Wall clock time and date at job start Tue Mar 31 2020 17:19:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 109.47155 * 2 1 4 4 C 1.52998 * 109.47262 * 120.00251 * 2 1 3 5 5 C 1.50701 * 109.46858 * 294.57783 * 4 2 1 6 6 H 1.07998 * 120.00260 * 355.62379 * 5 4 2 7 7 C 1.37874 * 120.00092 * 175.61953 * 5 4 2 8 8 N 1.31519 * 120.00103 * 0.02562 * 7 5 4 9 9 Si 1.86798 * 120.00435 * 180.02562 * 7 5 4 10 10 H 1.48502 * 109.47091 * 90.00152 * 9 7 5 11 11 H 1.48496 * 109.47453 * 210.00307 * 9 7 5 12 12 H 1.48504 * 109.46763 * 330.00523 * 9 7 5 13 13 N 1.46901 * 109.47104 * 240.00243 * 2 1 3 14 14 C 1.48606 * 111.00043 * 176.93366 * 13 2 1 15 15 C 1.54505 * 104.60853 * 201.21304 * 14 13 2 16 16 H 1.09001 * 110.36241 * 264.91622 * 15 14 13 17 17 C 1.50710 * 110.35822 * 142.61910 * 15 14 13 18 18 C 1.39869 * 126.03563 * 315.94070 * 17 15 14 19 19 N 1.30843 * 108.19895 * 179.81365 * 18 17 15 20 20 N 1.40086 * 108.20580 * 0.43890 * 19 18 17 21 21 C 1.46494 * 126.03881 * 179.69339 * 20 19 18 22 22 C 1.34950 * 107.92088 * 359.72059 * 20 19 18 23 23 C 1.53764 * 104.88511 * 23.77203 * 15 14 13 24 24 C 1.48667 * 111.00490 * 61.41703 * 13 2 1 25 25 C 1.52605 * 110.25384 * 240.92864 * 23 15 14 26 26 C 1.53198 * 109.19715 * 182.30523 * 25 23 15 27 27 O 1.42905 * 109.34592 * 56.69278 * 26 25 23 28 28 C 1.42912 * 114.21358 * 298.39216 * 27 26 25 29 29 C 1.52599 * 110.27118 * 118.81209 * 23 15 14 30 30 H 1.08997 * 109.46710 * 59.99849 * 1 2 3 31 31 H 1.08998 * 109.46656 * 180.02562 * 1 2 3 32 32 H 1.08992 * 109.47004 * 299.99982 * 1 2 3 33 33 H 1.08992 * 109.47546 * 54.58044 * 4 2 1 34 34 H 1.09003 * 109.47519 * 174.58394 * 4 2 1 35 35 H 0.97001 * 120.00374 * 179.97438 * 8 7 5 36 36 H 1.08994 * 110.40876 * 82.43506 * 14 13 2 37 37 H 1.09000 * 110.50628 * 320.04308 * 14 13 2 38 38 H 1.07992 * 125.90169 * 359.97438 * 18 17 15 39 39 H 1.08994 * 109.47571 * 270.02700 * 21 20 19 40 40 H 1.09001 * 109.46953 * 30.02842 * 21 20 19 41 41 H 1.09003 * 109.47146 * 150.02759 * 21 20 19 42 42 H 1.08010 * 126.12405 * 179.97438 * 22 20 19 43 43 H 1.09001 * 110.42935 * 277.39184 * 24 13 2 44 44 H 1.09004 * 110.43040 * 39.76595 * 24 13 2 45 45 H 1.09001 * 109.52114 * 302.22229 * 25 23 15 46 46 H 1.09004 * 109.51988 * 62.39250 * 25 23 15 47 47 H 1.09000 * 109.49717 * 296.72410 * 26 25 23 48 48 H 1.09007 * 109.49356 * 176.65463 * 26 25 23 49 49 H 1.08998 * 109.49873 * 301.64916 * 28 27 26 50 50 H 1.09004 * 109.51332 * 181.57689 * 28 27 26 51 51 H 1.09000 * 109.51718 * 297.60405 * 29 23 15 52 52 H 1.08998 * 109.51699 * 57.77508 * 29 23 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.6503 0.0624 2.4760 6 1 1.1569 1.0175 2.3725 7 6 1.9236 -0.4399 3.7305 8 7 2.5249 -1.6028 3.8566 9 14 1.4399 0.5310 5.2513 10 1 0.0675 0.1465 5.6683 11 1 2.3927 0.2353 6.3512 12 1 1.4749 1.9833 4.9431 13 7 2.0197 -0.6924 -1.1995 14 6 3.5033 -0.6483 -1.2715 15 6 3.8286 -0.8934 -2.7619 16 1 4.0351 -1.9493 -2.9364 17 6 5.0036 -0.0510 -3.1875 18 6 5.2078 1.2961 -2.8712 19 7 6.3357 1.6769 -3.4140 20 7 6.8807 0.5852 -4.1023 21 6 8.1363 0.5819 -4.8570 22 6 6.0443 -0.4625 -3.9479 23 6 2.5607 -0.4641 -3.5186 24 6 1.5713 0.0012 -2.4356 25 6 1.9794 -1.6463 -4.2888 26 6 0.7526 -1.1790 -5.0783 27 8 1.1258 -0.1005 -5.9385 28 6 1.6123 1.0550 -5.2525 29 6 2.8771 0.6858 -4.4706 30 1 -0.3632 0.5139 -0.8900 31 1 -0.3632 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8899 33 1 1.5997 -1.7171 1.2991 34 1 3.1257 -0.8061 1.2020 35 1 2.7175 -1.9561 4.7393 36 1 3.9374 -1.4343 -0.6536 37 1 3.8720 0.3282 -0.9576 38 1 4.5496 1.9143 -2.2789 39 1 7.9392 0.8620 -5.8917 40 1 8.8291 1.2966 -4.4127 41 1 8.5750 -0.4156 -4.8279 42 1 6.1811 -1.4522 -4.3582 43 1 0.5557 -0.2994 -2.6934 44 1 1.6262 1.0822 -2.3066 45 1 2.7288 -2.0363 -4.9776 46 1 1.6854 -2.4282 -3.5884 47 1 -0.0189 -0.8418 -4.3860 48 1 0.3686 -2.0053 -5.6767 49 1 0.8501 1.4158 -4.5619 50 1 1.8468 1.8360 -5.9758 51 1 3.2166 1.5493 -3.8985 52 1 3.6583 0.3786 -5.1659 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000516185462.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:19:42 Heat of formation + Delta-G solvation = 33.374392 kcal Electronic energy + Delta-G solvation = -30677.153977 eV Core-core repulsion = 26871.125133 eV Total energy + Delta-G solvation = -3806.028844 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.63406 -40.09099 -37.79670 -35.19559 -33.32665 -32.64344 -31.46502 -31.17182 -30.47856 -28.50990 -27.08753 -26.15767 -25.91266 -23.74910 -23.63641 -22.42646 -21.94906 -20.95169 -19.77769 -19.02774 -18.42591 -16.89403 -16.45492 -16.11698 -16.00083 -15.47765 -15.21509 -14.95210 -14.57723 -14.46204 -14.30836 -14.02922 -13.90374 -13.32459 -13.10416 -12.92308 -12.85358 -12.70395 -12.48839 -12.21686 -12.10467 -11.78060 -11.57695 -11.39351 -11.28662 -11.26762 -10.94755 -10.84676 -10.76781 -10.68198 -10.65557 -10.34156 -10.13862 -10.02666 -9.81089 -9.46482 -9.33187 -9.16032 -9.06278 -8.31939 -8.26886 -7.79777 -5.97003 -3.98471 1.85479 2.46872 2.78698 3.33114 3.39662 3.42418 3.88145 4.30682 4.45507 4.57161 4.62779 4.75415 4.81918 4.90438 4.91952 5.04775 5.06859 5.16553 5.22233 5.23307 5.33788 5.38953 5.46272 5.48265 5.57992 5.65423 5.72155 5.74699 5.76592 5.81824 5.94915 6.02115 6.05793 6.09695 6.12297 6.23732 6.31324 6.36262 6.37390 6.47360 6.55330 6.63577 6.69189 6.92763 6.96177 7.14154 7.19832 7.48844 7.57081 7.67312 7.79123 7.90371 8.11124 8.46967 9.08087 9.64618 11.14308 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.011247 B = 0.003665 C = 0.002996 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2488.945511 B = 7637.245648 C = 9344.799977 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.076 3.924 3 H 0.027 0.973 4 C 0.035 3.965 5 C -0.516 4.516 6 H 0.054 0.946 7 C 0.059 3.941 8 N -0.893 5.893 9 Si 0.888 3.112 10 H -0.281 1.281 11 H -0.287 1.287 12 H -0.275 1.275 13 N -0.503 5.503 14 C 0.048 3.952 15 C -0.006 4.006 16 H 0.083 0.917 17 C -0.209 4.209 18 C 0.059 3.941 19 N -0.299 5.299 20 N -0.382 5.382 21 C 0.105 3.895 22 C 0.051 3.949 23 C -0.052 4.052 24 C 0.039 3.961 25 C -0.135 4.135 26 C 0.059 3.941 27 O -0.387 6.387 28 C 0.059 3.941 29 C -0.132 4.132 30 H 0.029 0.971 31 H 0.054 0.946 32 H 0.065 0.935 33 H 0.026 0.974 34 H 0.013 0.987 35 H 0.259 0.741 36 H 0.083 0.917 37 H 0.044 0.956 38 H 0.178 0.822 39 H 0.071 0.929 40 H 0.086 0.914 41 H 0.084 0.916 42 H 0.170 0.830 43 H 0.075 0.925 44 H 0.038 0.962 45 H 0.066 0.934 46 H 0.083 0.917 47 H 0.053 0.947 48 H 0.089 0.911 49 H 0.049 0.951 50 H 0.086 0.914 51 H 0.074 0.926 52 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.128 1.492 -21.446 22.101 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.031 4.031 3 H 0.045 0.955 4 C -0.003 4.003 5 C -0.555 4.555 6 H 0.072 0.928 7 C -0.142 4.142 8 N -0.533 5.533 9 Si 0.716 3.284 10 H -0.207 1.207 11 H -0.213 1.213 12 H -0.200 1.200 13 N -0.227 5.227 14 C -0.080 4.080 15 C -0.027 4.027 16 H 0.101 0.899 17 C -0.221 4.221 18 C -0.127 4.127 19 N -0.120 5.120 20 N -0.164 5.164 21 C -0.037 4.037 22 C -0.094 4.094 23 C -0.052 4.052 24 C -0.089 4.089 25 C -0.172 4.172 26 C -0.018 4.018 27 O -0.306 6.306 28 C -0.018 4.018 29 C -0.170 4.170 30 H 0.048 0.952 31 H 0.073 0.927 32 H 0.084 0.916 33 H 0.045 0.955 34 H 0.032 0.968 35 H 0.069 0.931 36 H 0.101 0.899 37 H 0.062 0.938 38 H 0.195 0.805 39 H 0.089 0.911 40 H 0.105 0.895 41 H 0.103 0.897 42 H 0.187 0.813 43 H 0.094 0.906 44 H 0.056 0.944 45 H 0.084 0.916 46 H 0.102 0.898 47 H 0.071 0.929 48 H 0.108 0.892 49 H 0.068 0.932 50 H 0.104 0.896 51 H 0.092 0.908 52 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 5.946 1.779 -21.714 22.583 hybrid contribution -0.349 0.665 1.423 1.609 sum 5.597 2.443 -20.291 21.190 Atomic orbital electron populations 1.21704 0.95361 1.01515 0.99976 1.22016 0.95060 0.95247 0.90816 0.95475 1.19100 0.96027 0.96079 0.89063 1.21194 1.38451 1.04931 0.90938 0.92805 1.24972 0.95327 0.94978 0.98968 1.69969 1.41931 1.18148 1.23207 0.86655 0.78303 0.80409 0.82998 1.20693 1.21300 1.19963 1.65507 1.06384 1.49321 1.01488 1.23099 0.89499 1.01199 0.94197 1.20253 0.89777 0.97840 0.94792 0.89909 1.19922 0.99453 0.95299 1.07398 1.23714 0.94602 0.95187 0.99205 1.77356 1.11633 1.09493 1.13506 1.48368 1.18904 1.07988 1.41182 1.21782 0.82618 1.03931 0.95369 1.22247 0.91970 0.93993 1.01235 1.20903 0.94883 0.94998 0.94463 1.23203 0.98517 0.96373 0.90781 1.22100 0.98030 0.98068 0.99046 1.22666 0.96013 0.89588 0.93492 1.87870 1.84160 1.24610 1.33978 1.22650 0.95125 0.87839 0.96192 1.22267 0.97821 0.98645 0.98304 0.95240 0.92716 0.91642 0.95512 0.96824 0.93086 0.89867 0.93795 0.80519 0.91068 0.89508 0.89699 0.81283 0.90642 0.94424 0.91564 0.89829 0.92877 0.89236 0.93226 0.89559 0.90794 0.91305 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.42 8.90 37.16 0.33 -2.09 16 2 C 0.08 1.56 1.85 -67.71 -0.13 1.43 16 3 H 0.03 0.57 7.98 -51.93 -0.41 0.16 16 4 C 0.03 0.88 4.48 -27.88 -0.12 0.76 16 5 C -0.52 -14.31 8.33 -34.44 -0.29 -14.60 16 6 H 0.05 1.46 7.25 -52.49 -0.38 1.07 16 7 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 8 N -0.89 -26.71 13.29 55.43 0.74 -25.97 16 9 Si 0.89 21.61 29.54 -169.99 -5.02 16.58 16 10 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 11 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 12 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 13 N -0.50 -8.69 5.20 -222.12 -1.15 -9.85 16 14 C 0.05 0.79 4.98 -2.09 -0.01 0.78 16 15 C -0.01 -0.08 3.13 -90.58 -0.28 -0.37 16 16 H 0.08 1.02 7.70 -51.93 -0.40 0.62 16 17 C -0.21 -2.57 3.27 -105.05 -0.34 -2.91 16 18 C 0.06 0.79 8.80 -17.36 -0.15 0.64 16 19 N -0.30 -4.11 12.58 30.62 0.39 -3.73 16 20 N -0.38 -4.22 4.01 -68.17 -0.27 -4.49 16 21 C 0.10 0.69 11.47 59.84 0.69 1.38 16 22 C 0.05 0.54 11.33 -17.23 -0.20 0.34 16 23 C -0.05 -0.62 0.69 -154.05 -0.11 -0.73 16 24 C 0.04 0.56 3.45 -2.38 -0.01 0.55 16 25 C -0.13 -1.49 4.67 -26.83 -0.13 -1.62 16 26 C 0.06 0.64 6.64 37.26 0.25 0.88 16 27 O -0.39 -4.74 10.75 -35.23 -0.38 -5.12 16 28 C 0.06 0.65 6.65 37.27 0.25 0.89 16 29 C -0.13 -1.50 3.52 -26.83 -0.09 -1.60 16 30 H 0.03 0.47 6.99 -51.93 -0.36 0.11 16 31 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 32 H 0.06 1.31 7.07 -51.93 -0.37 0.95 16 33 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.01 0.37 6.77 -51.93 -0.35 0.01 16 35 H 0.26 7.35 8.31 -40.82 -0.34 7.02 16 36 H 0.08 1.51 7.57 -51.93 -0.39 1.12 16 37 H 0.04 0.76 6.48 -51.93 -0.34 0.42 16 38 H 0.18 2.28 7.44 -52.49 -0.39 1.89 16 39 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 40 H 0.09 0.56 8.14 -51.93 -0.42 0.13 16 41 H 0.08 0.37 8.14 -51.93 -0.42 -0.06 16 42 H 0.17 1.29 8.06 -52.48 -0.42 0.87 16 43 H 0.08 1.05 5.73 -51.93 -0.30 0.75 16 44 H 0.04 0.55 7.58 -51.93 -0.39 0.15 16 45 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 46 H 0.08 0.98 8.14 -51.93 -0.42 0.55 16 47 H 0.05 0.58 6.52 -51.93 -0.34 0.24 16 48 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 49 H 0.05 0.54 7.54 -51.93 -0.39 0.15 16 50 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 51 H 0.07 0.87 5.75 -51.93 -0.30 0.57 16 52 H 0.07 0.83 7.35 -51.93 -0.38 0.45 16 LS Contribution 389.66 15.07 5.87 5.87 Total: -1.00 -32.09 389.66 -9.14 -41.23 By element: Atomic # 1 Polarization: 9.03 SS G_CDS: -8.86 Total: 0.17 kcal Atomic # 6 Polarization: -14.24 SS G_CDS: -0.44 Total: -14.68 kcal Atomic # 7 Polarization: -43.74 SS G_CDS: -0.31 Total: -44.05 kcal Atomic # 8 Polarization: -4.74 SS G_CDS: -0.38 Total: -5.12 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.58 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -32.09 -9.14 -41.23 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000516185462.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.602 kcal (2) G-P(sol) polarization free energy of solvation -32.092 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.510 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.136 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.227 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.374 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds