Wall clock time and date at job start Tue Mar 31 2020 17:55:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08998 * 109.47588 * 2 1 4 4 C 1.50703 * 109.47277 * 120.00282 * 2 1 3 5 5 O 1.21286 * 120.00028 * 106.59274 * 4 2 1 6 6 N 1.34775 * 119.99949 * 286.59643 * 4 2 1 7 7 C 1.46505 * 119.99883 * 179.97438 * 6 4 2 8 8 C 1.47199 * 109.47251 * 59.99969 * 7 6 4 9 9 N 4.99257 * 133.64630 * 111.27111 * 2 1 3 10 10 C 1.53006 * 109.46889 * 299.99912 * 7 6 4 11 11 C 1.53004 * 109.46609 * 179.97438 * 10 7 6 12 12 C 1.53001 * 109.46919 * 60.00121 * 11 10 7 13 13 C 1.52999 * 109.47497 * 299.99662 * 12 11 10 14 14 C 1.53001 * 109.46820 * 179.97438 * 7 6 4 15 15 N 1.46899 * 109.47045 * 240.00058 * 2 1 3 16 16 C 1.46845 * 111.00105 * 76.51237 * 15 2 1 17 17 C 1.53035 * 109.52806 * 174.16070 * 16 15 2 18 18 C 1.53123 * 109.27767 * 59.17884 * 17 16 15 19 19 C 1.50697 * 109.52087 * 182.44462 * 18 17 16 20 20 H 1.07997 * 120.00067 * 119.68607 * 19 18 17 21 21 C 1.37881 * 119.99823 * 299.67564 * 19 18 17 22 22 N 1.31511 * 120.00021 * 0.02562 * 21 19 18 23 23 Si 1.86797 * 119.99674 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.47421 * 90.00692 * 23 21 19 25 25 H 1.48505 * 109.46968 * 210.00281 * 23 21 19 26 26 H 1.48501 * 109.47584 * 329.99990 * 23 21 19 27 27 C 1.53117 * 109.15635 * 302.34568 * 18 17 16 28 28 C 1.46849 * 111.00138 * 312.30105 * 15 2 1 29 29 H 1.08995 * 109.47252 * 59.99575 * 1 2 3 30 30 H 1.08997 * 109.47014 * 299.99708 * 1 2 3 31 31 H 1.09006 * 109.47350 * 179.97438 * 1 2 3 32 32 H 0.96993 * 120.00069 * 359.97438 * 6 4 2 33 33 H 1.08999 * 109.47000 * 300.00029 * 10 7 6 34 34 H 1.09000 * 109.46914 * 60.00280 * 10 7 6 35 35 H 1.08995 * 109.47534 * 300.00283 * 11 10 7 36 36 H 1.09005 * 109.46659 * 179.97438 * 11 10 7 37 37 H 1.09003 * 109.46873 * 179.97438 * 12 11 10 38 38 H 1.09007 * 109.47449 * 60.00196 * 12 11 10 39 39 H 1.08999 * 109.46732 * 300.00233 * 13 12 11 40 40 H 1.09000 * 109.47431 * 180.02562 * 13 12 11 41 41 H 1.08998 * 109.47202 * 299.99899 * 14 7 6 42 42 H 1.09004 * 109.46751 * 60.00235 * 14 7 6 43 43 H 1.09006 * 109.46109 * 294.18007 * 16 15 2 44 44 H 1.09002 * 109.46511 * 54.14053 * 16 15 2 45 45 H 1.09001 * 109.50394 * 299.24104 * 17 16 15 46 46 H 1.09000 * 109.53923 * 179.13783 * 17 16 15 47 47 H 1.09001 * 109.52288 * 62.24940 * 18 17 16 48 48 H 0.97003 * 119.99791 * 180.02562 * 22 21 19 49 49 H 1.08996 * 109.50764 * 297.71003 * 27 18 17 50 50 H 1.09011 * 109.50075 * 177.59704 * 27 18 17 51 51 H 1.08997 * 109.46314 * 305.85515 * 28 15 2 52 52 H 1.08998 * 109.46199 * 65.82468 * 28 15 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 1.2304 5 8 2.5173 -1.8181 1.1356 6 7 1.9426 -0.1151 2.4362 7 6 2.4305 -0.8060 3.6324 8 6 3.8668 -1.0915 3.4827 9 7 4.9758 -1.3106 3.3666 10 6 1.6654 -2.1190 3.8107 11 6 2.1754 -2.8408 5.0596 12 6 1.9576 -1.9529 6.2865 13 6 2.7226 -0.6399 6.1082 14 6 2.2128 0.0824 4.8589 15 7 2.0196 -0.6925 -1.1994 16 6 1.8935 0.1607 -2.3880 17 6 2.5437 -0.5332 -3.5870 18 6 1.8547 -1.8795 -3.8268 19 6 2.5299 -2.5944 -4.9687 20 1 2.9874 -3.5592 -4.8068 21 6 2.5632 -2.0169 -6.2203 22 7 2.0063 -0.8419 -6.4173 23 14 3.3994 -2.9034 -7.6359 24 1 2.4114 -3.7655 -8.3329 25 1 3.9464 -1.9060 -8.5906 26 1 4.5054 -3.7433 -7.1100 27 6 1.9584 -2.7300 -2.5578 28 6 1.3251 -1.9725 -1.3885 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 1.5551 0.7709 2.5120 33 1 0.6019 -1.9075 3.9215 34 1 1.8210 -2.7516 2.9368 35 1 3.2389 -3.0522 4.9484 36 1 1.6300 -3.7760 5.1869 37 1 2.3205 -2.4673 7.1763 38 1 0.8940 -1.7415 6.3979 39 1 3.7861 -0.8514 5.9969 40 1 2.5678 -0.0076 6.9824 41 1 2.7581 1.0176 4.7316 42 1 1.1492 0.2941 4.9699 43 1 0.8386 0.3368 -2.5984 44 1 2.3912 1.1132 -2.2058 45 1 3.6018 -0.6973 -3.3828 46 1 2.4368 0.0930 -4.4727 47 1 0.8051 -1.7134 -4.0692 48 1 2.0295 -0.4358 -7.2979 49 1 3.0072 -2.9286 -2.3374 50 1 1.4326 -3.6731 -2.7078 51 1 1.4100 -2.5693 -0.4805 52 1 0.2729 -1.7864 -1.6037 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000541019233.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:55:03 Heat of formation + Delta-G solvation = -41.924814 kcal Electronic energy + Delta-G solvation = -30069.147639 eV Core-core repulsion = 26259.853576 eV Total energy + Delta-G solvation = -3809.294063 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.82548 -40.30866 -38.85047 -36.86835 -36.06896 -35.36151 -33.78928 -31.82397 -31.63421 -31.17263 -29.89334 -27.48626 -25.66596 -24.40617 -23.90013 -23.81707 -23.09483 -21.85035 -20.84800 -20.04999 -18.52856 -18.42302 -18.03529 -17.25079 -16.73517 -16.39156 -16.23051 -15.60721 -15.57264 -15.41519 -15.28459 -14.90834 -14.72558 -14.50776 -14.26237 -14.20852 -14.03363 -13.90933 -13.59226 -13.32832 -13.18280 -13.10114 -13.06852 -12.96769 -12.82564 -12.70791 -12.70374 -12.45585 -12.23450 -12.09013 -12.00004 -11.72730 -11.59764 -11.44935 -11.36890 -11.25984 -10.94719 -10.67241 -10.46111 -10.31429 -10.27960 -9.07185 -8.09431 -6.21718 1.36620 1.38020 1.39050 1.49536 1.63918 1.72858 2.25880 2.42371 2.85285 3.11725 3.17230 3.59343 3.66906 3.80165 4.05363 4.09543 4.12850 4.21377 4.22191 4.29536 4.36464 4.44675 4.46089 4.52332 4.58813 4.70528 4.72414 4.79339 4.85598 4.87882 4.93722 4.95216 4.98048 5.13296 5.15458 5.17710 5.19592 5.23656 5.28285 5.32911 5.34436 5.38429 5.41009 5.51442 5.55190 5.61742 5.99945 6.02797 6.25449 6.32641 6.42006 6.48889 6.61695 6.87933 7.28926 7.45075 8.95053 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.024976 B = 0.002532 C = 0.002458 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1120.816142 B =11057.388965 C =11387.225692 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.062 3.938 3 H 0.126 0.874 4 C 0.522 3.478 5 O -0.549 6.549 6 N -0.706 5.706 7 C 0.279 3.721 8 C 0.226 3.774 9 N -0.483 5.483 10 C -0.124 4.124 11 C -0.123 4.123 12 C -0.116 4.116 13 C -0.122 4.122 14 C -0.111 4.111 15 N -0.536 5.536 16 C 0.072 3.928 17 C -0.096 4.096 18 C 0.048 3.952 19 C -0.537 4.537 20 H 0.042 0.958 21 C 0.016 3.984 22 N -0.913 5.913 23 Si 0.950 3.050 24 H -0.273 1.273 25 H -0.279 1.279 26 H -0.276 1.276 27 C -0.099 4.099 28 C 0.073 3.927 29 H 0.066 0.934 30 H 0.106 0.894 31 H 0.054 0.946 32 H 0.429 0.571 33 H 0.116 0.884 34 H 0.056 0.944 35 H 0.029 0.971 36 H 0.079 0.921 37 H 0.068 0.932 38 H 0.095 0.905 39 H 0.034 0.966 40 H 0.101 0.899 41 H 0.090 0.910 42 H 0.133 0.867 43 H 0.033 0.967 44 H 0.079 0.921 45 H 0.019 0.981 46 H 0.067 0.933 47 H -0.004 1.004 48 H 0.261 0.739 49 H 0.032 0.968 50 H 0.046 0.954 51 H 0.078 0.922 52 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.205 8.034 28.809 31.293 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.050 4.050 3 H 0.144 0.856 4 C 0.309 3.691 5 O -0.424 6.424 6 N -0.363 5.363 7 C 0.189 3.811 8 C -0.093 4.093 9 N -0.160 5.160 10 C -0.164 4.164 11 C -0.161 4.161 12 C -0.154 4.154 13 C -0.160 4.160 14 C -0.149 4.149 15 N -0.260 5.260 16 C -0.055 4.055 17 C -0.135 4.135 18 C 0.030 3.970 19 C -0.575 4.575 20 H 0.060 0.940 21 C -0.183 4.183 22 N -0.553 5.553 23 Si 0.776 3.224 24 H -0.199 1.199 25 H -0.204 1.204 26 H -0.201 1.201 27 C -0.137 4.137 28 C -0.055 4.055 29 H 0.085 0.915 30 H 0.124 0.876 31 H 0.073 0.927 32 H 0.269 0.731 33 H 0.134 0.866 34 H 0.075 0.925 35 H 0.048 0.952 36 H 0.098 0.902 37 H 0.087 0.913 38 H 0.114 0.886 39 H 0.053 0.947 40 H 0.120 0.880 41 H 0.109 0.891 42 H 0.151 0.849 43 H 0.051 0.949 44 H 0.097 0.903 45 H 0.038 0.962 46 H 0.085 0.915 47 H 0.015 0.985 48 H 0.071 0.929 49 H 0.050 0.950 50 H 0.065 0.935 51 H 0.096 0.904 52 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -6.710 6.953 28.454 30.050 hybrid contribution -0.180 -0.323 -1.687 1.727 sum -6.890 6.630 26.767 28.424 Atomic orbital electron populations 1.22332 0.92796 1.03152 1.04802 1.21767 0.96122 0.98932 0.88173 0.85642 1.20963 0.77173 0.85948 0.85042 1.90701 1.44122 1.21545 1.86060 1.45924 1.63684 1.22307 1.04403 1.18131 0.78923 0.96266 0.87768 1.30163 0.95763 0.91846 0.91532 1.81172 1.15464 1.09960 1.09385 1.21997 1.01340 0.93955 0.99072 1.21583 0.99748 0.99862 0.94899 1.21593 1.02312 0.94904 0.96556 1.21602 0.98715 0.97493 0.98206 1.21960 1.06291 0.97171 0.89492 1.61702 1.57494 1.04284 1.02553 1.22063 0.98640 0.95418 0.89373 1.21427 0.97135 0.98745 0.96181 1.18626 0.94198 0.92776 0.91413 1.21568 1.36303 1.04259 0.95349 0.93997 1.25673 0.96042 0.95742 1.00841 1.69980 1.45590 1.16698 1.23007 0.85680 0.78849 0.78515 0.79348 1.19897 1.20446 1.20107 1.21523 0.98867 0.97924 0.95378 1.22031 0.94584 0.90564 0.98271 0.91528 0.87575 0.92719 0.73058 0.86591 0.92520 0.95205 0.90247 0.91328 0.88640 0.94669 0.88043 0.89122 0.84929 0.94906 0.90303 0.96245 0.91451 0.98543 0.92943 0.94951 0.93540 0.90360 0.94811 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.05 8.30 71.98 0.60 -2.45 16 2 C 0.06 1.46 2.70 44.17 0.12 1.57 16 3 H 0.13 2.30 7.86 -2.39 -0.02 2.29 16 4 C 0.52 12.69 6.37 87.66 0.56 13.25 16 5 O -0.55 -19.11 11.56 -3.05 -0.04 -19.15 16 6 N -0.71 -9.81 5.09 -431.18 -2.19 -12.01 16 7 C 0.28 4.19 0.77 1.80 0.00 4.19 16 8 C 0.23 5.89 10.26 89.44 0.92 6.81 16 9 N -0.48 -16.33 18.54 20.01 0.37 -15.95 16 10 C -0.12 -1.91 4.64 30.60 0.14 -1.77 16 11 C -0.12 -1.72 5.70 30.60 0.17 -1.55 16 12 C -0.12 -0.87 5.92 30.59 0.18 -0.69 16 13 C -0.12 -0.92 5.70 30.61 0.17 -0.74 16 14 C -0.11 -0.62 4.83 30.61 0.15 -0.47 16 15 N -0.54 -18.93 4.34 -875.52 -3.80 -22.73 16 16 C 0.07 2.72 5.22 86.33 0.45 3.17 16 17 C -0.10 -4.78 5.12 30.65 0.16 -4.62 16 18 C 0.05 2.57 2.16 -11.46 -0.02 2.55 16 19 C -0.54 -31.61 8.56 25.60 0.22 -31.39 16 20 H 0.04 2.49 7.74 -2.91 -0.02 2.47 16 21 C 0.02 0.90 5.31 84.66 0.45 1.35 16 22 N -0.91 -53.57 11.37 21.45 0.24 -53.33 16 23 Si 0.95 45.61 29.54 68.60 2.03 47.64 16 24 H -0.27 -12.69 7.11 99.48 0.71 -11.98 16 25 H -0.28 -12.95 7.11 99.48 0.71 -12.25 16 26 H -0.28 -13.21 7.11 99.48 0.71 -12.50 16 27 C -0.10 -4.65 5.32 30.65 0.16 -4.49 16 28 C 0.07 2.79 4.16 86.33 0.36 3.15 16 29 H 0.07 1.29 7.09 -2.39 -0.02 1.28 16 30 H 0.11 0.92 8.14 -2.39 -0.02 0.90 16 31 H 0.05 1.15 6.44 -2.38 -0.02 1.14 16 32 H 0.43 2.04 8.47 -92.71 -0.79 1.25 16 33 H 0.12 1.04 8.14 -2.39 -0.02 1.02 16 34 H 0.06 1.37 6.17 -2.39 -0.01 1.35 16 35 H 0.03 0.60 7.23 -2.39 -0.02 0.58 16 36 H 0.08 0.99 8.14 -2.38 -0.02 0.97 16 37 H 0.07 0.51 8.14 -2.39 -0.02 0.49 16 38 H 0.10 0.27 8.14 -2.38 -0.02 0.25 16 39 H 0.03 0.48 7.22 -2.39 -0.02 0.46 16 40 H 0.10 0.30 8.14 -2.39 -0.02 0.28 16 41 H 0.09 0.37 8.14 -2.39 -0.02 0.35 16 42 H 0.13 -0.21 8.14 -2.38 -0.02 -0.23 16 43 H 0.03 1.19 7.13 -2.38 -0.02 1.18 16 44 H 0.08 2.58 7.95 -2.39 -0.02 2.56 16 45 H 0.02 1.00 8.14 -2.39 -0.02 0.99 16 46 H 0.07 3.67 6.17 -2.39 -0.01 3.65 16 47 H 0.00 -0.20 8.14 -2.39 -0.02 -0.22 16 48 H 0.26 14.51 8.31 -92.71 -0.77 13.74 16 49 H 0.03 1.64 8.14 -2.39 -0.02 1.62 16 50 H 0.05 2.12 8.14 -2.38 -0.02 2.11 16 51 H 0.08 2.99 5.95 -2.39 -0.01 2.97 16 52 H 0.03 1.22 6.59 -2.39 -0.02 1.20 16 Total: -1.00 -81.27 390.82 1.53 -79.74 By element: Atomic # 1 Polarization: 7.80 SS G_CDS: 0.13 Total: 7.93 kcal Atomic # 6 Polarization: -16.92 SS G_CDS: 4.79 Total: -12.13 kcal Atomic # 7 Polarization: -98.65 SS G_CDS: -5.37 Total: -104.02 kcal Atomic # 8 Polarization: -19.11 SS G_CDS: -0.04 Total: -19.15 kcal Atomic # 14 Polarization: 45.61 SS G_CDS: 2.03 Total: 47.64 kcal Total: -81.27 1.53 -79.74 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000541019233.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.817 kcal (2) G-P(sol) polarization free energy of solvation -81.275 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.458 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.533 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.742 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.925 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds