Wall clock time and date at job start Tue Mar 31 2020 17:19:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08999 * 109.47041 * 2 1 4 4 C 1.53001 * 109.47120 * 120.00300 * 2 1 3 5 5 C 1.50698 * 109.46931 * 184.99896 * 4 2 1 6 6 H 1.07995 * 120.00048 * 359.97438 * 5 4 2 7 7 C 1.37882 * 119.99884 * 180.02562 * 5 4 2 8 8 N 1.31513 * 119.99942 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 120.00052 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.47041 * 59.98958 * 9 7 5 11 11 H 1.48495 * 109.47007 * 179.97438 * 9 7 5 12 12 H 1.48502 * 109.46670 * 299.99487 * 9 7 5 13 13 N 1.46905 * 109.46624 * 240.00001 * 2 1 3 14 14 C 1.48606 * 110.99927 * 311.50326 * 13 2 1 15 15 C 1.54511 * 104.60459 * 158.79092 * 14 13 2 16 16 H 1.08997 * 110.44866 * 95.12162 * 15 14 13 17 17 C 1.50701 * 110.35672 * 217.37483 * 15 14 13 18 18 C 1.39866 * 126.04227 * 55.14737 * 17 15 14 19 19 N 1.30837 * 108.20630 * 179.82085 * 18 17 15 20 20 N 1.40087 * 108.20209 * 0.44056 * 19 18 17 21 21 C 1.46496 * 126.03622 * 179.69955 * 20 19 18 22 22 C 1.34946 * 107.92304 * 359.71555 * 20 19 18 23 23 C 1.53759 * 104.88061 * 336.22170 * 15 14 13 24 24 C 1.48661 * 110.99951 * 67.01877 * 13 2 1 25 25 C 1.52594 * 110.25042 * 119.08626 * 23 15 14 26 26 C 1.53190 * 109.19603 * 177.67721 * 25 23 15 27 27 O 1.42915 * 109.35112 * 303.29561 * 26 25 23 28 28 C 1.42916 * 114.20278 * 61.60585 * 27 26 25 29 29 C 1.52604 * 110.25685 * 241.18980 * 23 15 14 30 30 H 1.09004 * 109.47095 * 307.94430 * 1 2 3 31 31 H 1.09003 * 109.47520 * 67.94088 * 1 2 3 32 32 H 1.09000 * 109.47528 * 187.94609 * 1 2 3 33 33 H 1.09003 * 109.46995 * 304.99346 * 4 2 1 34 34 H 1.09002 * 109.47336 * 64.99796 * 4 2 1 35 35 H 0.97001 * 120.00312 * 180.02562 * 8 7 5 36 36 H 1.08998 * 110.41275 * 277.56747 * 14 13 2 37 37 H 1.08997 * 110.40884 * 40.00838 * 14 13 2 38 38 H 1.08011 * 125.90008 * 0.02562 * 18 17 15 39 39 H 1.08999 * 109.47131 * 270.02177 * 21 20 19 40 40 H 1.09002 * 109.47368 * 30.02363 * 21 20 19 41 41 H 1.09006 * 109.46981 * 150.02384 * 21 20 19 42 42 H 1.08004 * 126.12660 * 179.97438 * 22 20 19 43 43 H 1.09003 * 110.43305 * 320.10983 * 24 13 2 44 44 H 1.08996 * 110.43553 * 82.61116 * 24 13 2 45 45 H 1.09006 * 109.51460 * 297.58836 * 25 23 15 46 46 H 1.08995 * 109.52266 * 57.76140 * 25 23 15 47 47 H 1.09002 * 109.49340 * 183.33580 * 26 25 23 48 48 H 1.09005 * 109.49644 * 63.25669 * 26 25 23 49 49 H 1.08998 * 109.49294 * 178.43921 * 28 27 26 50 50 H 1.08997 * 109.51104 * 58.37409 * 28 27 26 51 51 H 1.08992 * 109.51804 * 302.24882 * 29 23 15 52 52 H 1.08999 * 109.51054 * 62.41766 * 29 23 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5419 -0.6150 1.3126 6 1 4.0789 -0.0862 0.5391 7 6 4.2305 -1.1937 2.3577 8 7 3.5765 -1.8380 3.2993 9 14 6.0921 -1.0613 2.4367 10 1 6.4844 0.3697 2.4970 11 1 6.5871 -1.7615 3.6491 12 1 6.6845 -1.6864 1.2270 13 7 2.0196 -0.6925 -1.1995 14 6 1.3302 -1.9966 -1.3802 15 6 1.5133 -2.3299 -2.8777 16 1 2.3784 -2.9773 -3.0208 17 6 0.2720 -2.9868 -3.4242 18 6 -1.0259 -2.4685 -3.3684 19 7 -1.8316 -3.3204 -3.9489 20 7 -1.0721 -4.4141 -4.3842 21 6 -1.5849 -5.5976 -5.0788 22 6 0.2152 -4.1850 -4.0503 23 6 1.7436 -0.9710 -3.5594 24 6 1.6862 0.0726 -2.4297 25 6 3.1130 -0.9429 -4.2321 26 6 3.2933 0.3975 -4.9516 27 8 2.2259 0.5819 -5.8839 28 6 0.9283 0.6303 -5.2870 29 6 0.6439 -0.6999 -4.5821 30 1 -0.3633 0.6319 0.8105 31 1 -0.3634 0.3860 -0.9524 32 1 -0.3634 -1.0178 0.1421 33 1 1.6055 -0.2617 2.1370 34 1 1.7516 -1.7716 1.2055 35 1 4.0608 -2.2448 4.0348 36 1 1.7970 -2.7623 -0.7606 37 1 0.2716 -1.9036 -1.1381 38 1 -1.3130 -1.5260 -2.9258 39 1 -1.8638 -6.3559 -4.3471 40 1 -2.4594 -5.3225 -5.6684 41 1 -0.8128 -5.9952 -5.7376 42 1 1.0505 -4.8408 -4.2471 43 1 0.6851 0.4970 -2.3543 44 1 2.4219 0.8586 -2.6001 45 1 3.8915 -1.0591 -3.4781 46 1 3.1805 -1.7560 -4.9549 47 1 4.2449 0.3999 -5.4831 48 1 3.2821 1.2067 -4.2213 49 1 0.1786 0.8000 -6.0597 50 1 0.8919 1.4419 -4.5604 51 1 0.6238 -1.5044 -5.3172 52 1 -0.3193 -0.6446 -4.0750 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000516185463.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:19:45 Heat of formation + Delta-G solvation = 24.536316 kcal Electronic energy + Delta-G solvation = -31082.198569 eV Core-core repulsion = 27275.786477 eV Total energy + Delta-G solvation = -3806.412092 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.61737 -41.10901 -39.08370 -36.51419 -34.65016 -34.01141 -32.43594 -32.06618 -31.64110 -29.51582 -29.03654 -27.23038 -26.90949 -25.35432 -24.51520 -23.96927 -23.24378 -21.80866 -20.93079 -20.11421 -19.46708 -18.30691 -17.76788 -16.99421 -16.89440 -16.65067 -16.43306 -16.31899 -16.11778 -15.61988 -15.17397 -15.10704 -14.88858 -14.72417 -14.39177 -13.96432 -13.84696 -13.76597 -13.57486 -13.53795 -13.25389 -13.23179 -12.90180 -12.70887 -12.60450 -12.48331 -12.38708 -12.25630 -12.12605 -12.07681 -11.74292 -11.70748 -11.59475 -11.11197 -11.07915 -10.95641 -10.90873 -10.45084 -10.37692 -10.15836 -9.17696 -8.94317 -8.06855 -6.11660 1.00119 1.43570 1.46298 1.53608 1.74628 1.84072 2.49832 3.05051 3.20663 3.32031 3.58391 3.69714 3.83136 3.92373 4.04268 4.19341 4.22447 4.29626 4.31137 4.35010 4.38439 4.41283 4.46586 4.47611 4.55106 4.58720 4.66050 4.71049 4.71884 4.77916 4.82907 4.85338 4.89751 4.91340 4.99872 5.10298 5.14971 5.22050 5.23511 5.27873 5.33708 5.40131 5.43600 5.49738 5.53718 5.70848 5.74326 5.92007 6.19522 6.27994 6.35069 6.36312 6.55542 6.77602 7.02224 7.54119 9.05128 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.011027 B = 0.004038 C = 0.003468 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2538.700799 B = 6933.272294 C = 8071.146956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.084 3.916 3 H 0.063 0.937 4 C 0.042 3.958 5 C -0.498 4.498 6 H 0.059 0.941 7 C -0.005 4.005 8 N -0.942 5.942 9 Si 0.955 3.045 10 H -0.270 1.270 11 H -0.289 1.289 12 H -0.270 1.270 13 N -0.498 5.498 14 C 0.045 3.955 15 C 0.007 3.993 16 H 0.080 0.920 17 C -0.227 4.227 18 C 0.054 3.946 19 N -0.330 5.330 20 N -0.381 5.381 21 C 0.095 3.905 22 C 0.058 3.942 23 C -0.042 4.042 24 C 0.036 3.964 25 C -0.132 4.132 26 C 0.060 3.940 27 O -0.400 6.400 28 C 0.056 3.944 29 C -0.124 4.124 30 H 0.056 0.944 31 H 0.071 0.929 32 H 0.049 0.951 33 H -0.012 1.012 34 H -0.010 1.010 35 H 0.257 0.743 36 H 0.045 0.955 37 H 0.051 0.949 38 H 0.180 0.820 39 H 0.080 0.920 40 H 0.090 0.910 41 H 0.113 0.887 42 H 0.199 0.801 43 H 0.051 0.949 44 H 0.073 0.927 45 H 0.070 0.930 46 H 0.072 0.928 47 H 0.103 0.897 48 H 0.051 0.949 49 H 0.100 0.900 50 H 0.053 0.947 51 H 0.063 0.937 52 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.039 -2.752 -21.612 23.222 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.024 4.024 3 H 0.081 0.919 4 C 0.005 3.995 5 C -0.536 4.536 6 H 0.077 0.923 7 C -0.201 4.201 8 N -0.584 5.584 9 Si 0.781 3.219 10 H -0.195 1.195 11 H -0.215 1.215 12 H -0.195 1.195 13 N -0.221 5.221 14 C -0.083 4.083 15 C -0.014 4.014 16 H 0.098 0.902 17 C -0.239 4.239 18 C -0.132 4.132 19 N -0.152 5.152 20 N -0.163 5.163 21 C -0.045 4.045 22 C -0.088 4.088 23 C -0.043 4.043 24 C -0.092 4.092 25 C -0.170 4.170 26 C -0.016 4.016 27 O -0.319 6.319 28 C -0.020 4.020 29 C -0.162 4.162 30 H 0.076 0.924 31 H 0.089 0.911 32 H 0.068 0.932 33 H 0.006 0.994 34 H 0.008 0.992 35 H 0.066 0.934 36 H 0.064 0.936 37 H 0.069 0.931 38 H 0.197 0.803 39 H 0.099 0.901 40 H 0.109 0.891 41 H 0.131 0.869 42 H 0.215 0.785 43 H 0.069 0.931 44 H 0.091 0.909 45 H 0.089 0.911 46 H 0.091 0.909 47 H 0.121 0.879 48 H 0.069 0.931 49 H 0.119 0.881 50 H 0.071 0.929 51 H 0.082 0.918 52 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -8.673 -3.287 -21.998 23.874 hybrid contribution 0.825 0.055 1.444 1.664 sum -7.848 -3.233 -20.555 22.238 Atomic orbital electron populations 1.22400 0.97327 1.01516 1.02086 1.21701 0.92075 0.97328 0.91331 0.91851 1.18943 0.95225 0.93966 0.91395 1.21464 0.93210 1.32308 1.06626 0.92277 1.25846 1.02807 0.95657 0.95740 1.70096 1.37135 1.38098 1.13075 0.85647 0.80691 0.78355 0.77182 1.19515 1.21515 1.19535 1.65502 1.52906 1.02694 1.00972 1.23116 0.97071 0.92352 0.95722 1.20048 0.94059 0.95110 0.92153 0.90162 1.19870 0.95077 0.97750 1.11193 1.23756 0.91494 0.99034 0.98881 1.77276 1.20570 0.97184 1.20155 1.48690 1.05225 1.16749 1.45677 1.22140 1.02357 0.82824 0.97165 1.22723 0.88724 0.98050 0.99298 1.20781 0.95622 0.93913 0.93966 1.23327 0.99672 0.96484 0.89716 1.22050 0.96617 0.98700 0.99602 1.22702 0.90560 0.95981 0.92370 1.87862 1.15488 1.93642 1.34878 1.22769 0.84690 0.96535 0.98055 1.22289 0.98413 0.97816 0.97634 0.92449 0.91060 0.93171 0.99398 0.99162 0.93386 0.93642 0.93145 0.80274 0.90114 0.89130 0.86871 0.78468 0.93101 0.90864 0.91103 0.90910 0.87897 0.93062 0.88146 0.92889 0.91835 0.90137 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.78 8.17 71.98 0.59 -5.20 16 2 C 0.08 3.41 2.29 44.92 0.10 3.51 16 3 H 0.06 2.60 8.12 -2.39 -0.02 2.58 16 4 C 0.04 2.20 4.46 29.85 0.13 2.33 16 5 C -0.50 -28.31 8.84 25.60 0.23 -28.08 16 6 H 0.06 3.30 7.74 -2.91 -0.02 3.28 16 7 C 0.00 -0.28 5.46 84.66 0.46 0.19 16 8 N -0.94 -58.32 13.29 21.45 0.28 -58.03 16 9 Si 0.96 45.50 29.54 68.60 2.03 47.53 16 10 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16 11 H -0.29 -13.60 7.11 99.48 0.71 -12.90 16 12 H -0.27 -12.45 7.11 99.48 0.71 -11.74 16 13 N -0.50 -18.05 5.06 -856.64 -4.34 -22.39 16 14 C 0.05 1.55 5.05 86.49 0.44 1.98 16 15 C 0.01 0.17 3.12 -10.77 -0.03 0.14 16 16 H 0.08 2.13 7.68 -2.39 -0.02 2.11 16 17 C -0.23 -5.37 3.51 -20.15 -0.07 -5.44 16 18 C 0.05 1.31 8.70 85.24 0.74 2.05 16 19 N -0.33 -8.40 12.58 -57.02 -0.72 -9.12 16 20 N -0.38 -7.66 4.01 -369.57 -1.48 -9.15 16 21 C 0.10 1.03 11.47 127.77 1.47 2.50 16 22 C 0.06 1.16 11.39 83.54 0.95 2.11 16 23 C -0.04 -1.01 0.68 -51.89 -0.04 -1.05 16 24 C 0.04 0.99 4.41 86.27 0.38 1.37 16 25 C -0.13 -3.07 4.67 30.52 0.14 -2.93 16 26 C 0.06 1.31 6.64 72.05 0.48 1.79 16 27 O -0.40 -9.40 10.75 -148.98 -1.60 -11.00 16 28 C 0.06 1.13 6.65 72.05 0.48 1.61 16 29 C -0.12 -2.60 3.34 30.53 0.10 -2.50 16 30 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 31 H 0.07 1.94 6.09 -2.39 -0.01 1.93 16 32 H 0.05 1.72 6.40 -2.39 -0.02 1.71 16 33 H -0.01 -0.70 8.14 -2.39 -0.02 -0.72 16 34 H -0.01 -0.57 7.13 -2.39 -0.02 -0.59 16 35 H 0.26 15.17 8.31 -92.71 -0.77 14.40 16 36 H 0.04 1.86 7.68 -2.39 -0.02 1.84 16 37 H 0.05 1.68 4.54 -2.39 -0.01 1.67 16 38 H 0.18 4.06 7.04 -2.90 -0.02 4.04 16 39 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 40 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 41 H 0.11 0.58 8.14 -2.38 -0.02 0.56 16 42 H 0.20 2.67 8.06 -2.91 -0.02 2.64 16 43 H 0.05 1.32 5.60 -2.39 -0.01 1.30 16 44 H 0.07 2.08 6.17 -2.39 -0.01 2.06 16 45 H 0.07 1.88 8.14 -2.38 -0.02 1.86 16 46 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 47 H 0.10 1.94 8.14 -2.39 -0.02 1.92 16 48 H 0.05 1.14 6.52 -2.38 -0.02 1.12 16 49 H 0.10 1.73 8.14 -2.39 -0.02 1.71 16 50 H 0.05 1.03 7.54 -2.39 -0.02 1.01 16 51 H 0.06 1.44 7.40 -2.39 -0.02 1.43 16 52 H 0.08 1.66 4.84 -2.39 -0.01 1.65 16 Total: -1.00 -71.12 385.54 1.63 -69.50 By element: Atomic # 1 Polarization: 17.36 SS G_CDS: 0.90 Total: 18.27 kcal Atomic # 6 Polarization: -32.16 SS G_CDS: 6.55 Total: -25.60 kcal Atomic # 7 Polarization: -92.43 SS G_CDS: -6.25 Total: -98.68 kcal Atomic # 8 Polarization: -9.40 SS G_CDS: -1.60 Total: -11.00 kcal Atomic # 14 Polarization: 45.50 SS G_CDS: 2.03 Total: 47.53 kcal Total: -71.12 1.63 -69.50 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000516185463.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.033 kcal (2) G-P(sol) polarization free energy of solvation -71.124 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.910 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.627 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.497 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.536 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds