Wall clock time and date at job start Tue Mar 31 2020 17:55:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46801 * 2 1 4 4 C 1.50699 * 109.46866 * 119.99935 * 2 1 3 5 5 O 1.21280 * 120.00255 * 119.99948 * 4 2 1 6 6 N 1.34779 * 120.00378 * 299.99920 * 4 2 1 7 7 C 1.46497 * 120.00488 * 179.97438 * 6 4 2 8 8 C 1.47206 * 109.46675 * 60.00126 * 7 6 4 9 9 N 4.99258 * 130.96267 * 104.44703 * 2 1 3 10 10 C 1.52997 * 109.47389 * 300.00288 * 7 6 4 11 11 C 1.52993 * 109.47024 * 179.97438 * 10 7 6 12 12 C 1.53002 * 109.47392 * 60.00071 * 11 10 7 13 13 C 1.52997 * 109.46978 * 299.99957 * 12 11 10 14 14 C 1.52997 * 109.47188 * 179.97438 * 7 6 4 15 15 N 1.46898 * 109.47006 * 239.99936 * 2 1 3 16 16 C 1.46846 * 110.99901 * 306.04838 * 15 2 1 17 17 C 1.53040 * 109.51996 * 185.84350 * 16 15 2 18 18 C 1.53116 * 109.27629 * 300.81684 * 17 16 15 19 19 C 1.53114 * 109.15955 * 57.65897 * 18 17 16 20 20 H 1.09000 * 109.50286 * 62.32566 * 19 18 17 21 21 C 1.50699 * 109.50375 * 182.40417 * 19 18 17 22 22 H 1.07995 * 120.00315 * 119.99782 * 21 19 18 23 23 C 1.37884 * 119.99873 * 299.99779 * 21 19 18 24 24 N 1.31513 * 120.00083 * 0.02562 * 23 21 19 25 25 Si 1.86803 * 120.00026 * 179.97438 * 23 21 19 26 26 H 1.48497 * 109.46836 * 90.00238 * 25 23 21 27 27 H 1.48502 * 109.47043 * 210.00144 * 25 23 21 28 28 H 1.48498 * 109.47147 * 330.00112 * 25 23 21 29 29 C 1.46840 * 110.99930 * 70.25839 * 15 2 1 30 30 H 1.09001 * 109.47002 * 59.99846 * 1 2 3 31 31 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.47050 * 300.00112 * 1 2 3 33 33 H 0.97003 * 119.99556 * 0.02562 * 6 4 2 34 34 H 1.09002 * 109.46777 * 300.00110 * 10 7 6 35 35 H 1.09000 * 109.47140 * 59.99537 * 10 7 6 36 36 H 1.09002 * 109.47722 * 299.99886 * 11 10 7 37 37 H 1.09004 * 109.46862 * 179.97438 * 11 10 7 38 38 H 1.08998 * 109.47387 * 179.97438 * 12 11 10 39 39 H 1.09002 * 109.47097 * 59.99758 * 12 11 10 40 40 H 1.09002 * 109.47045 * 299.99833 * 13 12 11 41 41 H 1.09000 * 109.47140 * 179.97438 * 13 12 11 42 42 H 1.09004 * 109.47261 * 300.00255 * 14 7 6 43 43 H 1.09002 * 109.47153 * 60.00427 * 14 7 6 44 44 H 1.09002 * 109.46093 * 305.85435 * 16 15 2 45 45 H 1.08993 * 109.46918 * 65.82376 * 16 15 2 46 46 H 1.09002 * 109.50707 * 60.76471 * 17 16 15 47 47 H 1.09003 * 109.50047 * 180.84107 * 17 16 15 48 48 H 1.09002 * 109.52150 * 177.56273 * 18 17 16 49 49 H 1.09005 * 109.52470 * 297.74861 * 18 17 16 50 50 H 0.97001 * 120.00048 * 179.97438 * 24 23 21 51 51 H 1.09003 * 109.46606 * 294.16956 * 29 15 2 52 52 H 1.09000 * 109.46535 * 54.14475 * 29 15 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 8 2.7296 -1.6965 1.1193 6 7 1.7068 -0.2500 2.4546 7 6 2.1945 -0.9409 3.6508 8 6 3.6666 -0.9414 3.6510 9 7 4.8030 -0.9406 3.6509 10 6 1.6840 -2.3831 3.6506 11 6 2.1940 -3.1048 4.8996 12 6 1.6845 -2.3836 6.1491 13 6 2.1951 -0.9414 6.1493 14 6 1.6852 -0.2191 4.9000 15 7 2.0197 -0.6925 -1.1994 16 6 1.4345 -2.0349 -1.3077 17 6 2.0745 -2.7785 -2.4823 18 6 1.8318 -1.9901 -3.7722 19 6 2.4081 -0.5802 -3.6153 20 1 3.4856 -0.6424 -3.4627 21 6 2.1216 0.2217 -4.8587 22 1 1.5374 1.1278 -4.7942 23 6 2.6052 -0.2014 -6.0786 24 7 3.3161 -1.3050 -6.1573 25 14 2.2494 0.7922 -7.6199 26 1 3.3253 1.7957 -7.8212 27 1 2.1944 -0.1167 -8.7931 28 1 0.9457 1.4873 -7.4708 29 6 1.7585 0.0997 -2.4079 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 1.1488 0.5385 2.5436 34 1 0.5940 -2.3827 3.6504 35 1 2.0473 -2.8970 2.7606 36 1 3.2840 -3.1053 4.8994 37 1 1.8299 -4.1322 4.8996 38 1 2.0475 -2.8980 7.0389 39 1 0.5945 -2.3832 6.1493 40 1 3.2851 -0.9418 6.1491 41 1 1.8318 -0.4274 7.0392 42 1 2.0493 0.8083 4.8999 43 1 0.5951 -0.2183 4.9001 44 1 1.6177 -2.5865 -0.3856 45 1 0.3604 -1.9508 -1.4730 46 1 3.1466 -2.8754 -2.3111 47 1 1.6292 -3.7695 -2.5717 48 1 2.3230 -2.4938 -4.6049 49 1 0.7608 -1.9266 -3.9644 50 1 3.6560 -1.6029 -7.0155 51 1 0.6829 0.1739 -2.5681 52 1 2.1771 1.0986 -2.2849 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595609576.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:55:15 Heat of formation + Delta-G solvation = -17.982423 kcal Electronic energy + Delta-G solvation = -30161.163500 eV Core-core repulsion = 26352.907657 eV Total energy + Delta-G solvation = -3808.255843 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.93691 -39.20681 -37.56356 -35.86160 -34.53696 -34.22463 -32.22865 -31.31346 -30.28516 -29.82368 -28.63059 -25.05386 -24.91049 -23.75512 -23.34322 -22.11455 -21.53823 -21.10873 -19.81605 -18.32356 -17.65260 -17.14672 -16.41286 -16.32153 -15.38121 -15.18078 -14.99201 -14.74601 -14.37786 -14.14930 -13.95563 -13.77075 -13.63436 -13.44542 -13.34307 -12.88395 -12.70050 -12.63388 -12.49861 -12.33696 -12.23903 -12.07785 -12.00183 -11.70869 -11.69503 -11.55194 -11.27497 -11.07529 -10.93060 -10.91725 -10.71420 -10.63878 -10.56129 -10.01027 -9.76519 -9.62633 -9.44067 -9.37357 -8.91405 -8.65111 -8.26043 -7.60814 -5.93723 -4.00442 2.31111 2.62533 2.69487 3.21141 3.32529 3.39305 3.41386 3.66146 4.17620 4.27008 4.36443 4.50012 4.55504 4.63476 4.68165 4.85738 4.98948 5.00717 5.10013 5.14917 5.19281 5.31978 5.36122 5.39153 5.55125 5.58097 5.65151 5.67404 5.70119 5.80551 5.86243 5.90706 5.96729 5.98343 6.08669 6.13894 6.22642 6.37718 6.44303 6.57124 6.80719 6.86521 6.99803 7.22546 7.29872 7.45187 7.49204 7.69932 7.77626 7.83094 8.13182 8.20048 8.24332 8.51020 9.03808 9.63587 11.12092 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.027015 B = 0.002540 C = 0.002509 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1036.199036 B =11020.333999 C =11159.010760 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.065 3.935 3 H 0.104 0.896 4 C 0.521 3.479 5 O -0.499 6.499 6 N -0.731 5.731 7 C 0.283 3.717 8 C 0.207 3.793 9 N -0.415 5.415 10 C -0.128 4.128 11 C -0.122 4.122 12 C -0.122 4.122 13 C -0.121 4.121 14 C -0.118 4.118 15 N -0.515 5.515 16 C 0.059 3.941 17 C -0.115 4.115 18 C -0.110 4.110 19 C 0.056 3.944 20 H 0.034 0.966 21 C -0.515 4.515 22 H 0.053 0.947 23 C 0.063 3.937 24 N -0.887 5.887 25 Si 0.890 3.110 26 H -0.281 1.281 27 H -0.287 1.287 28 H -0.275 1.275 29 C 0.069 3.931 30 H 0.073 0.927 31 H 0.065 0.935 32 H 0.059 0.941 33 H 0.407 0.593 34 H 0.084 0.916 35 H 0.095 0.905 36 H 0.062 0.938 37 H 0.073 0.927 38 H 0.066 0.934 39 H 0.068 0.932 40 H 0.064 0.936 41 H 0.075 0.925 42 H 0.079 0.921 43 H 0.092 0.908 44 H 0.074 0.926 45 H 0.022 0.978 46 H 0.060 0.940 47 H 0.044 0.956 48 H 0.090 0.910 49 H 0.029 0.971 50 H 0.259 0.741 51 H 0.023 0.977 52 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.950 0.869 25.244 27.149 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C -0.048 4.048 3 H 0.122 0.878 4 C 0.307 3.693 5 O -0.370 6.370 6 N -0.387 5.387 7 C 0.193 3.807 8 C -0.113 4.113 9 N -0.091 5.091 10 C -0.167 4.167 11 C -0.160 4.160 12 C -0.159 4.159 13 C -0.159 4.159 14 C -0.157 4.157 15 N -0.239 5.239 16 C -0.069 4.069 17 C -0.153 4.153 18 C -0.148 4.148 19 C 0.037 3.963 20 H 0.052 0.948 21 C -0.553 4.553 22 H 0.071 0.929 23 C -0.139 4.139 24 N -0.525 5.525 25 Si 0.718 3.282 26 H -0.207 1.207 27 H -0.213 1.213 28 H -0.200 1.200 29 C -0.058 4.058 30 H 0.092 0.908 31 H 0.084 0.916 32 H 0.078 0.922 33 H 0.243 0.757 34 H 0.102 0.898 35 H 0.114 0.886 36 H 0.081 0.919 37 H 0.092 0.908 38 H 0.085 0.915 39 H 0.087 0.913 40 H 0.082 0.918 41 H 0.094 0.906 42 H 0.097 0.903 43 H 0.110 0.890 44 H 0.092 0.908 45 H 0.040 0.960 46 H 0.079 0.921 47 H 0.063 0.937 48 H 0.108 0.892 49 H 0.047 0.953 50 H 0.069 0.931 51 H 0.042 0.958 52 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -7.100 -0.030 25.007 25.996 hybrid contribution -1.667 1.099 -1.034 2.248 sum -8.767 1.069 23.973 25.549 Atomic orbital electron populations 1.22427 0.95680 1.03140 1.02911 1.21626 0.93887 0.98912 0.90329 0.87816 1.20931 0.79614 0.84738 0.83987 1.90692 1.35300 1.25150 1.85874 1.46221 1.55123 1.33019 1.04336 1.17621 0.80960 0.95379 0.86725 1.29167 0.95012 0.93621 0.93478 1.81177 1.12799 1.07609 1.07473 1.22016 1.01627 0.92446 1.00620 1.21574 1.01159 0.99579 0.93702 1.21596 1.01103 0.95156 0.98077 1.21562 1.01266 0.96064 0.96968 1.21844 1.02353 0.99505 0.91986 1.61930 1.58096 1.02856 1.01017 1.22180 0.95168 0.89630 0.99874 1.21638 1.00667 0.97152 0.95842 1.21653 0.98816 0.98381 0.95971 1.18654 0.96185 0.91712 0.89778 0.94768 1.21127 1.33449 1.08706 0.92065 0.92873 1.24941 0.95049 0.95046 0.98827 1.69900 1.35661 1.22061 1.24926 0.86638 0.78576 0.79998 0.83001 1.20746 1.21300 1.20049 1.22367 0.97946 0.96157 0.89317 0.90832 0.91607 0.92198 0.75738 0.89785 0.88632 0.91943 0.90815 0.91541 0.91288 0.91767 0.90621 0.90276 0.88954 0.90805 0.96038 0.92081 0.93724 0.89196 0.95259 0.93059 0.95850 0.92356 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.98 8.34 37.16 0.31 -1.67 16 2 C 0.07 0.90 2.73 -68.86 -0.19 0.71 16 3 H 0.10 1.32 7.98 -51.93 -0.41 0.90 16 4 C 0.52 6.99 6.24 -10.98 -0.07 6.92 16 5 O -0.50 -8.73 11.55 5.56 0.06 -8.66 16 6 N -0.73 -6.51 4.98 -50.23 -0.25 -6.76 16 7 C 0.28 2.49 0.77 -134.61 -0.10 2.39 16 8 C 0.21 2.69 10.26 -20.74 -0.21 2.48 16 9 N -0.41 -6.66 18.54 42.17 0.78 -5.88 16 10 C -0.13 -1.11 4.64 -26.74 -0.12 -1.24 16 11 C -0.12 -0.92 5.70 -26.73 -0.15 -1.07 16 12 C -0.12 -0.65 5.92 -26.73 -0.16 -0.81 16 13 C -0.12 -0.65 5.70 -26.71 -0.15 -0.80 16 14 C -0.12 -0.61 4.83 -26.71 -0.13 -0.74 16 15 N -0.52 -9.58 4.34 -228.08 -0.99 -10.57 16 16 C 0.06 1.08 4.35 -3.83 -0.02 1.07 16 17 C -0.12 -2.41 6.09 -26.65 -0.16 -2.57 16 18 C -0.11 -2.66 5.02 -26.61 -0.13 -2.80 16 19 C 0.06 1.40 2.26 -91.69 -0.21 1.20 16 20 H 0.03 0.98 8.14 -51.93 -0.42 0.56 16 21 C -0.51 -14.09 8.56 -34.44 -0.29 -14.39 16 22 H 0.05 1.42 7.74 -52.49 -0.41 1.01 16 23 C 0.06 1.75 5.30 -17.82 -0.09 1.65 16 24 N -0.89 -25.71 11.35 55.43 0.63 -25.08 16 25 Si 0.89 21.33 29.54 -169.99 -5.02 16.31 16 26 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 27 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 28 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 29 C 0.07 1.42 4.36 -3.84 -0.02 1.41 16 30 H 0.07 0.88 6.82 -51.93 -0.35 0.52 16 31 H 0.06 0.76 6.46 -51.93 -0.34 0.42 16 32 H 0.06 0.43 7.56 -51.93 -0.39 0.04 16 33 H 0.41 2.20 7.89 -40.82 -0.32 1.88 16 34 H 0.08 0.57 8.14 -51.93 -0.42 0.14 16 35 H 0.10 1.16 6.17 -51.93 -0.32 0.84 16 36 H 0.06 0.60 7.23 -51.93 -0.38 0.22 16 37 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 38 H 0.07 0.33 8.14 -51.93 -0.42 -0.10 16 39 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 40 H 0.06 0.47 7.23 -51.93 -0.38 0.09 16 41 H 0.08 0.29 8.14 -51.93 -0.42 -0.14 16 42 H 0.08 0.36 8.14 -51.93 -0.42 -0.07 16 43 H 0.09 0.27 8.14 -51.93 -0.42 -0.15 16 44 H 0.07 1.34 5.80 -51.93 -0.30 1.04 16 45 H 0.02 0.38 6.58 -51.93 -0.34 0.04 16 46 H 0.06 1.38 8.14 -51.93 -0.42 0.96 16 47 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 48 H 0.09 2.44 6.15 -51.93 -0.32 2.12 16 49 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 50 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 51 H 0.02 0.47 6.88 -51.93 -0.36 0.11 16 52 H 0.06 1.18 8.01 -51.93 -0.42 0.77 16 LS Contribution 389.08 15.07 5.86 5.86 Total: -1.00 -33.54 389.08 -9.64 -43.18 By element: Atomic # 1 Polarization: 8.65 SS G_CDS: -8.82 Total: -0.17 kcal Atomic # 6 Polarization: -6.34 SS G_CDS: -1.91 Total: -8.25 kcal Atomic # 7 Polarization: -48.45 SS G_CDS: 0.17 Total: -48.28 kcal Atomic # 8 Polarization: -8.73 SS G_CDS: 0.06 Total: -8.66 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -33.54 -9.64 -43.18 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595609576.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.202 kcal (2) G-P(sol) polarization free energy of solvation -33.540 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.338 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.645 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.185 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.982 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds