Wall clock time and date at job start Tue Mar 31 2020 18:36:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46894 * 1 3 3 C 1.46896 * 111.00196 * 2 1 4 4 C 1.50695 * 109.47442 * 293.95403 * 3 2 1 5 5 H 1.07997 * 119.99874 * 359.97438 * 4 3 2 6 6 C 1.37871 * 120.00074 * 179.97438 * 4 3 2 7 7 N 1.31515 * 120.00136 * 0.02562 * 6 4 3 8 8 Si 1.86802 * 119.99956 * 179.97438 * 6 4 3 9 9 H 1.48501 * 109.47214 * 0.02562 * 8 6 4 10 10 H 1.48502 * 109.47180 * 120.00238 * 8 6 4 11 11 H 1.48505 * 109.47245 * 239.99731 * 8 6 4 12 12 C 1.46902 * 110.99680 * 123.96018 * 2 1 3 13 13 C 1.53003 * 109.46880 * 164.48706 * 12 2 1 14 14 H 1.08993 * 109.47523 * 57.42800 * 13 12 2 15 15 O 1.42902 * 109.46672 * 297.42759 * 13 12 2 16 16 C 1.52999 * 109.46876 * 177.43355 * 13 12 2 17 17 N 1.46903 * 109.47133 * 184.99552 * 16 13 12 18 18 C 1.46900 * 111.00279 * 185.11655 * 17 16 13 19 19 H 1.09003 * 109.38485 * 32.68517 * 18 17 16 20 20 C 1.52898 * 109.39057 * 272.88909 * 18 17 16 21 21 N 1.47165 * 108.50137 * 189.55993 * 20 18 17 22 22 C 1.46901 * 110.99642 * 307.83491 * 21 20 18 23 23 C 1.46623 * 110.25567 * 71.26196 * 21 20 18 24 24 C 1.50622 * 110.49364 * 307.47434 * 23 21 20 25 25 C 1.38731 * 118.42077 * 197.37174 * 24 23 21 26 26 C 1.38022 * 120.37485 * 180.45816 * 25 24 23 27 27 C 1.38262 * 119.86966 * 359.58658 * 26 25 24 28 28 C 1.38035 * 119.82761 * 0.37792 * 27 26 25 29 29 C 1.37829 * 121.84966 * 17.52956 * 24 23 21 30 30 H 1.09001 * 109.47313 * 301.30089 * 1 2 3 31 31 H 1.09003 * 109.47224 * 61.29769 * 1 2 3 32 32 H 1.08998 * 109.47531 * 181.29272 * 1 2 3 33 33 H 1.09002 * 109.46987 * 53.95600 * 3 2 1 34 34 H 1.09004 * 109.47011 * 173.94933 * 3 2 1 35 35 H 0.97004 * 120.00190 * 179.97438 * 7 6 4 36 36 H 1.08994 * 109.47267 * 44.48317 * 12 2 1 37 37 H 1.08997 * 109.46965 * 284.48061 * 12 2 1 38 38 H 0.96693 * 114.00079 * 300.00136 * 15 13 12 39 39 H 1.09004 * 109.47234 * 64.99423 * 16 13 12 40 40 H 1.09001 * 109.47298 * 304.99285 * 16 13 12 41 41 H 1.00902 * 110.99571 * 61.16533 * 17 16 13 42 42 H 1.08997 * 109.63300 * 69.85231 * 20 18 17 43 43 H 1.08999 * 109.62763 * 309.25849 * 20 18 17 44 44 H 1.09007 * 109.46895 * 186.94628 * 22 21 20 45 45 H 1.08994 * 109.47480 * 306.94505 * 22 21 20 46 46 H 1.08998 * 109.46738 * 66.95777 * 22 21 20 47 47 H 1.09002 * 109.30231 * 187.15958 * 23 21 20 48 48 H 1.08999 * 109.30571 * 67.78473 * 23 21 20 49 49 H 1.08002 * 119.81428 * 0.18518 * 25 24 23 50 50 H 1.08000 * 120.06396 * 179.80731 * 26 25 24 51 51 H 1.07999 * 120.08581 * 180.15181 * 27 26 25 52 52 H 1.07989 * 119.82840 * 179.74746 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6370 2.0471 -1.2984 5 1 1.0747 1.5113 -2.0487 6 6 2.0269 3.3494 -1.5283 7 7 2.7120 4.0018 -0.6148 8 14 1.5831 4.1868 -3.1381 9 1 0.8158 3.2442 -3.9914 10 1 0.7552 5.3878 -2.8596 11 1 2.8251 4.5945 -3.8429 12 6 1.9953 -0.7661 1.1375 13 6 3.4757 -1.0739 0.9038 14 1 4.0225 -0.1419 0.7613 15 8 3.6143 -1.8903 -0.2608 16 6 4.0400 -1.8160 2.1169 17 7 5.4866 -2.0059 1.9454 18 6 6.0432 -2.8212 3.0333 19 1 5.2979 -3.5466 3.3596 20 6 6.4171 -1.9150 4.2066 21 7 7.1782 -2.7080 5.1852 22 6 6.4565 -3.9367 5.5423 23 6 8.5127 -3.0157 4.6614 24 6 8.4114 -3.6426 3.2956 25 6 9.5115 -4.3274 2.8002 26 6 9.4662 -4.9093 1.5494 27 6 8.3155 -4.8171 0.7884 28 6 7.2198 -4.1367 1.2801 29 6 7.2654 -3.5491 2.5355 30 1 -0.3634 0.5339 0.8781 31 1 -0.3634 0.4936 -0.9014 32 1 -0.3634 -1.0274 0.0232 33 1 1.5611 1.9273 0.8310 34 1 3.0797 1.3443 0.1083 35 1 2.9867 4.9179 -0.7767 36 1 1.4410 -1.6996 1.2346 37 1 1.8856 -0.1818 2.0510 38 1 3.1522 -2.7377 -0.2044 39 1 3.5541 -2.7876 2.2068 40 1 3.8546 -1.2322 3.0186 41 1 5.9623 -1.1186 1.8787 42 1 5.5115 -1.5281 4.6737 43 1 7.0305 -1.0878 3.8493 44 1 6.9789 -4.4417 6.3549 45 1 5.4454 -3.6844 5.8617 46 1 6.4101 -4.5957 4.6753 47 1 9.0150 -3.7066 5.3385 48 1 9.0939 -2.0962 4.5934 49 1 10.4100 -4.4019 3.3948 50 1 10.3266 -5.4386 1.1674 51 1 8.2754 -5.2732 -0.1898 52 1 6.3225 -4.0612 0.6840 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591757314.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:36:34 Heat of formation + Delta-G solvation = -28.191824 kcal Electronic energy + Delta-G solvation = -29205.108561 eV Core-core repulsion = 25396.410006 eV Total energy + Delta-G solvation = -3808.698556 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.58697 -39.49074 -38.27825 -37.30946 -36.09200 -34.60336 -32.62869 -32.16236 -30.82608 -29.52374 -29.03446 -28.19392 -26.78169 -25.32800 -24.28553 -23.73191 -22.92489 -22.70521 -21.66500 -20.39147 -18.61502 -17.90660 -17.47514 -16.95679 -16.90602 -16.57280 -16.38646 -16.23893 -16.18330 -15.76387 -15.43324 -15.18975 -15.04391 -14.98215 -14.39457 -14.29214 -14.01778 -13.98117 -13.67072 -13.48239 -13.17513 -13.13653 -12.95417 -12.85948 -12.64575 -12.60190 -12.58438 -12.55262 -12.46850 -12.32021 -12.17790 -12.03514 -11.60800 -11.49139 -11.29463 -10.69859 -10.60986 -9.97552 -9.65011 -9.52008 -8.97649 -8.92290 -8.20920 -6.29782 0.41539 0.52457 1.38924 1.40413 1.53691 2.39893 2.74554 2.86504 3.09973 3.12920 3.44374 3.64861 3.74428 3.81081 3.86564 3.97972 4.06832 4.14196 4.22061 4.29131 4.33735 4.36075 4.40224 4.45977 4.56852 4.56920 4.60264 4.64243 4.70286 4.74070 4.75786 4.77441 4.78268 4.93193 5.00325 5.07344 5.11608 5.16306 5.20053 5.24377 5.31028 5.52062 5.63746 5.65578 5.67380 5.86752 5.99474 6.06200 6.08331 6.16140 6.27262 6.35155 6.65818 6.86165 7.13991 7.39506 8.90382 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.015249 B = 0.002424 C = 0.002357 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1835.777337 B =11548.910657 C =11876.603599 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.042 3.958 2 N -0.543 5.543 3 C 0.209 3.791 4 C -0.521 4.521 5 H 0.059 0.941 6 C 0.000 4.000 7 N -0.934 5.934 8 Si 0.967 3.033 9 H -0.264 1.264 10 H -0.276 1.276 11 H -0.279 1.279 12 C 0.027 3.973 13 C 0.128 3.872 14 H 0.059 0.941 15 O -0.552 6.552 16 C 0.045 3.955 17 N -0.674 5.674 18 C 0.105 3.895 19 H 0.090 0.910 20 C 0.027 3.973 21 N -0.532 5.532 22 C 0.018 3.982 23 C 0.091 3.909 24 C -0.120 4.120 25 C -0.127 4.127 26 C -0.123 4.123 27 C -0.140 4.140 28 C -0.099 4.099 29 C -0.087 4.087 30 H 0.008 0.992 31 H 0.053 0.947 32 H 0.082 0.918 33 H -0.042 1.042 34 H 0.006 0.994 35 H 0.264 0.736 36 H 0.097 0.903 37 H 0.027 0.973 38 H 0.377 0.623 39 H 0.093 0.907 40 H 0.044 0.956 41 H 0.340 0.660 42 H 0.082 0.918 43 H 0.072 0.928 44 H 0.080 0.920 45 H 0.072 0.928 46 H 0.028 0.972 47 H 0.102 0.898 48 H 0.089 0.911 49 H 0.142 0.858 50 H 0.141 0.859 51 H 0.130 0.870 52 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.609 -20.834 12.698 26.606 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 N -0.267 5.267 3 C 0.083 3.917 4 C -0.559 4.559 5 H 0.078 0.922 6 C -0.198 4.198 7 N -0.575 5.575 8 Si 0.792 3.208 9 H -0.188 1.188 10 H -0.202 1.202 11 H -0.205 1.205 12 C -0.102 4.102 13 C 0.068 3.932 14 H 0.077 0.923 15 O -0.358 6.358 16 C -0.085 4.085 17 N -0.304 5.304 18 C -0.006 4.006 19 H 0.108 0.892 20 C -0.103 4.103 21 N -0.253 5.253 22 C -0.130 4.130 23 C -0.037 4.037 24 C -0.122 4.122 25 C -0.145 4.145 26 C -0.141 4.141 27 C -0.158 4.158 28 C -0.117 4.117 29 C -0.088 4.088 30 H 0.027 0.973 31 H 0.072 0.928 32 H 0.101 0.899 33 H -0.024 1.024 34 H 0.024 0.976 35 H 0.072 0.928 36 H 0.115 0.885 37 H 0.045 0.955 38 H 0.224 0.776 39 H 0.111 0.889 40 H 0.062 0.938 41 H 0.158 0.842 42 H 0.101 0.899 43 H 0.090 0.910 44 H 0.099 0.901 45 H 0.091 0.909 46 H 0.046 0.954 47 H 0.120 0.880 48 H 0.107 0.893 49 H 0.160 0.840 50 H 0.158 0.842 51 H 0.148 0.852 52 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 11.147 -20.635 12.134 26.406 hybrid contribution -0.868 1.139 0.035 1.432 sum 10.279 -19.496 12.169 25.176 Atomic orbital electron populations 1.22211 0.87508 1.01123 0.99825 1.61933 1.07858 1.15161 1.41771 1.19386 0.93826 0.83856 0.94629 1.21498 1.34575 0.97383 1.02460 0.92241 1.25899 0.95107 0.98118 1.00644 1.70083 1.39497 1.11838 1.36089 0.85364 0.78071 0.78230 0.79143 1.18839 1.20205 1.20491 1.22803 0.96871 0.98812 0.91754 1.21630 0.93374 0.92955 0.85269 0.92306 1.86652 1.76381 1.33136 1.39583 1.22567 0.88613 1.00998 0.96329 1.60355 1.03191 1.21999 1.44862 1.20923 0.94353 0.95502 0.89793 0.89180 1.22953 0.99070 0.96493 0.91759 1.62634 1.03189 1.20028 1.39499 1.22490 0.99445 0.90738 1.00353 1.21208 0.91385 1.00743 0.90352 1.20575 0.93845 0.99490 0.98326 1.21296 0.98397 0.98213 0.96605 1.21394 0.98369 0.99699 0.94660 1.21404 0.93804 0.99968 1.00652 1.21204 0.99158 0.96059 0.95270 1.19598 0.94784 0.99378 0.95063 0.97339 0.92795 0.89897 1.02394 0.97632 0.92755 0.88488 0.95507 0.77583 0.88908 0.93813 0.84179 0.89929 0.90973 0.90096 0.90936 0.95387 0.87992 0.89302 0.84030 0.84154 0.85165 0.86143 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.58 9.33 127.69 1.19 2.77 16 2 N -0.54 -23.52 4.62 -927.08 -4.29 -27.81 16 3 C 0.21 11.38 4.57 85.56 0.39 11.77 16 4 C -0.52 -30.46 8.53 25.60 0.22 -30.24 16 5 H 0.06 3.45 7.10 -2.91 -0.02 3.43 16 6 C 0.00 0.00 5.46 84.65 0.46 0.46 16 7 N -0.93 -57.28 13.29 21.45 0.28 -57.00 16 8 Si 0.97 45.54 29.54 68.60 2.03 47.56 16 9 H -0.26 -12.00 7.11 99.48 0.71 -11.30 16 10 H -0.28 -12.53 7.11 99.48 0.71 -11.83 16 11 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 12 C 0.03 0.88 4.62 86.30 0.40 1.28 16 13 C 0.13 4.10 3.21 30.59 0.10 4.20 16 14 H 0.06 2.40 6.50 -2.39 -0.02 2.39 16 15 O -0.55 -18.58 13.20 -148.98 -1.97 -20.54 16 16 C 0.04 1.03 5.16 86.30 0.45 1.48 16 17 N -0.67 -15.90 5.39 -495.59 -2.67 -18.57 16 18 C 0.11 2.10 1.92 44.14 0.08 2.19 16 19 H 0.09 1.74 6.53 -2.39 -0.02 1.72 16 20 C 0.03 0.52 5.38 86.22 0.46 0.98 16 21 N -0.53 -9.19 5.28 -927.45 -4.90 -14.08 16 22 C 0.02 0.26 8.65 127.69 1.10 1.36 16 23 C 0.09 1.44 5.54 85.59 0.47 1.91 16 24 C -0.12 -2.26 5.23 -19.87 -0.10 -2.37 16 25 C -0.13 -2.12 9.65 22.34 0.22 -1.90 16 26 C -0.12 -2.12 10.05 22.22 0.22 -1.90 16 27 C -0.14 -2.82 10.05 22.23 0.22 -2.60 16 28 C -0.10 -2.26 9.26 22.33 0.21 -2.06 16 29 C -0.09 -1.88 4.85 -19.85 -0.10 -1.98 16 30 H 0.01 0.31 8.13 -2.39 -0.02 0.29 16 31 H 0.05 2.24 6.89 -2.39 -0.02 2.23 16 32 H 0.08 2.48 7.98 -2.39 -0.02 2.46 16 33 H -0.04 -2.44 8.12 -2.39 -0.02 -2.46 16 34 H 0.01 0.33 6.34 -2.39 -0.02 0.32 16 35 H 0.26 15.15 8.31 -92.71 -0.77 14.38 16 36 H 0.10 2.51 7.89 -2.39 -0.02 2.49 16 37 H 0.03 0.91 8.06 -2.39 -0.02 0.89 16 38 H 0.38 9.30 9.04 -74.06 -0.67 8.63 16 39 H 0.09 1.76 7.92 -2.38 -0.02 1.75 16 40 H 0.04 0.96 7.99 -2.39 -0.02 0.94 16 41 H 0.34 8.87 8.36 -89.69 -0.75 8.12 16 42 H 0.08 1.54 7.99 -2.39 -0.02 1.52 16 43 H 0.07 1.50 7.84 -2.39 -0.02 1.48 16 44 H 0.08 0.98 8.14 -2.38 -0.02 0.96 16 45 H 0.07 0.98 8.11 -2.39 -0.02 0.96 16 46 H 0.03 0.45 5.79 -2.39 -0.01 0.44 16 47 H 0.10 1.26 8.06 -2.39 -0.02 1.24 16 48 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 49 H 0.14 1.64 8.06 -2.91 -0.02 1.61 16 50 H 0.14 1.72 8.06 -2.91 -0.02 1.69 16 51 H 0.13 2.22 8.06 -2.91 -0.02 2.20 16 52 H 0.12 3.00 7.70 -2.92 -0.02 2.98 16 Total: -1.00 -70.32 405.22 -6.01 -76.33 By element: Atomic # 1 Polarization: 29.26 SS G_CDS: -0.51 Total: 28.75 kcal Atomic # 6 Polarization: -20.63 SS G_CDS: 6.00 Total: -14.63 kcal Atomic # 7 Polarization: -105.90 SS G_CDS: -11.57 Total: -117.46 kcal Atomic # 8 Polarization: -18.58 SS G_CDS: -1.97 Total: -20.54 kcal Atomic # 14 Polarization: 45.54 SS G_CDS: 2.03 Total: 47.56 kcal Total: -70.32 -6.01 -76.33 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591757314.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.139 kcal (2) G-P(sol) polarization free energy of solvation -70.319 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.179 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.013 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.331 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.192 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds