Wall clock time and date at job start Tue Mar 31 2020 17:19:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08999 * 109.47041 * 2 1 4 4 C 1.53001 * 109.47120 * 120.00300 * 2 1 3 5 5 C 1.50698 * 109.46931 * 184.99896 * 4 2 1 6 6 H 1.07995 * 120.00048 * 359.97438 * 5 4 2 7 7 C 1.37882 * 119.99884 * 180.02562 * 5 4 2 8 8 N 1.31513 * 119.99942 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 120.00052 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.47041 * 59.98958 * 9 7 5 11 11 H 1.48495 * 109.47007 * 179.97438 * 9 7 5 12 12 H 1.48502 * 109.46670 * 299.99487 * 9 7 5 13 13 N 1.46905 * 109.46624 * 240.00001 * 2 1 3 14 14 C 1.48606 * 110.99927 * 311.50326 * 13 2 1 15 15 C 1.54511 * 104.60459 * 158.79092 * 14 13 2 16 16 H 1.08997 * 110.44866 * 95.12162 * 15 14 13 17 17 C 1.50701 * 110.35672 * 217.37483 * 15 14 13 18 18 C 1.39866 * 126.04227 * 55.14737 * 17 15 14 19 19 N 1.30837 * 108.20630 * 179.82085 * 18 17 15 20 20 N 1.40087 * 108.20209 * 0.44056 * 19 18 17 21 21 C 1.46496 * 126.03622 * 179.69955 * 20 19 18 22 22 C 1.34946 * 107.92304 * 359.71555 * 20 19 18 23 23 C 1.53759 * 104.88061 * 336.22170 * 15 14 13 24 24 C 1.48661 * 110.99951 * 67.01877 * 13 2 1 25 25 C 1.52594 * 110.25042 * 119.08626 * 23 15 14 26 26 C 1.53190 * 109.19603 * 177.67721 * 25 23 15 27 27 O 1.42915 * 109.35112 * 303.29561 * 26 25 23 28 28 C 1.42916 * 114.20278 * 61.60585 * 27 26 25 29 29 C 1.52604 * 110.25685 * 241.18980 * 23 15 14 30 30 H 1.09004 * 109.47095 * 307.94430 * 1 2 3 31 31 H 1.09003 * 109.47520 * 67.94088 * 1 2 3 32 32 H 1.09000 * 109.47528 * 187.94609 * 1 2 3 33 33 H 1.09003 * 109.46995 * 304.99346 * 4 2 1 34 34 H 1.09002 * 109.47336 * 64.99796 * 4 2 1 35 35 H 0.97001 * 120.00312 * 180.02562 * 8 7 5 36 36 H 1.08998 * 110.41275 * 277.56747 * 14 13 2 37 37 H 1.08997 * 110.40884 * 40.00838 * 14 13 2 38 38 H 1.08011 * 125.90008 * 0.02562 * 18 17 15 39 39 H 1.08999 * 109.47131 * 270.02177 * 21 20 19 40 40 H 1.09002 * 109.47368 * 30.02363 * 21 20 19 41 41 H 1.09006 * 109.46981 * 150.02384 * 21 20 19 42 42 H 1.08004 * 126.12660 * 179.97438 * 22 20 19 43 43 H 1.09003 * 110.43305 * 320.10983 * 24 13 2 44 44 H 1.08996 * 110.43553 * 82.61116 * 24 13 2 45 45 H 1.09006 * 109.51460 * 297.58836 * 25 23 15 46 46 H 1.08995 * 109.52266 * 57.76140 * 25 23 15 47 47 H 1.09002 * 109.49340 * 183.33580 * 26 25 23 48 48 H 1.09005 * 109.49644 * 63.25669 * 26 25 23 49 49 H 1.08998 * 109.49294 * 178.43921 * 28 27 26 50 50 H 1.08997 * 109.51104 * 58.37409 * 28 27 26 51 51 H 1.08992 * 109.51804 * 302.24882 * 29 23 15 52 52 H 1.08999 * 109.51054 * 62.41766 * 29 23 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5419 -0.6150 1.3126 6 1 4.0789 -0.0862 0.5391 7 6 4.2305 -1.1937 2.3577 8 7 3.5765 -1.8380 3.2993 9 14 6.0921 -1.0613 2.4367 10 1 6.4844 0.3697 2.4970 11 1 6.5871 -1.7615 3.6491 12 1 6.6845 -1.6864 1.2270 13 7 2.0196 -0.6925 -1.1995 14 6 1.3302 -1.9966 -1.3802 15 6 1.5133 -2.3299 -2.8777 16 1 2.3784 -2.9773 -3.0208 17 6 0.2720 -2.9868 -3.4242 18 6 -1.0259 -2.4685 -3.3684 19 7 -1.8316 -3.3204 -3.9489 20 7 -1.0721 -4.4141 -4.3842 21 6 -1.5849 -5.5976 -5.0788 22 6 0.2152 -4.1850 -4.0503 23 6 1.7436 -0.9710 -3.5594 24 6 1.6862 0.0726 -2.4297 25 6 3.1130 -0.9429 -4.2321 26 6 3.2933 0.3975 -4.9516 27 8 2.2259 0.5819 -5.8839 28 6 0.9283 0.6303 -5.2870 29 6 0.6439 -0.6999 -4.5821 30 1 -0.3633 0.6319 0.8105 31 1 -0.3634 0.3860 -0.9524 32 1 -0.3634 -1.0178 0.1421 33 1 1.6055 -0.2617 2.1370 34 1 1.7516 -1.7716 1.2055 35 1 4.0608 -2.2448 4.0348 36 1 1.7970 -2.7623 -0.7606 37 1 0.2716 -1.9036 -1.1381 38 1 -1.3130 -1.5260 -2.9258 39 1 -1.8638 -6.3559 -4.3471 40 1 -2.4594 -5.3225 -5.6684 41 1 -0.8128 -5.9952 -5.7376 42 1 1.0505 -4.8408 -4.2471 43 1 0.6851 0.4970 -2.3543 44 1 2.4219 0.8586 -2.6001 45 1 3.8915 -1.0591 -3.4781 46 1 3.1805 -1.7560 -4.9549 47 1 4.2449 0.3999 -5.4831 48 1 3.2821 1.2067 -4.2213 49 1 0.1786 0.8000 -6.0597 50 1 0.8919 1.4419 -4.5604 51 1 0.6238 -1.5044 -5.3172 52 1 -0.3193 -0.6446 -4.0750 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000516185463.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:19:46 Heat of formation + Delta-G solvation = 45.534230 kcal Electronic energy + Delta-G solvation = -31081.288031 eV Core-core repulsion = 27275.786477 eV Total energy + Delta-G solvation = -3805.501554 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.65714 -40.07715 -37.88839 -35.18169 -33.29175 -32.51488 -31.36913 -31.12313 -30.25264 -28.41733 -27.30519 -26.27382 -25.83893 -23.76243 -23.52748 -22.50098 -22.04702 -20.94233 -19.90224 -18.61624 -18.42034 -16.83603 -16.18228 -15.98281 -15.92016 -15.48198 -15.37485 -15.10369 -14.70317 -14.37738 -14.19073 -13.95864 -13.72545 -13.45730 -13.11137 -12.92426 -12.88877 -12.79969 -12.37056 -12.15910 -11.94895 -11.76549 -11.63390 -11.34886 -11.26913 -11.14223 -10.99863 -10.81485 -10.71764 -10.63980 -10.55347 -10.39185 -10.03387 -10.00009 -9.79852 -9.45982 -9.24773 -9.13710 -8.97481 -8.25185 -8.22973 -7.54196 -5.85635 -3.83285 1.86610 2.47257 2.79045 3.42352 3.46129 3.49547 3.94351 4.34236 4.58089 4.61146 4.68507 4.81828 4.86277 4.92739 4.98994 5.04722 5.12890 5.16897 5.28547 5.31590 5.39286 5.47685 5.51373 5.52316 5.64167 5.68696 5.72760 5.75171 5.81962 5.84166 5.90836 5.93316 6.00660 6.04533 6.11318 6.17575 6.29524 6.38230 6.44026 6.46616 6.54424 6.65066 6.66854 6.77229 6.96893 7.02111 7.26084 7.51608 7.62068 7.67103 7.86060 8.03268 8.15373 8.61611 9.22324 9.78103 11.26370 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.011027 B = 0.004038 C = 0.003468 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2538.700799 B = 6933.272294 C = 8071.146956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.076 3.924 3 H 0.068 0.932 4 C 0.034 3.966 5 C -0.489 4.489 6 H 0.059 0.941 7 C 0.051 3.949 8 N -0.904 5.904 9 Si 0.889 3.111 10 H -0.280 1.280 11 H -0.291 1.291 12 H -0.278 1.278 13 N -0.476 5.476 14 C 0.041 3.959 15 C -0.006 4.006 16 H 0.082 0.918 17 C -0.209 4.209 18 C 0.059 3.941 19 N -0.301 5.301 20 N -0.382 5.382 21 C 0.105 3.895 22 C 0.051 3.949 23 C -0.050 4.050 24 C 0.030 3.970 25 C -0.136 4.136 26 C 0.059 3.941 27 O -0.388 6.388 28 C 0.059 3.941 29 C -0.137 4.137 30 H 0.054 0.946 31 H 0.042 0.958 32 H 0.056 0.944 33 H 0.016 0.984 34 H 0.017 0.983 35 H 0.257 0.743 36 H 0.083 0.917 37 H 0.049 0.951 38 H 0.178 0.822 39 H 0.072 0.928 40 H 0.085 0.915 41 H 0.084 0.916 42 H 0.171 0.829 43 H 0.040 0.960 44 H 0.074 0.926 45 H 0.086 0.914 46 H 0.065 0.935 47 H 0.089 0.911 48 H 0.054 0.946 49 H 0.085 0.915 50 H 0.049 0.951 51 H 0.068 0.932 52 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.241 -2.738 -19.149 21.026 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C -0.033 4.033 3 H 0.086 0.914 4 C -0.003 4.003 5 C -0.528 4.528 6 H 0.078 0.922 7 C -0.148 4.148 8 N -0.545 5.545 9 Si 0.717 3.283 10 H -0.205 1.205 11 H -0.217 1.217 12 H -0.204 1.204 13 N -0.199 5.199 14 C -0.087 4.087 15 C -0.027 4.027 16 H 0.101 0.899 17 C -0.221 4.221 18 C -0.127 4.127 19 N -0.123 5.123 20 N -0.165 5.165 21 C -0.037 4.037 22 C -0.094 4.094 23 C -0.050 4.050 24 C -0.098 4.098 25 C -0.173 4.173 26 C -0.017 4.017 27 O -0.307 6.307 28 C -0.018 4.018 29 C -0.175 4.175 30 H 0.073 0.927 31 H 0.061 0.939 32 H 0.075 0.925 33 H 0.034 0.966 34 H 0.035 0.965 35 H 0.067 0.933 36 H 0.101 0.899 37 H 0.067 0.933 38 H 0.194 0.806 39 H 0.090 0.910 40 H 0.104 0.896 41 H 0.103 0.897 42 H 0.188 0.812 43 H 0.058 0.942 44 H 0.092 0.908 45 H 0.104 0.896 46 H 0.083 0.917 47 H 0.107 0.893 48 H 0.072 0.928 49 H 0.104 0.896 50 H 0.067 0.933 51 H 0.087 0.913 52 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -8.857 -3.278 -19.511 21.677 hybrid contribution 0.918 0.122 0.682 1.150 sum -7.938 -3.156 -18.830 20.677 Atomic orbital electron populations 1.22541 0.99832 1.01637 1.00404 1.22029 0.90100 0.98520 0.92618 0.91353 1.19110 0.96260 0.95259 0.89662 1.21130 0.91818 1.32911 1.06899 0.92233 1.24994 0.97888 0.95919 0.96025 1.69954 1.35252 1.36969 1.12363 0.86714 0.86530 0.77967 0.77055 1.20546 1.21728 1.20372 1.65661 1.52031 1.01803 1.00372 1.23232 0.97708 0.93883 0.93911 1.20243 0.93385 0.94523 0.94522 0.89948 1.19974 0.95730 0.96739 1.09617 1.23682 0.91410 0.98764 0.98830 1.77331 1.19596 0.96147 1.19193 1.48339 1.05323 1.16499 1.46341 1.21781 1.01124 0.84107 0.96668 1.22287 0.87953 0.98423 1.00715 1.20846 0.94710 0.95151 0.94325 1.23313 0.99208 0.96365 0.90881 1.22101 0.97482 0.97875 0.99877 1.22670 0.90052 0.96642 0.92366 1.87870 1.14859 1.93648 1.34314 1.22645 0.84906 0.96781 0.97457 1.22424 0.98938 0.97787 0.98343 0.92678 0.93923 0.92491 0.96553 0.96456 0.93331 0.89859 0.93338 0.80563 0.90993 0.89590 0.89732 0.81220 0.94183 0.90792 0.89575 0.91659 0.89266 0.92817 0.89648 0.93278 0.91311 0.90521 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.09 8.17 37.16 0.30 -2.79 16 2 C 0.08 1.50 2.29 -67.71 -0.16 1.35 16 3 H 0.07 1.39 8.12 -51.93 -0.42 0.97 16 4 C 0.03 0.86 4.46 -27.88 -0.12 0.74 16 5 C -0.49 -13.56 8.84 -34.44 -0.30 -13.87 16 6 H 0.06 1.64 7.74 -52.49 -0.41 1.24 16 7 C 0.05 1.46 5.46 -17.82 -0.10 1.36 16 8 N -0.90 -27.22 13.29 55.43 0.74 -26.49 16 9 Si 0.89 21.95 29.54 -169.99 -5.02 16.93 16 10 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 11 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 12 H -0.28 -6.78 7.11 56.52 0.40 -6.37 16 13 N -0.48 -8.56 5.06 -222.12 -1.12 -9.68 16 14 C 0.04 0.68 5.05 -2.09 -0.01 0.67 16 15 C -0.01 -0.09 3.12 -90.58 -0.28 -0.37 16 16 H 0.08 1.12 7.68 -51.93 -0.40 0.72 16 17 C -0.21 -2.60 3.51 -105.06 -0.37 -2.97 16 18 C 0.06 0.76 8.70 -17.37 -0.15 0.61 16 19 N -0.30 -4.04 12.58 30.63 0.39 -3.66 16 20 N -0.38 -4.25 4.01 -68.16 -0.27 -4.52 16 21 C 0.10 0.70 11.47 59.84 0.69 1.39 16 22 C 0.05 0.56 11.39 -17.22 -0.20 0.37 16 23 C -0.05 -0.63 0.68 -154.06 -0.11 -0.73 16 24 C 0.03 0.44 4.41 -2.38 -0.01 0.43 16 25 C -0.14 -1.68 4.67 -26.84 -0.13 -1.80 16 26 C 0.06 0.70 6.64 37.26 0.25 0.95 16 27 O -0.39 -5.02 10.75 -35.23 -0.38 -5.40 16 28 C 0.06 0.66 6.65 37.26 0.25 0.91 16 29 C -0.14 -1.58 3.34 -26.83 -0.09 -1.67 16 30 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 31 H 0.04 0.62 6.09 -51.93 -0.32 0.30 16 32 H 0.06 0.97 6.40 -51.93 -0.33 0.64 16 33 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.02 0.46 7.13 -51.93 -0.37 0.09 16 35 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 36 H 0.08 1.61 7.68 -51.93 -0.40 1.21 16 37 H 0.05 0.79 4.54 -51.93 -0.24 0.56 16 38 H 0.18 2.10 7.04 -52.48 -0.37 1.73 16 39 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 40 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 41 H 0.08 0.37 8.14 -51.93 -0.42 -0.06 16 42 H 0.17 1.40 8.06 -52.48 -0.42 0.98 16 43 H 0.04 0.56 5.60 -51.93 -0.29 0.27 16 44 H 0.07 1.10 6.17 -51.93 -0.32 0.78 16 45 H 0.09 1.17 8.14 -51.93 -0.42 0.75 16 46 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 47 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 48 H 0.05 0.64 6.52 -51.93 -0.34 0.30 16 49 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 50 H 0.05 0.54 7.54 -51.93 -0.39 0.15 16 51 H 0.07 0.86 7.40 -51.93 -0.38 0.48 16 52 H 0.08 0.87 4.84 -51.93 -0.25 0.62 16 LS Contribution 385.54 15.07 5.81 5.81 Total: -1.00 -32.32 385.54 -8.99 -41.31 By element: Atomic # 1 Polarization: 9.72 SS G_CDS: -8.59 Total: 1.13 kcal Atomic # 6 Polarization: -14.90 SS G_CDS: -0.54 Total: -15.44 kcal Atomic # 7 Polarization: -44.07 SS G_CDS: -0.28 Total: -44.35 kcal Atomic # 8 Polarization: -5.02 SS G_CDS: -0.38 Total: -5.40 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.93 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -32.32 -8.99 -41.31 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000516185463.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.841 kcal (2) G-P(sol) polarization free energy of solvation -32.315 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.526 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.992 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.307 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds