Wall clock time and date at job start Tue Mar 31 2020 17:19:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.08998 * 109.47430 * 2 1 4 4 C 1.53001 * 109.47368 * 240.00317 * 2 1 3 5 5 C 1.50698 * 109.47640 * 175.00107 * 4 2 1 6 6 H 1.08002 * 119.99542 * 359.97438 * 5 4 2 7 7 C 1.37868 * 120.00373 * 179.97438 * 5 4 2 8 8 N 1.31520 * 120.00297 * 359.97438 * 7 5 4 9 9 Si 1.86805 * 120.00289 * 179.97438 * 7 5 4 10 10 H 1.48505 * 109.46657 * 59.99909 * 9 7 5 11 11 H 1.48500 * 109.47232 * 179.97438 * 9 7 5 12 12 H 1.48495 * 109.47003 * 300.00234 * 9 7 5 13 13 N 1.46901 * 109.47443 * 120.00308 * 2 1 3 14 14 C 1.48608 * 111.00017 * 48.49107 * 13 2 1 15 15 C 1.54503 * 104.61252 * 201.21742 * 14 13 2 16 16 H 1.09002 * 110.45208 * 264.88142 * 15 14 13 17 17 C 1.50696 * 110.35929 * 142.62525 * 15 14 13 18 18 C 1.39874 * 126.03826 * 304.51857 * 17 15 14 19 19 N 1.30838 * 108.19936 * 179.97438 * 18 17 15 20 20 N 1.40083 * 108.20670 * 0.02562 * 19 18 17 21 21 C 1.46500 * 126.03855 * 180.02562 * 20 19 18 22 22 C 1.34943 * 107.92783 * 0.26126 * 20 19 18 23 23 C 1.53768 * 104.88055 * 23.77532 * 15 14 13 24 24 C 1.48682 * 110.99453 * 292.98309 * 13 2 1 25 25 C 1.52603 * 110.25621 * 240.92810 * 23 15 14 26 26 C 1.53205 * 109.19792 * 182.30350 * 25 23 15 27 27 O 1.42904 * 109.34124 * 56.68823 * 26 25 23 28 28 C 1.42912 * 114.22674 * 298.40076 * 27 26 25 29 29 C 1.52602 * 110.26819 * 118.81237 * 23 15 14 30 30 H 1.09000 * 109.47124 * 292.05353 * 1 2 3 31 31 H 1.08998 * 109.47389 * 52.05961 * 1 2 3 32 32 H 1.09005 * 109.46928 * 172.05440 * 1 2 3 33 33 H 1.09000 * 109.46822 * 294.99799 * 4 2 1 34 34 H 1.09002 * 109.47085 * 54.99438 * 4 2 1 35 35 H 0.96990 * 120.00311 * 179.97438 * 8 7 5 36 36 H 1.09002 * 110.40418 * 82.43364 * 14 13 2 37 37 H 1.09000 * 110.40616 * 320.00479 * 14 13 2 38 38 H 1.07997 * 125.89783 * 0.02562 * 18 17 15 39 39 H 1.09002 * 109.47253 * 90.02431 * 21 20 19 40 40 H 1.08999 * 109.46898 * 330.02387 * 21 20 19 41 41 H 1.08997 * 109.47277 * 210.02715 * 21 20 19 42 42 H 1.08002 * 126.13200 * 179.73796 * 22 20 19 43 43 H 1.08998 * 110.43180 * 39.89077 * 24 13 2 44 44 H 1.08993 * 110.43398 * 277.38340 * 24 13 2 45 45 H 1.08998 * 109.52149 * 302.21991 * 25 23 15 46 46 H 1.08997 * 109.51484 * 62.38806 * 25 23 15 47 47 H 1.09006 * 109.49336 * 296.73532 * 26 25 23 48 48 H 1.08995 * 109.49446 * 176.65625 * 26 25 23 49 49 H 1.09004 * 109.48617 * 301.64915 * 28 27 26 50 50 H 1.08998 * 109.52201 * 181.57686 * 28 27 26 51 51 H 1.08997 * 109.51873 * 297.61222 * 29 23 15 52 52 H 1.09006 * 109.51713 * 57.77969 * 29 23 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5419 -0.6149 -1.3128 6 1 4.0789 -0.0855 -0.5396 7 6 4.2304 -1.1934 -2.3578 8 7 3.5765 -1.8386 -3.2991 9 14 6.0920 -1.0610 -2.4369 10 1 6.6845 -1.6862 -1.2271 11 1 6.5871 -1.7622 -3.6487 12 1 6.4844 0.3699 -2.4972 13 7 2.0197 -0.6925 1.1994 14 6 1.3304 -1.9966 1.3801 15 6 1.5134 -2.3300 2.8776 16 1 2.3786 -2.9774 3.0207 17 6 0.2721 -2.9869 3.4241 18 6 -1.0248 -2.4655 3.3741 19 7 -1.8314 -3.3206 3.9486 20 7 -1.0720 -4.4144 4.3835 21 6 -1.5849 -5.5984 5.0773 22 6 0.2161 -4.1826 4.0552 23 6 1.7438 -0.9711 3.5594 24 6 1.6863 0.0726 2.4298 25 6 3.1133 -0.9428 4.2319 26 6 3.2939 0.3979 4.9511 27 8 2.2265 0.5825 5.8832 28 6 0.9287 0.6308 5.2866 29 6 0.6443 -0.6997 4.5822 30 1 -0.3633 0.3859 0.9525 31 1 -0.3634 0.6318 -0.8104 32 1 -0.3633 -1.0179 -0.1421 33 1 1.7517 -1.7714 -1.2056 34 1 1.6053 -0.2617 -2.1370 35 1 4.0608 -2.2452 -4.0344 36 1 1.7971 -2.7623 0.7604 37 1 0.2717 -1.9037 1.1380 38 1 -1.3111 -1.5208 2.9361 39 1 -1.8628 -6.3567 4.3452 40 1 -2.4601 -5.3238 5.6661 41 1 -0.8134 -5.9957 5.7369 42 1 1.0523 -4.8357 4.2571 43 1 0.6851 0.4970 2.3544 44 1 2.4219 0.8586 2.6002 45 1 3.1810 -1.7558 4.9549 46 1 3.8917 -1.0593 3.4779 47 1 3.2827 1.2069 4.2206 48 1 4.2455 0.4003 5.4825 49 1 0.8927 1.4421 4.5596 50 1 0.1789 0.8010 6.0591 51 1 -0.3191 -0.6448 4.0754 52 1 0.6244 -1.5041 5.3177 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000516185461.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:19:38 Heat of formation + Delta-G solvation = 24.714245 kcal Electronic energy + Delta-G solvation = -31082.620544 eV Core-core repulsion = 27276.216168 eV Total energy + Delta-G solvation = -3806.404376 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.61823 -41.10776 -39.08350 -36.51501 -34.65082 -34.01056 -32.43567 -32.06600 -31.64076 -29.51602 -29.03680 -27.23125 -26.91050 -25.35482 -24.51600 -23.96964 -23.24402 -21.80826 -20.93115 -20.11413 -19.46778 -18.30705 -17.76668 -16.99623 -16.89417 -16.65046 -16.43184 -16.32126 -16.11746 -15.62195 -15.17550 -15.10453 -14.88876 -14.72479 -14.39163 -13.96478 -13.84685 -13.76531 -13.57496 -13.53743 -13.25475 -13.23150 -12.89977 -12.70901 -12.60460 -12.48307 -12.38706 -12.25634 -12.12565 -12.07552 -11.74285 -11.70732 -11.59310 -11.11234 -11.07893 -10.95679 -10.90801 -10.45076 -10.37716 -10.15724 -9.17643 -8.94377 -8.06843 -6.11713 1.00157 1.43533 1.46317 1.53569 1.74544 1.84090 2.49800 3.04979 3.20657 3.32029 3.58360 3.69729 3.83151 3.92450 4.04223 4.19321 4.22419 4.29642 4.31099 4.35007 4.38411 4.41249 4.46581 4.47612 4.55116 4.58759 4.66033 4.71068 4.71900 4.77931 4.82875 4.85367 4.89786 4.91364 4.99886 5.10295 5.14950 5.22042 5.23532 5.27903 5.33705 5.40127 5.43586 5.49698 5.53692 5.70846 5.74276 5.92021 6.19516 6.27942 6.35219 6.36263 6.55507 6.77629 7.02183 7.54134 9.05153 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.011027 B = 0.004037 C = 0.003468 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2538.518149 B = 6933.486195 C = 8071.159190 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.084 3.916 3 H 0.063 0.937 4 C 0.042 3.958 5 C -0.498 4.498 6 H 0.059 0.941 7 C -0.005 4.005 8 N -0.942 5.942 9 Si 0.955 3.045 10 H -0.270 1.270 11 H -0.289 1.289 12 H -0.270 1.270 13 N -0.498 5.498 14 C 0.046 3.954 15 C 0.007 3.993 16 H 0.080 0.920 17 C -0.227 4.227 18 C 0.054 3.946 19 N -0.330 5.330 20 N -0.381 5.381 21 C 0.095 3.905 22 C 0.058 3.942 23 C -0.042 4.042 24 C 0.035 3.965 25 C -0.132 4.132 26 C 0.060 3.940 27 O -0.400 6.400 28 C 0.056 3.944 29 C -0.124 4.124 30 H 0.071 0.929 31 H 0.056 0.944 32 H 0.049 0.951 33 H -0.010 1.010 34 H -0.012 1.012 35 H 0.257 0.743 36 H 0.045 0.955 37 H 0.050 0.950 38 H 0.181 0.819 39 H 0.080 0.920 40 H 0.090 0.910 41 H 0.113 0.887 42 H 0.199 0.801 43 H 0.051 0.949 44 H 0.073 0.927 45 H 0.072 0.928 46 H 0.070 0.930 47 H 0.051 0.949 48 H 0.103 0.897 49 H 0.053 0.947 50 H 0.101 0.899 51 H 0.081 0.919 52 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.039 -2.734 21.636 23.243 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.024 4.024 3 H 0.082 0.918 4 C 0.005 3.995 5 C -0.536 4.536 6 H 0.077 0.923 7 C -0.200 4.200 8 N -0.584 5.584 9 Si 0.781 3.219 10 H -0.195 1.195 11 H -0.215 1.215 12 H -0.195 1.195 13 N -0.221 5.221 14 C -0.083 4.083 15 C -0.014 4.014 16 H 0.098 0.902 17 C -0.239 4.239 18 C -0.132 4.132 19 N -0.152 5.152 20 N -0.163 5.163 21 C -0.045 4.045 22 C -0.088 4.088 23 C -0.043 4.043 24 C -0.092 4.092 25 C -0.170 4.170 26 C -0.016 4.016 27 O -0.319 6.319 28 C -0.020 4.020 29 C -0.162 4.162 30 H 0.089 0.911 31 H 0.076 0.924 32 H 0.068 0.932 33 H 0.008 0.992 34 H 0.006 0.994 35 H 0.066 0.934 36 H 0.064 0.936 37 H 0.068 0.932 38 H 0.197 0.803 39 H 0.099 0.901 40 H 0.109 0.891 41 H 0.131 0.869 42 H 0.215 0.785 43 H 0.069 0.931 44 H 0.091 0.909 45 H 0.091 0.909 46 H 0.089 0.911 47 H 0.069 0.931 48 H 0.121 0.879 49 H 0.071 0.929 50 H 0.119 0.881 51 H 0.099 0.901 52 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -8.673 -3.274 22.016 23.888 hybrid contribution 0.827 0.056 -1.441 1.663 sum -7.847 -3.217 20.574 22.254 Atomic orbital electron populations 1.22397 0.97326 1.01514 1.02087 1.21699 0.92076 0.97330 0.91334 0.91849 1.18943 0.95224 0.93968 0.91397 1.21461 0.93212 1.32284 1.06635 0.92278 1.25844 1.02806 0.95659 0.95740 1.70096 1.37139 1.38085 1.13099 0.85648 0.80692 0.78358 0.77181 1.19545 1.21516 1.19501 1.65510 1.52895 1.02690 1.00974 1.23113 0.97066 0.92352 0.95722 1.20046 0.94058 0.95106 0.92154 0.90165 1.19873 0.95110 0.97810 1.11117 1.23759 0.91499 0.98974 0.98924 1.77274 1.20571 0.97025 1.20323 1.48689 1.05154 1.16749 1.45747 1.22140 1.02356 0.82810 0.97180 1.22724 0.88707 0.98111 0.99245 1.20786 0.95624 0.93910 0.93967 1.23333 0.99674 0.96485 0.89716 1.22054 0.96613 0.98702 0.99604 1.22701 0.90557 0.95975 0.92372 1.87856 1.15485 1.93636 1.34898 1.22771 0.84685 0.96529 0.98059 1.22299 0.98426 0.97822 0.97639 0.91056 0.92447 0.93179 0.99165 0.99398 0.93386 0.93649 0.93154 0.80258 0.90111 0.89139 0.86864 0.78465 0.93095 0.90861 0.90908 0.91109 0.93067 0.87894 0.92897 0.88132 0.90110 0.91829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.78 8.17 71.98 0.59 -5.20 16 2 C 0.08 3.40 2.29 44.91 0.10 3.51 16 3 H 0.06 2.60 8.12 -2.39 -0.02 2.58 16 4 C 0.04 2.20 4.46 29.85 0.13 2.33 16 5 C -0.50 -28.30 8.84 25.60 0.23 -28.08 16 6 H 0.06 3.30 7.74 -2.91 -0.02 3.28 16 7 C 0.00 -0.28 5.46 84.65 0.46 0.19 16 8 N -0.94 -58.34 13.29 21.44 0.28 -58.05 16 9 Si 0.96 45.51 29.54 68.60 2.03 47.53 16 10 H -0.27 -12.45 7.11 99.48 0.71 -11.75 16 11 H -0.29 -13.61 7.11 99.48 0.71 -12.90 16 12 H -0.27 -12.36 7.11 99.48 0.71 -11.65 16 13 N -0.50 -18.06 5.06 -856.61 -4.34 -22.39 16 14 C 0.05 1.55 5.06 86.48 0.44 1.99 16 15 C 0.01 0.17 3.12 -10.77 -0.03 0.14 16 16 H 0.08 2.13 7.68 -2.39 -0.02 2.11 16 17 C -0.23 -5.37 3.52 -20.14 -0.07 -5.44 16 18 C 0.05 1.31 8.71 85.24 0.74 2.06 16 19 N -0.33 -8.40 12.58 -57.02 -0.72 -9.12 16 20 N -0.38 -7.66 4.01 -369.57 -1.48 -9.15 16 21 C 0.10 1.03 11.47 127.77 1.47 2.50 16 22 C 0.06 1.16 11.39 83.54 0.95 2.11 16 23 C -0.04 -1.01 0.69 -51.88 -0.04 -1.05 16 24 C 0.04 0.99 4.40 86.26 0.38 1.37 16 25 C -0.13 -3.07 4.67 30.53 0.14 -2.93 16 26 C 0.06 1.31 6.64 72.05 0.48 1.79 16 27 O -0.40 -9.39 10.75 -148.98 -1.60 -10.99 16 28 C 0.06 1.13 6.65 72.05 0.48 1.60 16 29 C -0.12 -2.60 3.34 30.53 0.10 -2.50 16 30 H 0.07 1.94 6.09 -2.39 -0.01 1.93 16 31 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 32 H 0.05 1.72 6.40 -2.38 -0.02 1.71 16 33 H -0.01 -0.57 7.13 -2.39 -0.02 -0.59 16 34 H -0.01 -0.70 8.14 -2.39 -0.02 -0.72 16 35 H 0.26 15.18 8.31 -92.72 -0.77 14.41 16 36 H 0.04 1.86 7.68 -2.39 -0.02 1.84 16 37 H 0.05 1.68 4.55 -2.39 -0.01 1.67 16 38 H 0.18 4.06 7.02 -2.91 -0.02 4.04 16 39 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 40 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 41 H 0.11 0.58 8.14 -2.39 -0.02 0.56 16 42 H 0.20 2.66 8.06 -2.91 -0.02 2.64 16 43 H 0.05 1.32 5.60 -2.39 -0.01 1.30 16 44 H 0.07 2.08 6.17 -2.39 -0.01 2.06 16 45 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 46 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 47 H 0.05 1.14 6.51 -2.38 -0.02 1.12 16 48 H 0.10 1.94 8.14 -2.39 -0.02 1.92 16 49 H 0.05 1.03 7.54 -2.38 -0.02 1.01 16 50 H 0.10 1.73 8.14 -2.39 -0.02 1.71 16 51 H 0.08 1.66 4.82 -2.39 -0.01 1.65 16 52 H 0.06 1.44 7.40 -2.38 -0.02 1.42 16 Total: -1.00 -71.16 385.50 1.63 -69.53 By element: Atomic # 1 Polarization: 17.35 SS G_CDS: 0.90 Total: 18.25 kcal Atomic # 6 Polarization: -32.16 SS G_CDS: 6.55 Total: -25.61 kcal Atomic # 7 Polarization: -92.46 SS G_CDS: -6.25 Total: -98.71 kcal Atomic # 8 Polarization: -9.39 SS G_CDS: -1.60 Total: -10.99 kcal Atomic # 14 Polarization: 45.51 SS G_CDS: 2.03 Total: 47.53 kcal Total: -71.16 1.63 -69.53 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000516185461.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.244 kcal (2) G-P(sol) polarization free energy of solvation -71.157 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.087 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.627 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.530 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.714 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds