Wall clock time and date at job start Tue Mar 31 2020 17:55:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46801 * 2 1 4 4 C 1.50699 * 109.46866 * 119.99935 * 2 1 3 5 5 O 1.21280 * 120.00255 * 119.99948 * 4 2 1 6 6 N 1.34779 * 120.00378 * 299.99920 * 4 2 1 7 7 C 1.46497 * 120.00488 * 179.97438 * 6 4 2 8 8 C 1.47206 * 109.46675 * 60.00126 * 7 6 4 9 9 N 4.99258 * 130.96267 * 104.44703 * 2 1 3 10 10 C 1.52997 * 109.47389 * 300.00288 * 7 6 4 11 11 C 1.52993 * 109.47024 * 179.97438 * 10 7 6 12 12 C 1.53002 * 109.47392 * 60.00071 * 11 10 7 13 13 C 1.52997 * 109.46978 * 299.99957 * 12 11 10 14 14 C 1.52997 * 109.47188 * 179.97438 * 7 6 4 15 15 N 1.46898 * 109.47006 * 239.99936 * 2 1 3 16 16 C 1.46846 * 110.99901 * 306.04838 * 15 2 1 17 17 C 1.53040 * 109.51996 * 185.84350 * 16 15 2 18 18 C 1.53116 * 109.27629 * 300.81684 * 17 16 15 19 19 C 1.53114 * 109.15955 * 57.65897 * 18 17 16 20 20 H 1.09000 * 109.50286 * 62.32566 * 19 18 17 21 21 C 1.50699 * 109.50375 * 182.40417 * 19 18 17 22 22 H 1.07995 * 120.00315 * 119.99782 * 21 19 18 23 23 C 1.37884 * 119.99873 * 299.99779 * 21 19 18 24 24 N 1.31513 * 120.00083 * 0.02562 * 23 21 19 25 25 Si 1.86803 * 120.00026 * 179.97438 * 23 21 19 26 26 H 1.48497 * 109.46836 * 90.00238 * 25 23 21 27 27 H 1.48502 * 109.47043 * 210.00144 * 25 23 21 28 28 H 1.48498 * 109.47147 * 330.00112 * 25 23 21 29 29 C 1.46840 * 110.99930 * 70.25839 * 15 2 1 30 30 H 1.09001 * 109.47002 * 59.99846 * 1 2 3 31 31 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.47050 * 300.00112 * 1 2 3 33 33 H 0.97003 * 119.99556 * 0.02562 * 6 4 2 34 34 H 1.09002 * 109.46777 * 300.00110 * 10 7 6 35 35 H 1.09000 * 109.47140 * 59.99537 * 10 7 6 36 36 H 1.09002 * 109.47722 * 299.99886 * 11 10 7 37 37 H 1.09004 * 109.46862 * 179.97438 * 11 10 7 38 38 H 1.08998 * 109.47387 * 179.97438 * 12 11 10 39 39 H 1.09002 * 109.47097 * 59.99758 * 12 11 10 40 40 H 1.09002 * 109.47045 * 299.99833 * 13 12 11 41 41 H 1.09000 * 109.47140 * 179.97438 * 13 12 11 42 42 H 1.09004 * 109.47261 * 300.00255 * 14 7 6 43 43 H 1.09002 * 109.47153 * 60.00427 * 14 7 6 44 44 H 1.09002 * 109.46093 * 305.85435 * 16 15 2 45 45 H 1.08993 * 109.46918 * 65.82376 * 16 15 2 46 46 H 1.09002 * 109.50707 * 60.76471 * 17 16 15 47 47 H 1.09003 * 109.50047 * 180.84107 * 17 16 15 48 48 H 1.09002 * 109.52150 * 177.56273 * 18 17 16 49 49 H 1.09005 * 109.52470 * 297.74861 * 18 17 16 50 50 H 0.97001 * 120.00048 * 179.97438 * 24 23 21 51 51 H 1.09003 * 109.46606 * 294.16956 * 29 15 2 52 52 H 1.09000 * 109.46535 * 54.14475 * 29 15 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 8 2.7296 -1.6965 1.1193 6 7 1.7068 -0.2500 2.4546 7 6 2.1945 -0.9409 3.6508 8 6 3.6666 -0.9414 3.6510 9 7 4.8030 -0.9406 3.6509 10 6 1.6840 -2.3831 3.6506 11 6 2.1940 -3.1048 4.8996 12 6 1.6845 -2.3836 6.1491 13 6 2.1951 -0.9414 6.1493 14 6 1.6852 -0.2191 4.9000 15 7 2.0197 -0.6925 -1.1994 16 6 1.4345 -2.0349 -1.3077 17 6 2.0745 -2.7785 -2.4823 18 6 1.8318 -1.9901 -3.7722 19 6 2.4081 -0.5802 -3.6153 20 1 3.4856 -0.6424 -3.4627 21 6 2.1216 0.2217 -4.8587 22 1 1.5374 1.1278 -4.7942 23 6 2.6052 -0.2014 -6.0786 24 7 3.3161 -1.3050 -6.1573 25 14 2.2494 0.7922 -7.6199 26 1 3.3253 1.7957 -7.8212 27 1 2.1944 -0.1167 -8.7931 28 1 0.9457 1.4873 -7.4708 29 6 1.7585 0.0997 -2.4079 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 1.1488 0.5385 2.5436 34 1 0.5940 -2.3827 3.6504 35 1 2.0473 -2.8970 2.7606 36 1 3.2840 -3.1053 4.8994 37 1 1.8299 -4.1322 4.8996 38 1 2.0475 -2.8980 7.0389 39 1 0.5945 -2.3832 6.1493 40 1 3.2851 -0.9418 6.1491 41 1 1.8318 -0.4274 7.0392 42 1 2.0493 0.8083 4.8999 43 1 0.5951 -0.2183 4.9001 44 1 1.6177 -2.5865 -0.3856 45 1 0.3604 -1.9508 -1.4730 46 1 3.1466 -2.8754 -2.3111 47 1 1.6292 -3.7695 -2.5717 48 1 2.3230 -2.4938 -4.6049 49 1 0.7608 -1.9266 -3.9644 50 1 3.6560 -1.6029 -7.0155 51 1 0.6829 0.1739 -2.5681 52 1 2.1771 1.0986 -2.2849 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595609576.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:55:14 Heat of formation + Delta-G solvation = -40.917013 kcal Electronic energy + Delta-G solvation = -30162.158019 eV Core-core repulsion = 26352.907657 eV Total energy + Delta-G solvation = -3809.250361 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -41.85677 -40.30374 -38.84319 -36.87480 -35.91569 -35.39121 -33.99421 -31.82615 -31.70896 -31.23179 -29.70242 -26.91245 -26.13513 -24.60894 -23.91872 -23.45344 -23.26107 -21.86790 -20.84804 -20.01744 -18.70736 -18.23130 -17.99008 -17.22726 -16.78160 -16.39761 -16.12238 -15.61577 -15.56465 -15.44310 -15.21103 -14.97687 -14.69452 -14.50916 -14.34096 -14.20193 -14.02697 -13.90081 -13.57414 -13.38353 -13.28069 -13.14941 -13.05720 -12.85759 -12.81230 -12.72006 -12.69311 -12.49462 -12.25106 -12.07425 -11.80405 -11.62881 -11.58149 -11.45329 -11.39892 -11.26054 -10.98920 -10.65505 -10.47133 -10.33042 -10.26792 -9.01435 -8.06249 -6.21389 1.36539 1.42335 1.42635 1.53009 1.61147 1.71989 2.25344 2.44402 2.84738 3.14073 3.20752 3.58747 3.66515 3.79593 4.07453 4.09640 4.13812 4.21305 4.21495 4.28302 4.35939 4.43506 4.46054 4.52334 4.64348 4.69290 4.71953 4.80145 4.85702 4.87665 4.89421 4.96413 5.02586 5.12433 5.15357 5.17714 5.19490 5.20692 5.31214 5.33200 5.37555 5.39586 5.40884 5.51499 5.53144 5.64714 5.96984 6.13489 6.22725 6.27091 6.46817 6.48270 6.61057 6.92885 7.26969 7.46956 8.98616 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.027015 B = 0.002540 C = 0.002509 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1036.199036 B =11020.333999 C =11159.010760 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.061 3.939 3 H 0.117 0.883 4 C 0.522 3.478 5 O -0.547 6.547 6 N -0.706 5.706 7 C 0.279 3.721 8 C 0.226 3.774 9 N -0.483 5.483 10 C -0.124 4.124 11 C -0.122 4.122 12 C -0.116 4.116 13 C -0.122 4.122 14 C -0.111 4.111 15 N -0.541 5.541 16 C 0.072 3.928 17 C -0.111 4.111 18 C -0.100 4.100 19 C 0.051 3.949 20 H -0.016 1.016 21 C -0.531 4.531 22 H 0.059 0.941 23 C 0.009 3.991 24 N -0.920 5.920 25 Si 0.957 3.043 26 H -0.278 1.278 27 H -0.286 1.286 28 H -0.262 1.262 29 C 0.086 3.914 30 H 0.064 0.936 31 H 0.060 0.940 32 H 0.106 0.894 33 H 0.429 0.571 34 H 0.116 0.884 35 H 0.056 0.944 36 H 0.029 0.971 37 H 0.079 0.921 38 H 0.068 0.932 39 H 0.095 0.905 40 H 0.035 0.965 41 H 0.101 0.899 42 H 0.090 0.910 43 H 0.132 0.868 44 H 0.079 0.921 45 H 0.039 0.961 46 H 0.032 0.968 47 H 0.064 0.936 48 H 0.053 0.947 49 H 0.031 0.969 50 H 0.259 0.741 51 H 0.034 0.966 52 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.844 2.770 27.554 30.960 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.051 4.051 3 H 0.135 0.865 4 C 0.309 3.691 5 O -0.422 6.422 6 N -0.363 5.363 7 C 0.189 3.811 8 C -0.093 4.093 9 N -0.159 5.159 10 C -0.164 4.164 11 C -0.161 4.161 12 C -0.154 4.154 13 C -0.160 4.160 14 C -0.150 4.150 15 N -0.265 5.265 16 C -0.056 4.056 17 C -0.148 4.148 18 C -0.139 4.139 19 C 0.032 3.968 20 H 0.002 0.998 21 C -0.569 4.569 22 H 0.077 0.923 23 C -0.189 4.189 24 N -0.560 5.560 25 Si 0.783 3.217 26 H -0.204 1.204 27 H -0.212 1.212 28 H -0.186 1.186 29 C -0.041 4.041 30 H 0.083 0.917 31 H 0.079 0.921 32 H 0.125 0.875 33 H 0.269 0.731 34 H 0.134 0.866 35 H 0.075 0.925 36 H 0.048 0.952 37 H 0.098 0.902 38 H 0.087 0.913 39 H 0.113 0.887 40 H 0.054 0.946 41 H 0.120 0.880 42 H 0.109 0.891 43 H 0.150 0.850 44 H 0.098 0.902 45 H 0.057 0.943 46 H 0.051 0.949 47 H 0.082 0.918 48 H 0.072 0.928 49 H 0.049 0.951 50 H 0.068 0.932 51 H 0.052 0.948 52 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -11.032 1.921 27.364 29.566 hybrid contribution -0.396 0.470 -1.698 1.805 sum -11.429 2.391 25.666 28.197 Atomic orbital electron populations 1.22367 0.92615 1.03424 1.04831 1.21760 0.96293 0.98785 0.88227 0.86548 1.20903 0.79017 0.84050 0.85152 1.90702 1.37529 1.27336 1.86657 1.45940 1.54180 1.33239 1.02952 1.18141 0.78339 0.96412 0.88208 1.30161 0.96084 0.91618 0.91436 1.81170 1.15123 1.09886 1.09761 1.21995 1.03280 0.91781 0.99308 1.21579 0.99212 1.00460 0.94804 1.21592 1.02533 0.94708 0.96537 1.21601 0.99629 0.96514 0.98249 1.21964 1.04584 0.99263 0.89146 1.61715 1.59797 1.03072 1.01939 1.22014 0.95604 0.89454 0.98490 1.21560 0.99395 0.98284 0.95609 1.21439 0.98072 0.97999 0.96352 1.18590 0.93631 0.92836 0.91729 0.99759 1.21528 1.33286 1.09033 0.93081 0.92275 1.25806 0.94897 0.96049 1.02194 1.70077 1.36696 1.23686 1.25516 0.85571 0.78859 0.78430 0.78865 1.20408 1.21189 1.18643 1.21979 0.97805 0.95714 0.88593 0.91652 0.92092 0.87541 0.73108 0.86617 0.92473 0.95167 0.90204 0.91290 0.88663 0.94631 0.88044 0.89139 0.84952 0.90234 0.94312 0.94912 0.91774 0.92846 0.95057 0.93233 0.94760 0.92193 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.05 8.34 71.98 0.60 -2.45 16 2 C 0.06 1.55 2.73 44.17 0.12 1.67 16 3 H 0.12 2.64 7.98 -2.39 -0.02 2.62 16 4 C 0.52 13.12 6.24 87.66 0.55 13.67 16 5 O -0.55 -19.29 11.55 -3.03 -0.04 -19.33 16 6 N -0.71 -10.26 4.98 -431.21 -2.15 -12.41 16 7 C 0.28 4.26 0.77 1.80 0.00 4.26 16 8 C 0.23 5.92 10.26 89.44 0.92 6.83 16 9 N -0.48 -16.30 18.54 20.01 0.37 -15.93 16 10 C -0.12 -1.93 4.64 30.59 0.14 -1.79 16 11 C -0.12 -1.71 5.70 30.59 0.17 -1.54 16 12 C -0.12 -0.87 5.92 30.59 0.18 -0.69 16 13 C -0.12 -0.93 5.70 30.61 0.17 -0.75 16 14 C -0.11 -0.65 4.83 30.61 0.15 -0.50 16 15 N -0.54 -19.95 4.34 -875.51 -3.80 -23.74 16 16 C 0.07 2.61 4.35 86.33 0.38 2.98 16 17 C -0.11 -4.77 6.09 30.65 0.19 -4.58 16 18 C -0.10 -5.04 5.02 30.67 0.15 -4.89 16 19 C 0.05 2.68 2.26 -11.49 -0.03 2.65 16 20 H -0.02 -0.97 8.14 -2.39 -0.02 -0.99 16 21 C -0.53 -29.62 8.56 25.60 0.22 -29.40 16 22 H 0.06 3.15 7.74 -2.91 -0.02 3.13 16 23 C 0.01 0.50 5.30 84.66 0.45 0.95 16 24 N -0.92 -55.50 11.35 21.45 0.24 -55.26 16 25 Si 0.96 44.22 29.54 68.60 2.03 46.24 16 26 H -0.28 -12.63 7.11 99.48 0.71 -11.93 16 27 H -0.29 -13.07 7.11 99.48 0.71 -12.36 16 28 H -0.26 -11.47 7.11 99.48 0.71 -10.76 16 29 C 0.09 3.56 4.36 86.33 0.38 3.94 16 30 H 0.06 1.31 6.82 -2.39 -0.02 1.29 16 31 H 0.06 1.17 6.46 -2.39 -0.02 1.15 16 32 H 0.11 0.88 7.56 -2.39 -0.02 0.86 16 33 H 0.43 2.42 7.89 -92.71 -0.73 1.69 16 34 H 0.12 1.06 8.14 -2.39 -0.02 1.04 16 35 H 0.06 1.38 6.17 -2.39 -0.01 1.36 16 36 H 0.03 0.61 7.23 -2.39 -0.02 0.59 16 37 H 0.08 0.99 8.14 -2.38 -0.02 0.97 16 38 H 0.07 0.51 8.14 -2.39 -0.02 0.49 16 39 H 0.09 0.28 8.14 -2.39 -0.02 0.26 16 40 H 0.03 0.48 7.23 -2.39 -0.02 0.47 16 41 H 0.10 0.31 8.14 -2.39 -0.02 0.29 16 42 H 0.09 0.40 8.14 -2.38 -0.02 0.38 16 43 H 0.13 -0.16 8.14 -2.39 -0.02 -0.18 16 44 H 0.08 2.86 5.80 -2.39 -0.01 2.84 16 45 H 0.04 1.28 6.58 -2.39 -0.02 1.26 16 46 H 0.03 1.56 8.14 -2.39 -0.02 1.54 16 47 H 0.06 2.46 8.14 -2.39 -0.02 2.44 16 48 H 0.05 3.06 6.15 -2.39 -0.01 3.04 16 49 H 0.03 1.51 8.14 -2.38 -0.02 1.49 16 50 H 0.26 14.86 8.31 -92.71 -0.77 14.09 16 51 H 0.03 1.34 6.88 -2.39 -0.02 1.32 16 52 H 0.06 2.41 8.01 -2.39 -0.02 2.39 16 Total: -1.00 -80.85 389.08 1.59 -79.27 By element: Atomic # 1 Polarization: 10.62 SS G_CDS: 0.18 Total: 10.81 kcal Atomic # 6 Polarization: -14.38 SS G_CDS: 4.74 Total: -9.64 kcal Atomic # 7 Polarization: -102.01 SS G_CDS: -5.33 Total: -107.34 kcal Atomic # 8 Polarization: -19.29 SS G_CDS: -0.04 Total: -19.33 kcal Atomic # 14 Polarization: 44.22 SS G_CDS: 2.03 Total: 46.24 kcal Total: -80.85 1.59 -79.27 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595609576.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.348 kcal (2) G-P(sol) polarization free energy of solvation -80.852 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.503 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.586 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.265 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.917 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds