Wall clock time and date at job start Tue Mar 31 2020 18:36:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46894 * 1 3 3 C 1.46896 * 111.00196 * 2 1 4 4 C 1.50695 * 109.47442 * 293.95403 * 3 2 1 5 5 H 1.07997 * 119.99874 * 359.97438 * 4 3 2 6 6 C 1.37871 * 120.00074 * 179.97438 * 4 3 2 7 7 N 1.31515 * 120.00136 * 0.02562 * 6 4 3 8 8 Si 1.86802 * 119.99956 * 179.97438 * 6 4 3 9 9 H 1.48501 * 109.47214 * 0.02562 * 8 6 4 10 10 H 1.48502 * 109.47180 * 120.00238 * 8 6 4 11 11 H 1.48505 * 109.47245 * 239.99731 * 8 6 4 12 12 C 1.46902 * 110.99680 * 123.96018 * 2 1 3 13 13 C 1.53003 * 109.46880 * 164.48706 * 12 2 1 14 14 H 1.08993 * 109.47523 * 57.42800 * 13 12 2 15 15 O 1.42902 * 109.46672 * 297.42759 * 13 12 2 16 16 C 1.52999 * 109.46876 * 177.43355 * 13 12 2 17 17 N 1.46903 * 109.47133 * 184.99552 * 16 13 12 18 18 C 1.46900 * 111.00279 * 185.11655 * 17 16 13 19 19 H 1.09003 * 109.38485 * 32.68517 * 18 17 16 20 20 C 1.52898 * 109.39057 * 272.88909 * 18 17 16 21 21 N 1.47165 * 108.50137 * 189.55993 * 20 18 17 22 22 C 1.46901 * 110.99642 * 307.83491 * 21 20 18 23 23 C 1.46623 * 110.25567 * 71.26196 * 21 20 18 24 24 C 1.50622 * 110.49364 * 307.47434 * 23 21 20 25 25 C 1.38731 * 118.42077 * 197.37174 * 24 23 21 26 26 C 1.38022 * 120.37485 * 180.45816 * 25 24 23 27 27 C 1.38262 * 119.86966 * 359.58658 * 26 25 24 28 28 C 1.38035 * 119.82761 * 0.37792 * 27 26 25 29 29 C 1.37829 * 121.84966 * 17.52956 * 24 23 21 30 30 H 1.09001 * 109.47313 * 301.30089 * 1 2 3 31 31 H 1.09003 * 109.47224 * 61.29769 * 1 2 3 32 32 H 1.08998 * 109.47531 * 181.29272 * 1 2 3 33 33 H 1.09002 * 109.46987 * 53.95600 * 3 2 1 34 34 H 1.09004 * 109.47011 * 173.94933 * 3 2 1 35 35 H 0.97004 * 120.00190 * 179.97438 * 7 6 4 36 36 H 1.08994 * 109.47267 * 44.48317 * 12 2 1 37 37 H 1.08997 * 109.46965 * 284.48061 * 12 2 1 38 38 H 0.96693 * 114.00079 * 300.00136 * 15 13 12 39 39 H 1.09004 * 109.47234 * 64.99423 * 16 13 12 40 40 H 1.09001 * 109.47298 * 304.99285 * 16 13 12 41 41 H 1.00902 * 110.99571 * 61.16533 * 17 16 13 42 42 H 1.08997 * 109.63300 * 69.85231 * 20 18 17 43 43 H 1.08999 * 109.62763 * 309.25849 * 20 18 17 44 44 H 1.09007 * 109.46895 * 186.94628 * 22 21 20 45 45 H 1.08994 * 109.47480 * 306.94505 * 22 21 20 46 46 H 1.08998 * 109.46738 * 66.95777 * 22 21 20 47 47 H 1.09002 * 109.30231 * 187.15958 * 23 21 20 48 48 H 1.08999 * 109.30571 * 67.78473 * 23 21 20 49 49 H 1.08002 * 119.81428 * 0.18518 * 25 24 23 50 50 H 1.08000 * 120.06396 * 179.80731 * 26 25 24 51 51 H 1.07999 * 120.08581 * 180.15181 * 27 26 25 52 52 H 1.07989 * 119.82840 * 179.74746 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6370 2.0471 -1.2984 5 1 1.0747 1.5113 -2.0487 6 6 2.0269 3.3494 -1.5283 7 7 2.7120 4.0018 -0.6148 8 14 1.5831 4.1868 -3.1381 9 1 0.8158 3.2442 -3.9914 10 1 0.7552 5.3878 -2.8596 11 1 2.8251 4.5945 -3.8429 12 6 1.9953 -0.7661 1.1375 13 6 3.4757 -1.0739 0.9038 14 1 4.0225 -0.1419 0.7613 15 8 3.6143 -1.8903 -0.2608 16 6 4.0400 -1.8160 2.1169 17 7 5.4866 -2.0059 1.9454 18 6 6.0432 -2.8212 3.0333 19 1 5.2979 -3.5466 3.3596 20 6 6.4171 -1.9150 4.2066 21 7 7.1782 -2.7080 5.1852 22 6 6.4565 -3.9367 5.5423 23 6 8.5127 -3.0157 4.6614 24 6 8.4114 -3.6426 3.2956 25 6 9.5115 -4.3274 2.8002 26 6 9.4662 -4.9093 1.5494 27 6 8.3155 -4.8171 0.7884 28 6 7.2198 -4.1367 1.2801 29 6 7.2654 -3.5491 2.5355 30 1 -0.3634 0.5339 0.8781 31 1 -0.3634 0.4936 -0.9014 32 1 -0.3634 -1.0274 0.0232 33 1 1.5611 1.9273 0.8310 34 1 3.0797 1.3443 0.1083 35 1 2.9867 4.9179 -0.7767 36 1 1.4410 -1.6996 1.2346 37 1 1.8856 -0.1818 2.0510 38 1 3.1522 -2.7377 -0.2044 39 1 3.5541 -2.7876 2.2068 40 1 3.8546 -1.2322 3.0186 41 1 5.9623 -1.1186 1.8787 42 1 5.5115 -1.5281 4.6737 43 1 7.0305 -1.0878 3.8493 44 1 6.9789 -4.4417 6.3549 45 1 5.4454 -3.6844 5.8617 46 1 6.4101 -4.5957 4.6753 47 1 9.0150 -3.7066 5.3385 48 1 9.0939 -2.0962 4.5934 49 1 10.4100 -4.4019 3.3948 50 1 10.3266 -5.4386 1.1674 51 1 8.2754 -5.2732 -0.1898 52 1 6.3225 -4.0612 0.6840 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591757314.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:36:35 Heat of formation + Delta-G solvation = -3.074243 kcal Electronic energy + Delta-G solvation = -29204.019381 eV Core-core repulsion = 25396.410006 eV Total energy + Delta-G solvation = -3807.609376 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.82556 -38.17844 -37.45636 -35.94359 -34.93345 -32.47029 -31.73495 -31.38129 -29.72311 -28.27830 -27.52141 -27.26306 -25.46435 -23.83931 -23.17664 -22.95722 -21.91355 -21.60196 -20.02801 -19.62031 -16.99724 -16.56989 -16.48586 -15.98194 -15.82474 -15.52227 -15.25603 -15.07500 -14.64720 -14.62696 -14.36961 -14.16322 -13.79760 -13.61420 -13.36012 -13.19247 -12.97688 -12.77344 -12.49576 -12.41934 -12.07080 -11.96712 -11.89756 -11.80378 -11.73511 -11.38663 -11.28818 -11.15678 -10.93035 -10.82249 -10.70011 -10.61210 -10.34163 -9.74719 -9.51928 -9.16085 -9.10613 -8.86939 -8.76030 -8.40574 -8.12103 -7.19510 -6.00412 -4.00497 1.17899 1.29677 3.33294 3.40632 3.45963 3.57892 3.60606 4.04634 4.44375 4.45490 4.53892 4.59886 4.78750 4.83187 4.88885 4.90504 4.96198 5.02697 5.16035 5.23713 5.27316 5.31745 5.34792 5.37674 5.46454 5.49450 5.52603 5.59213 5.61617 5.66253 5.70404 5.74318 5.90399 5.96522 6.03689 6.09908 6.25297 6.33673 6.41884 6.44796 6.51752 6.60575 6.71588 6.72444 6.87312 6.95744 7.25430 7.28940 7.32093 7.82597 8.09891 8.18388 8.26601 8.57651 9.06940 9.63414 11.10799 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.015249 B = 0.002424 C = 0.002357 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1835.777337 B =11548.910657 C =11876.603599 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 N -0.531 5.531 3 C 0.192 3.808 4 C -0.502 4.502 5 H 0.063 0.937 6 C 0.054 3.946 7 N -0.900 5.900 8 Si 0.897 3.103 9 H -0.272 1.272 10 H -0.286 1.286 11 H -0.284 1.284 12 C 0.026 3.974 13 C 0.120 3.880 14 H 0.102 0.898 15 O -0.530 6.530 16 C 0.028 3.972 17 N -0.667 5.667 18 C 0.095 3.905 19 H 0.087 0.913 20 C 0.023 3.977 21 N -0.527 5.527 22 C 0.016 3.984 23 C 0.090 3.910 24 C -0.114 4.114 25 C -0.124 4.124 26 C -0.119 4.119 27 C -0.129 4.129 28 C -0.080 4.080 29 C -0.073 4.073 30 H 0.009 0.991 31 H 0.074 0.926 32 H 0.042 0.958 33 H -0.012 1.012 34 H 0.031 0.969 35 H 0.260 0.740 36 H 0.060 0.940 37 H 0.028 0.972 38 H 0.359 0.641 39 H 0.071 0.929 40 H 0.037 0.963 41 H 0.348 0.652 42 H 0.081 0.919 43 H 0.081 0.919 44 H 0.068 0.932 45 H 0.067 0.933 46 H 0.035 0.965 47 H 0.085 0.915 48 H 0.089 0.911 49 H 0.118 0.882 50 H 0.118 0.882 51 H 0.120 0.880 52 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.447 -19.198 12.272 25.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 N -0.255 5.255 3 C 0.067 3.933 4 C -0.541 4.541 5 H 0.082 0.918 6 C -0.147 4.147 7 N -0.540 5.540 8 Si 0.725 3.275 9 H -0.197 1.197 10 H -0.212 1.212 11 H -0.210 1.210 12 C -0.104 4.104 13 C 0.059 3.941 14 H 0.120 0.880 15 O -0.333 6.333 16 C -0.101 4.101 17 N -0.297 5.297 18 C -0.016 4.016 19 H 0.105 0.895 20 C -0.107 4.107 21 N -0.248 5.248 22 C -0.132 4.132 23 C -0.038 4.038 24 C -0.116 4.116 25 C -0.143 4.143 26 C -0.137 4.137 27 C -0.147 4.147 28 C -0.098 4.098 29 C -0.074 4.074 30 H 0.028 0.972 31 H 0.092 0.908 32 H 0.061 0.939 33 H 0.005 0.995 34 H 0.049 0.951 35 H 0.069 0.931 36 H 0.078 0.922 37 H 0.046 0.954 38 H 0.204 0.796 39 H 0.089 0.911 40 H 0.055 0.945 41 H 0.167 0.833 42 H 0.100 0.900 43 H 0.100 0.900 44 H 0.087 0.913 45 H 0.086 0.914 46 H 0.054 0.946 47 H 0.103 0.897 48 H 0.107 0.893 49 H 0.136 0.864 50 H 0.136 0.864 51 H 0.138 0.862 52 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 11.000 -18.961 11.694 24.845 hybrid contribution -0.853 0.707 0.146 1.117 sum 10.147 -18.254 11.840 24.008 Atomic orbital electron populations 1.22193 0.88880 0.98882 1.00898 1.62036 1.06483 1.17833 1.39137 1.19781 0.95490 0.81475 0.96551 1.21184 1.34484 0.96743 1.01660 0.91849 1.24983 0.95362 0.97392 0.96972 1.69963 1.38639 1.11383 1.34055 0.86451 0.78156 0.79233 0.83643 1.19656 1.21207 1.20989 1.22679 0.95951 0.98175 0.93569 1.21855 0.94323 0.94010 0.83883 0.88027 1.86702 1.75798 1.31959 1.38800 1.22784 0.88477 1.00527 0.98360 1.60379 1.03326 1.22294 1.43725 1.21005 0.94484 0.95843 0.90302 0.89479 1.23046 0.99101 0.96756 0.91799 1.62608 1.02871 1.19471 1.39872 1.22467 0.99062 0.91350 1.00331 1.21144 0.91551 1.00413 0.90686 1.20368 0.93963 0.99467 0.97812 1.20965 0.97839 0.99041 0.96413 1.21087 0.98068 0.99904 0.94682 1.21191 0.93647 0.99939 0.99924 1.21201 0.99009 0.94784 0.94814 1.19477 0.94074 0.98962 0.94900 0.97213 0.90776 0.93889 0.99462 0.95057 0.93055 0.92179 0.95359 0.79625 0.91060 0.94461 0.83313 0.90017 0.90025 0.91313 0.91389 0.94624 0.89699 0.89337 0.86368 0.86377 0.86163 0.84820 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.78 9.33 60.06 0.56 1.34 16 2 N -0.53 -11.43 4.62 -244.38 -1.13 -12.56 16 3 C 0.19 5.02 4.57 -4.98 -0.02 5.00 16 4 C -0.50 -14.33 8.53 -34.45 -0.29 -14.62 16 5 H 0.06 1.81 7.10 -52.49 -0.37 1.44 16 6 C 0.05 1.55 5.46 -17.82 -0.10 1.45 16 7 N -0.90 -26.94 13.29 55.43 0.74 -26.21 16 8 Si 0.90 22.00 29.54 -169.99 -5.02 16.98 16 9 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 10 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 11 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 12 C 0.03 0.44 4.62 -3.82 -0.02 0.42 16 13 C 0.12 1.89 3.21 -26.73 -0.09 1.81 16 14 H 0.10 1.94 6.50 -51.93 -0.34 1.61 16 15 O -0.53 -8.94 13.20 -35.23 -0.46 -9.40 16 16 C 0.03 0.34 5.16 -3.82 -0.02 0.32 16 17 N -0.67 -7.79 5.39 -108.00 -0.58 -8.37 16 18 C 0.09 0.97 1.92 -68.91 -0.13 0.84 16 19 H 0.09 0.89 6.53 -51.93 -0.34 0.55 16 20 C 0.02 0.22 5.38 -3.73 -0.02 0.20 16 21 N -0.53 -4.90 5.28 -244.50 -1.29 -6.19 16 22 C 0.02 0.13 8.65 60.07 0.52 0.65 16 23 C 0.09 0.78 5.54 -5.16 -0.03 0.76 16 24 C -0.11 -1.14 5.23 -104.63 -0.55 -1.69 16 25 C -0.12 -1.15 9.65 -39.48 -0.38 -1.53 16 26 C -0.12 -1.12 10.05 -39.65 -0.40 -1.52 16 27 C -0.13 -1.33 10.05 -39.65 -0.40 -1.73 16 28 C -0.08 -0.91 9.26 -39.49 -0.37 -1.28 16 29 C -0.07 -0.80 4.85 -104.60 -0.51 -1.31 16 30 H 0.01 0.18 8.13 -51.93 -0.42 -0.24 16 31 H 0.07 1.55 6.89 -51.93 -0.36 1.19 16 32 H 0.04 0.70 7.98 -51.93 -0.41 0.28 16 33 H -0.01 -0.35 8.12 -51.93 -0.42 -0.77 16 34 H 0.03 0.87 6.34 -51.93 -0.33 0.54 16 35 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 36 H 0.06 0.87 7.89 -51.93 -0.41 0.46 16 37 H 0.03 0.49 8.06 -51.93 -0.42 0.07 16 38 H 0.36 4.67 9.04 45.56 0.41 5.08 16 39 H 0.07 0.76 7.92 -51.93 -0.41 0.35 16 40 H 0.04 0.43 7.99 -51.93 -0.42 0.01 16 41 H 0.35 4.33 8.36 -39.29 -0.33 4.00 16 42 H 0.08 0.79 7.99 -51.93 -0.42 0.38 16 43 H 0.08 0.84 7.84 -51.93 -0.41 0.43 16 44 H 0.07 0.49 8.14 -51.92 -0.42 0.07 16 45 H 0.07 0.52 8.11 -51.93 -0.42 0.10 16 46 H 0.04 0.32 5.79 -51.93 -0.30 0.02 16 47 H 0.08 0.63 8.06 -51.93 -0.42 0.21 16 48 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 49 H 0.12 0.85 8.06 -52.49 -0.42 0.43 16 50 H 0.12 0.86 8.06 -52.49 -0.42 0.44 16 51 H 0.12 1.06 8.06 -52.49 -0.42 0.63 16 52 H 0.13 1.62 7.70 -52.49 -0.40 1.21 16 LS Contribution 405.22 15.07 6.11 6.11 Total: -1.00 -31.86 405.22 -12.06 -43.93 By element: Atomic # 1 Polarization: 14.81 SS G_CDS: -8.18 Total: 6.63 kcal Atomic # 6 Polarization: -8.68 SS G_CDS: -2.24 Total: -10.91 kcal Atomic # 7 Polarization: -51.06 SS G_CDS: -2.27 Total: -53.33 kcal Atomic # 8 Polarization: -8.94 SS G_CDS: -0.46 Total: -9.40 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.02 Total: 16.98 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -31.86 -12.06 -43.93 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591757314.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.852 kcal (2) G-P(sol) polarization free energy of solvation -31.863 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.989 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.063 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.926 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.074 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds