0.173 0.827 40 H 0.081 0.919 41 H 0.071 0.929 42 H 0.072 0.928 43 H 0.089 0.911 44 H 0.093 0.907 45 H 0.086 0.914 46 H 0.082 0.918 47 H 0.094 0.906 48 H 0.095 0.905 49 H 0.154 0.846 50 H 0.154 0.846 51 H 0.172 0.828 52 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -3.702 -3.147 21.329 21.875 hybrid contribution -0.046 0.563 -1.187 1.315 sum -3.749 -2.584 20.141 20.650 Atomic orbital electron populations 1.22234 0.96764 1.01521 1.02286 1.21431 0.93416 0.83949 1.02981 1.47936 1.64476 1.13322 1.07013 1.19624 0.97195 0.93404 0.80124 1.21331 0.95367 1.32818 1.07100 0.90901 1.24858 0.94996 0.95808 0.97360 1.69903 1.15143 1.45062 1.23576 0.86844 0.81484 0.81621 0.79709 1.19900 1.21099 1.19068 1.20237 0.78525 0.87052 0.84900 1.90666 1.45001 1.17827 1.86963 1.21922 1.02295 0.94400 0.90422 1.60231 1.32796 1.37559 0.99903 1.21548 0.95914 0.96068 0.89181 0.93982 1.21796 0.95221 1.02521 1.00222 1.21779 0.93532 1.02149 0.98311 1.21677 0.94306 1.00953 0.98977 1.20534 0.89379 1.01929 0.99299 1.20950 0.97424 0.96216 0.98865 1.21593 0.94026 0.99003 0.95172 1.22206 0.96103 0.99177 1.01229 1.22763 1.00047 0.90586 0.93301 1.67670 1.07734 1.30640 1.13345 1.22645 0.90638 0.95199 0.97524 0.92934 0.92203 0.92030 0.89774 0.91603 0.95338 0.94615 0.92595 0.92958 0.88796 0.82655 0.91889 0.92856 0.92787 0.91139 0.90665 0.91366 0.91810 0.90645 0.90503 0.84637 0.84631 0.82844 0.83072 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.13 10.24 37.15 0.38 -1.75 16 2 C 0.11 1.65 5.93 -4.04 -0.02 1.62 16 3 N -0.59 -12.19 2.46 -175.06 -0.43 -12.62 16 4 C 0.22 5.34 4.23 -5.19 -0.02 5.32 16 5 C -0.53 -15.22 9.94 -34.44 -0.34 -15.56 16 6 H 0.07 2.30 8.06 -52.49 -0.42 1.88 16 7 C 0.07 2.11 5.47 -17.82 -0.10 2.01 16 8 N -0.90 -27.78 13.96 55.43 0.77 -27.01 16 9 Si 0.88 21.72 27.47 -169.99 -4.67 17.05 16 10 H -0.27 -6.83 7.11 56.52 0.40 -6.42 16 11 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 12 H -0.27 -6.21 6.54 56.52 0.37 -5.84 16 13 C 0.51 10.32 7.71 -10.99 -0.08 10.23 16 14 O -0.53 -13.06 15.78 5.55 0.09 -12.97 16 15 C 0.04 0.62 4.52 -4.98 -0.02 0.60 16 16 N -0.67 -9.31 5.93 -108.00 -0.64 -9.95 16 17 C 0.08 0.85 2.65 -67.71 -0.18 0.67 16 18 H 0.04 0.42 7.80 -51.93 -0.41 0.02 16 19 C -0.14 -1.31 9.41 37.16 0.35 -0.96 16 20 C -0.12 -1.01 4.81 -26.73 -0.13 -1.14 16 21 C -0.12 -1.08 5.03 -26.73 -0.13 -1.22 16 22 C -0.07 -0.57 5.37 -27.88 -0.15 -0.72 16 23 C -0.13 -1.29 5.15 -104.48 -0.54 -1.83 16 24 C -0.07 -0.73 9.86 -39.28 -0.39 -1.11 16 25 C -0.17 -1.66 10.11 -39.44 -0.40 -2.06 16 26 C 0.09 0.94 11.18 -17.55 -0.20 0.75 16 27 N -0.49 -5.82 10.36 -13.25 -0.14 -5.95 16 28 C 0.10 1.01 10.86 -17.55 -0.19 0.82 16 29 H 0.05 0.63 7.22 -51.93 -0.38 0.25 16 30 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 31 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 32 H 0.08 1.37 8.07 -51.93 -0.42 0.95 16 33 H 0.07 0.86 6.44 -51.93 -0.33 0.53 16 34 H 0.03 0.67 7.13 -51.93 -0.37 0.30 16 35 H 0.04 0.95 6.85 -51.93 -0.36 0.59 16 36 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 37 H 0.05 0.71 7.32 -51.93 -0.38 0.33 16 38 H 0.09 1.21 6.48 -51.93 -0.34 0.87 16 39 H 0.35 5.28 6.17 -39.30 -0.24 5.04 16 40 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 41 H 0.05 0.52 7.45 -51.93 -0.39 0.13 16 42 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 43 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 44 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 45 H 0.07 0.75 6.43 -51.93 -0.33 0.42 16 46 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 47 H 0.07 0.48 8.09 -51.92 -0.42 0.06 16 48 H 0.08 0.57 8.10 -51.93 -0.42 0.15 16 49 H 0.14 1.20 8.06 -52.49 -0.42 0.78 16 50 H 0.14 1.06 8.06 -52.49 -0.42 0.64 16 51 H 0.15 1.23 8.06 -52.49 -0.42 0.81 16 52 H 0.15 1.23 8.06 -52.49 -0.42 0.80 16 LS Contribution 418.32 15.07 6.30 6.30 Total: -1.00 -35.27 418.32 -9.90 -45.17 By element: Atomic # 1 Polarization: 13.34 SS G_CDS: -9.02 Total: 4.31 kcal Atomic # 6 Polarization: -2.16 SS G_CDS: -2.17 Total: -4.33 kcal Atomic # 7 Polarization: -55.10 SS G_CDS: -0.43 Total: -55.54 kcal Atomic # 8 Polarization: -13.06 SS G_CDS: 0.09 Total: -12.97 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -4.67 Total: 17.05 kcal Total LS contribution 6.30 Total: 6.30 kcal Total: -35.27 -9.90 -45.17 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459646243.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.128 kcal (2) G-P(sol) polarization free energy of solvation -35.269 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.141 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.898 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.167 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.039 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds