Wall clock time and date at job start Tue Mar 31 2020 17:19:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 109.47155 * 2 1 4 4 C 1.52998 * 109.47262 * 120.00251 * 2 1 3 5 5 C 1.50701 * 109.46858 * 294.57783 * 4 2 1 6 6 H 1.07998 * 120.00260 * 355.62379 * 5 4 2 7 7 C 1.37874 * 120.00092 * 175.61953 * 5 4 2 8 8 N 1.31519 * 120.00103 * 0.02562 * 7 5 4 9 9 Si 1.86798 * 120.00435 * 180.02562 * 7 5 4 10 10 H 1.48502 * 109.47091 * 90.00152 * 9 7 5 11 11 H 1.48496 * 109.47453 * 210.00307 * 9 7 5 12 12 H 1.48504 * 109.46763 * 330.00523 * 9 7 5 13 13 N 1.46901 * 109.47104 * 240.00243 * 2 1 3 14 14 C 1.48606 * 111.00043 * 176.93366 * 13 2 1 15 15 C 1.54505 * 104.60853 * 201.21304 * 14 13 2 16 16 H 1.09001 * 110.36241 * 264.91622 * 15 14 13 17 17 C 1.50710 * 110.35822 * 142.61910 * 15 14 13 18 18 C 1.39869 * 126.03563 * 315.94070 * 17 15 14 19 19 N 1.30843 * 108.19895 * 179.81365 * 18 17 15 20 20 N 1.40086 * 108.20580 * 0.43890 * 19 18 17 21 21 C 1.46494 * 126.03881 * 179.69339 * 20 19 18 22 22 C 1.34950 * 107.92088 * 359.72059 * 20 19 18 23 23 C 1.53764 * 104.88511 * 23.77203 * 15 14 13 24 24 C 1.48667 * 111.00490 * 61.41703 * 13 2 1 25 25 C 1.52605 * 110.25384 * 240.92864 * 23 15 14 26 26 C 1.53198 * 109.19715 * 182.30523 * 25 23 15 27 27 O 1.42905 * 109.34592 * 56.69278 * 26 25 23 28 28 C 1.42912 * 114.21358 * 298.39216 * 27 26 25 29 29 C 1.52599 * 110.27118 * 118.81209 * 23 15 14 30 30 H 1.08997 * 109.46710 * 59.99849 * 1 2 3 31 31 H 1.08998 * 109.46656 * 180.02562 * 1 2 3 32 32 H 1.08992 * 109.47004 * 299.99982 * 1 2 3 33 33 H 1.08992 * 109.47546 * 54.58044 * 4 2 1 34 34 H 1.09003 * 109.47519 * 174.58394 * 4 2 1 35 35 H 0.97001 * 120.00374 * 179.97438 * 8 7 5 36 36 H 1.08994 * 110.40876 * 82.43506 * 14 13 2 37 37 H 1.09000 * 110.50628 * 320.04308 * 14 13 2 38 38 H 1.07992 * 125.90169 * 359.97438 * 18 17 15 39 39 H 1.08994 * 109.47571 * 270.02700 * 21 20 19 40 40 H 1.09001 * 109.46953 * 30.02842 * 21 20 19 41 41 H 1.09003 * 109.47146 * 150.02759 * 21 20 19 42 42 H 1.08010 * 126.12405 * 179.97438 * 22 20 19 43 43 H 1.09001 * 110.42935 * 277.39184 * 24 13 2 44 44 H 1.09004 * 110.43040 * 39.76595 * 24 13 2 45 45 H 1.09001 * 109.52114 * 302.22229 * 25 23 15 46 46 H 1.09004 * 109.51988 * 62.39250 * 25 23 15 47 47 H 1.09000 * 109.49717 * 296.72410 * 26 25 23 48 48 H 1.09007 * 109.49356 * 176.65463 * 26 25 23 49 49 H 1.08998 * 109.49873 * 301.64916 * 28 27 26 50 50 H 1.09004 * 109.51332 * 181.57689 * 28 27 26 51 51 H 1.09000 * 109.51718 * 297.60405 * 29 23 15 52 52 H 1.08998 * 109.51699 * 57.77508 * 29 23 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.6503 0.0624 2.4760 6 1 1.1569 1.0175 2.3725 7 6 1.9236 -0.4399 3.7305 8 7 2.5249 -1.6028 3.8566 9 14 1.4399 0.5310 5.2513 10 1 0.0675 0.1465 5.6683 11 1 2.3927 0.2353 6.3512 12 1 1.4749 1.9833 4.9431 13 7 2.0197 -0.6924 -1.1995 14 6 3.5033 -0.6483 -1.2715 15 6 3.8286 -0.8934 -2.7619 16 1 4.0351 -1.9493 -2.9364 17 6 5.0036 -0.0510 -3.1875 18 6 5.2078 1.2961 -2.8712 19 7 6.3357 1.6769 -3.4140 20 7 6.8807 0.5852 -4.1023 21 6 8.1363 0.5819 -4.8570 22 6 6.0443 -0.4625 -3.9479 23 6 2.5607 -0.4641 -3.5186 24 6 1.5713 0.0012 -2.4356 25 6 1.9794 -1.6463 -4.2888 26 6 0.7526 -1.1790 -5.0783 27 8 1.1258 -0.1005 -5.9385 28 6 1.6123 1.0550 -5.2525 29 6 2.8771 0.6858 -4.4706 30 1 -0.3632 0.5139 -0.8900 31 1 -0.3632 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8899 33 1 1.5997 -1.7171 1.2991 34 1 3.1257 -0.8061 1.2020 35 1 2.7175 -1.9561 4.7393 36 1 3.9374 -1.4343 -0.6536 37 1 3.8720 0.3282 -0.9576 38 1 4.5496 1.9143 -2.2789 39 1 7.9392 0.8620 -5.8917 40 1 8.8291 1.2966 -4.4127 41 1 8.5750 -0.4156 -4.8279 42 1 6.1811 -1.4522 -4.3582 43 1 0.5557 -0.2994 -2.6934 44 1 1.6262 1.0822 -2.3066 45 1 2.7288 -2.0363 -4.9776 46 1 1.6854 -2.4282 -3.5884 47 1 -0.0189 -0.8418 -4.3860 48 1 0.3686 -2.0053 -5.6767 49 1 0.8501 1.4158 -4.5619 50 1 1.8468 1.8360 -5.9758 51 1 3.2166 1.5493 -3.8985 52 1 3.6583 0.3786 -5.1659 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000516185462.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:19:41 Heat of formation + Delta-G solvation = 12.423367 kcal Electronic energy + Delta-G solvation = -30678.062481 eV Core-core repulsion = 26871.125133 eV Total energy + Delta-G solvation = -3806.937349 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.58802 -41.09615 -38.97365 -36.61439 -34.72442 -34.02221 -32.60302 -32.11732 -31.79129 -29.75308 -28.53394 -27.46731 -26.89884 -25.31521 -24.51676 -23.93823 -23.02721 -21.84164 -20.82788 -20.62087 -19.42818 -18.63545 -17.65748 -17.14963 -16.89074 -16.63987 -16.36894 -16.16658 -16.04808 -15.56471 -15.45601 -15.22153 -15.02717 -14.45515 -14.31796 -14.11602 -13.95159 -13.79470 -13.64686 -13.42271 -13.22828 -13.07698 -12.95487 -12.80336 -12.75289 -12.60896 -12.45887 -12.28257 -12.14815 -12.03934 -11.81080 -11.74959 -11.57328 -11.24572 -11.09462 -11.01943 -10.90278 -10.51772 -10.36406 -10.22276 -9.28525 -9.15604 -8.16966 -6.26351 0.98503 1.39850 1.40748 1.51337 1.73559 1.81433 2.41284 3.04255 3.14991 3.16673 3.55218 3.65986 3.78062 3.87638 4.04363 4.18857 4.26062 4.27866 4.30023 4.31313 4.36650 4.40616 4.45173 4.47167 4.59901 4.62819 4.69204 4.70089 4.71543 4.76023 4.81752 4.85149 4.88467 4.90264 5.03587 5.08775 5.11461 5.21433 5.24794 5.25643 5.31604 5.40998 5.43543 5.49046 5.51427 5.67136 5.73208 5.81479 6.08117 6.19238 6.23128 6.34483 6.40679 6.75450 6.89911 7.41645 8.95086 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.011247 B = 0.003665 C = 0.002996 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2488.945511 B = 7637.245648 C = 9344.799977 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.087 3.913 3 H 0.019 0.981 4 C 0.046 3.954 5 C -0.532 4.532 6 H 0.059 0.941 7 C 0.003 3.997 8 N -0.932 5.932 9 Si 0.959 3.041 10 H -0.272 1.272 11 H -0.284 1.284 12 H -0.265 1.265 13 N -0.510 5.510 14 C 0.049 3.951 15 C 0.008 3.992 16 H 0.092 0.908 17 C -0.227 4.227 18 C 0.047 3.953 19 N -0.331 5.331 20 N -0.379 5.379 21 C 0.094 3.906 22 C 0.064 3.936 23 C -0.043 4.043 24 C 0.043 3.957 25 C -0.130 4.130 26 C 0.058 3.942 27 O -0.398 6.398 28 C 0.058 3.942 29 C -0.120 4.120 30 H 0.061 0.939 31 H 0.048 0.952 32 H 0.051 0.949 33 H -0.007 1.007 34 H -0.014 1.014 35 H 0.262 0.738 36 H 0.055 0.945 37 H 0.029 0.971 38 H 0.169 0.831 39 H 0.087 0.913 40 H 0.085 0.915 41 H 0.114 0.886 42 H 0.205 0.795 43 H 0.083 0.917 44 H 0.035 0.965 45 H 0.078 0.922 46 H 0.077 0.923 47 H 0.051 0.949 48 H 0.107 0.893 49 H 0.050 0.950 50 H 0.098 0.902 51 H 0.066 0.934 52 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.054 1.698 -23.433 24.032 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.021 4.021 3 H 0.036 0.964 4 C 0.009 3.991 5 C -0.570 4.570 6 H 0.077 0.923 7 C -0.195 4.195 8 N -0.572 5.572 9 Si 0.784 3.216 10 H -0.197 1.197 11 H -0.210 1.210 12 H -0.189 1.189 13 N -0.234 5.234 14 C -0.079 4.079 15 C -0.012 4.012 16 H 0.111 0.889 17 C -0.239 4.239 18 C -0.138 4.138 19 N -0.154 5.154 20 N -0.162 5.162 21 C -0.045 4.045 22 C -0.083 4.083 23 C -0.044 4.044 24 C -0.085 4.085 25 C -0.168 4.168 26 C -0.018 4.018 27 O -0.317 6.317 28 C -0.019 4.019 29 C -0.158 4.158 30 H 0.080 0.920 31 H 0.067 0.933 32 H 0.070 0.930 33 H 0.012 0.988 34 H 0.004 0.996 35 H 0.070 0.930 36 H 0.073 0.927 37 H 0.047 0.953 38 H 0.186 0.814 39 H 0.105 0.895 40 H 0.104 0.896 41 H 0.132 0.868 42 H 0.222 0.778 43 H 0.102 0.898 44 H 0.054 0.946 45 H 0.096 0.904 46 H 0.096 0.904 47 H 0.069 0.931 48 H 0.125 0.875 49 H 0.068 0.932 50 H 0.117 0.883 51 H 0.085 0.915 52 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 5.874 2.005 -23.722 24.521 hybrid contribution -0.233 0.568 1.998 2.090 sum 5.642 2.572 -21.725 22.592 Atomic orbital electron populations 1.21600 0.93885 1.01372 1.00863 1.21707 0.96123 0.94057 0.90242 0.96353 1.18890 0.94060 0.94747 0.91408 1.21581 1.38197 1.05245 0.91989 0.92329 1.25885 0.95205 0.95968 1.02449 1.70110 1.43139 1.19891 1.24074 0.85542 0.78185 0.79202 0.78705 1.19700 1.20974 1.18917 1.65418 1.06997 1.49386 1.01567 1.23027 0.88867 0.99351 0.96668 1.20096 0.90667 0.98573 0.91886 0.88940 1.19857 1.00212 0.94861 1.08973 1.23671 0.94772 0.95805 0.99529 1.77287 1.12077 1.11230 1.14785 1.48734 1.19755 1.07285 1.40400 1.22161 0.80972 1.05826 0.95576 1.22744 0.90741 0.95022 0.99745 1.20840 0.93756 0.95883 0.93945 1.23256 0.99507 0.96011 0.89732 1.22065 0.98546 0.97198 0.98971 1.22755 0.95643 0.89812 0.93638 1.87864 1.84205 1.25049 1.34593 1.22715 0.94753 0.87934 0.96484 1.22130 0.97989 0.97881 0.97819 0.92016 0.93314 0.93013 0.98815 0.99576 0.92951 0.92675 0.95269 0.81435 0.89453 0.89600 0.86807 0.77783 0.89843 0.94631 0.90386 0.90410 0.93079 0.87478 0.93168 0.88346 0.91505 0.91418 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.53 8.90 71.98 0.64 -3.89 16 2 C 0.09 3.67 1.85 44.91 0.08 3.75 16 3 H 0.02 0.81 7.98 -2.39 -0.02 0.79 16 4 C 0.05 2.48 4.48 29.85 0.13 2.62 16 5 C -0.53 -30.31 8.33 25.60 0.21 -30.10 16 6 H 0.06 3.21 7.25 -2.91 -0.02 3.19 16 7 C 0.00 0.15 5.46 84.65 0.46 0.61 16 8 N -0.93 -57.39 13.29 21.45 0.28 -57.11 16 9 Si 0.96 44.79 29.54 68.60 2.03 46.81 16 10 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 11 H -0.28 -13.05 7.11 99.48 0.71 -12.34 16 12 H -0.26 -11.86 7.11 99.48 0.71 -11.15 16 13 N -0.51 -18.04 5.20 -856.65 -4.45 -22.49 16 14 C 0.05 1.69 4.98 86.48 0.43 2.12 16 15 C 0.01 0.20 3.13 -10.77 -0.03 0.17 16 16 H 0.09 2.15 7.70 -2.39 -0.02 2.13 16 17 C -0.23 -5.41 3.27 -20.14 -0.07 -5.48 16 18 C 0.05 1.28 8.80 85.24 0.75 2.03 16 19 N -0.33 -9.04 12.58 -57.03 -0.72 -9.75 16 20 N -0.38 -7.69 4.01 -369.58 -1.48 -9.17 16 21 C 0.09 1.01 11.47 127.77 1.47 2.47 16 22 C 0.06 1.21 11.33 83.54 0.95 2.16 16 23 C -0.04 -0.99 0.69 -51.89 -0.04 -1.03 16 24 C 0.04 1.17 3.45 86.26 0.30 1.47 16 25 C -0.13 -2.60 4.67 30.53 0.14 -2.46 16 26 C 0.06 1.10 6.64 72.05 0.48 1.58 16 27 O -0.40 -8.76 10.75 -148.98 -1.60 -10.36 16 28 C 0.06 1.15 6.65 72.05 0.48 1.63 16 29 C -0.12 -2.55 3.52 30.53 0.11 -2.44 16 30 H 0.06 1.92 6.99 -2.39 -0.02 1.90 16 31 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 32 H 0.05 2.08 7.07 -2.39 -0.02 2.06 16 33 H -0.01 -0.39 8.14 -2.39 -0.02 -0.41 16 34 H -0.01 -0.82 6.77 -2.39 -0.02 -0.84 16 35 H 0.26 15.18 8.31 -92.71 -0.77 14.41 16 36 H 0.05 2.16 7.57 -2.39 -0.02 2.14 16 37 H 0.03 1.07 6.48 -2.39 -0.02 1.06 16 38 H 0.17 4.61 7.44 -2.91 -0.02 4.59 16 39 H 0.09 0.68 8.14 -2.39 -0.02 0.66 16 40 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 41 H 0.11 0.57 8.14 -2.39 -0.02 0.55 16 42 H 0.21 2.30 8.06 -2.91 -0.02 2.28 16 43 H 0.08 2.19 5.73 -2.39 -0.01 2.17 16 44 H 0.04 1.01 7.58 -2.38 -0.02 0.99 16 45 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 46 H 0.08 1.68 8.14 -2.38 -0.02 1.66 16 47 H 0.05 1.00 6.52 -2.39 -0.02 0.98 16 48 H 0.11 1.67 8.14 -2.38 -0.02 1.66 16 49 H 0.05 1.00 7.54 -2.39 -0.02 0.98 16 50 H 0.10 1.72 8.14 -2.39 -0.02 1.71 16 51 H 0.07 1.54 5.75 -2.39 -0.01 1.52 16 52 H 0.07 1.48 7.35 -2.39 -0.02 1.46 16 Total: -1.00 -71.46 389.66 1.44 -70.02 By element: Atomic # 1 Polarization: 15.92 SS G_CDS: 0.89 Total: 16.82 kcal Atomic # 6 Polarization: -31.26 SS G_CDS: 6.50 Total: -24.77 kcal Atomic # 7 Polarization: -92.16 SS G_CDS: -6.37 Total: -98.52 kcal Atomic # 8 Polarization: -8.76 SS G_CDS: -1.60 Total: -10.36 kcal Atomic # 14 Polarization: 44.79 SS G_CDS: 2.03 Total: 46.81 kcal Total: -71.46 1.44 -70.02 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000516185462.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.445 kcal (2) G-P(sol) polarization free energy of solvation -71.465 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.980 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.443 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.021 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.423 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds