Wall clock time and date at job start Tue Mar 31 2020 17:19:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08995 * 109.47649 * 2 1 4 4 C 1.53002 * 109.46687 * 119.99877 * 2 1 3 5 5 C 1.50706 * 109.47153 * 294.99260 * 4 2 1 6 6 H 1.07998 * 119.99503 * 0.02562 * 5 4 2 7 7 C 1.37871 * 120.00434 * 180.02562 * 5 4 2 8 8 N 1.31516 * 119.99826 * 359.72891 * 7 5 4 9 9 Si 1.86800 * 120.00406 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.47364 * 179.72558 * 9 7 5 11 11 H 1.48508 * 109.46883 * 299.72681 * 9 7 5 12 12 H 1.48497 * 109.46870 * 59.72491 * 9 7 5 13 13 C 1.53005 * 109.47080 * 239.99305 * 2 1 3 14 14 N 1.46494 * 109.46777 * 65.00298 * 13 2 1 15 15 C 1.39045 * 119.99670 * 179.97438 * 14 13 2 16 16 C 1.39221 * 119.93244 * 359.72774 * 15 14 13 17 17 C 1.37606 * 120.06863 * 179.72613 * 16 15 14 18 18 C 1.39800 * 119.93284 * 0.56875 * 17 16 15 19 19 C 1.47520 * 120.07139 * 179.68540 * 18 17 16 20 20 O 1.21593 * 119.99612 * 180.02562 * 19 18 17 21 21 N 1.34774 * 119.99612 * 0.02562 * 19 18 17 22 22 C 1.46505 * 119.99641 * 179.97438 * 21 19 18 23 23 C 1.53001 * 109.47131 * 180.02562 * 22 21 19 24 24 N 1.46897 * 109.46976 * 180.02562 * 23 22 21 25 25 C 1.46895 * 111.00500 * 66.04451 * 24 23 22 26 26 C 1.46903 * 110.99901 * 189.99927 * 24 23 22 27 27 C 1.39800 * 119.86071 * 359.70462 * 18 17 16 28 28 C 1.37614 * 119.92628 * 0.02562 * 27 18 17 29 29 H 1.09000 * 109.46932 * 300.00791 * 1 2 3 30 30 H 1.09001 * 109.46866 * 60.00233 * 1 2 3 31 31 H 1.09000 * 109.47309 * 180.02562 * 1 2 3 32 32 H 1.09004 * 109.47178 * 175.00050 * 4 2 1 33 33 H 1.08993 * 109.47411 * 54.99732 * 4 2 1 34 34 H 0.97000 * 120.00236 * 0.27947 * 8 7 5 35 35 H 1.08997 * 109.46867 * 185.00573 * 13 2 1 36 36 H 1.09001 * 109.46919 * 305.00269 * 13 2 1 37 37 H 0.96998 * 120.00823 * 0.02562 * 14 13 2 38 38 H 1.07995 * 119.96355 * 0.02562 * 16 15 14 39 39 H 1.07997 * 120.03671 * 180.27388 * 17 16 15 40 40 H 0.96995 * 120.00528 * 0.02562 * 21 19 18 41 41 H 1.09000 * 109.47029 * 300.00604 * 22 21 19 42 42 H 1.09002 * 109.46669 * 60.00424 * 22 21 19 43 43 H 1.08997 * 109.46545 * 300.00133 * 23 22 21 44 44 H 1.08999 * 109.46690 * 60.00210 * 23 22 21 45 45 H 1.08996 * 109.47328 * 59.99860 * 25 24 23 46 46 H 1.09000 * 109.47457 * 180.02562 * 25 24 23 47 47 H 1.09001 * 109.47036 * 299.99920 * 25 24 23 48 48 H 1.08995 * 109.46883 * 60.00188 * 26 24 23 49 49 H 1.09000 * 109.47027 * 179.97438 * 26 24 23 50 50 H 1.08994 * 109.46844 * 299.99755 * 26 24 23 51 51 H 1.07991 * 120.03713 * 179.97438 * 27 18 17 52 52 H 1.08002 * 119.96141 * 179.97438 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7213 1.2493 5 6 1.6413 0.0572 2.4766 6 1 1.0801 0.9744 2.3756 7 6 1.9931 -0.4014 3.7283 8 7 2.6720 -1.5211 3.8516 9 14 1.4984 0.5631 5.2497 10 1 1.9882 -0.1399 6.4625 11 1 2.0952 1.9217 5.1901 12 1 0.0187 0.6744 5.3057 13 6 2.0400 -0.7214 -1.2492 14 7 1.6525 0.0351 -2.4423 15 6 2.0074 -0.4277 -3.7045 16 6 2.7359 -1.6071 -3.8325 17 6 3.0838 -2.0707 -5.0806 18 6 2.7152 -1.3497 -6.2202 19 6 3.0925 -1.8402 -7.5594 20 8 2.7716 -1.2117 -8.5496 21 7 3.7929 -2.9847 -7.6850 22 6 4.1671 -3.4722 -9.0150 23 6 4.9497 -4.7797 -8.8774 24 7 5.3255 -5.2680 -10.2109 25 6 6.2793 -4.3561 -10.8561 26 6 5.8672 -6.6316 -10.1387 27 6 1.9886 -0.1627 -6.0881 28 6 1.6389 0.2927 -4.8375 29 1 -0.3633 0.5140 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 3.1263 -0.7995 1.2057 33 1 1.6053 -1.7197 1.2953 34 1 2.9286 -2.0221 3.0617 35 1 3.1263 -0.7997 -1.2054 36 1 1.6053 -1.7200 -1.2950 37 1 1.1490 0.8592 -2.3518 38 1 3.0241 -2.1614 -2.9516 39 1 3.6451 -2.9880 -5.1795 40 1 4.0485 -3.4862 -6.8951 41 1 3.2670 -3.6480 -9.6040 42 1 4.7878 -2.7275 -9.5134 43 1 5.8497 -4.6040 -8.2882 44 1 4.3286 -5.5240 -8.3791 45 1 7.1790 -4.2798 -10.2456 46 1 6.5403 -4.7412 -11.8419 47 1 5.8261 -3.3702 -10.9599 48 1 5.1143 -7.3000 -9.7211 49 1 6.1369 -6.9688 -11.1396 50 1 6.7519 -6.6378 -9.5022 51 1 1.7027 0.3968 -6.9665 52 1 1.0779 1.2099 -4.7347 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602721934.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:19:31 Heat of formation + Delta-G solvation = -25.689784 kcal Electronic energy + Delta-G solvation = -27126.871772 eV Core-core repulsion = 23318.281713 eV Total energy + Delta-G solvation = -3808.590059 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.29927 -39.03235 -38.02243 -36.73724 -34.89427 -34.29008 -32.31166 -31.16700 -30.21172 -28.85245 -28.08701 -26.67482 -26.11892 -24.60296 -23.17705 -23.10585 -21.90343 -21.60517 -20.39263 -19.63733 -18.12956 -17.17691 -16.91739 -16.55107 -16.27799 -15.64329 -15.27829 -15.19129 -15.10572 -14.82039 -14.58624 -13.99844 -13.88670 -13.78456 -13.69453 -13.43847 -13.35554 -13.22778 -12.87448 -12.53550 -12.39106 -12.30076 -12.22129 -11.97566 -11.91513 -11.67432 -11.58224 -11.24201 -11.00473 -10.85646 -10.52199 -10.26082 -10.16132 -10.03258 -9.90943 -9.70949 -9.30615 -9.08631 -8.93251 -8.62033 -8.40146 -7.44641 -6.42657 -4.12416 1.02628 1.38956 2.80915 2.88840 3.39171 3.40519 3.46487 3.59410 3.63495 3.91593 4.34143 4.48637 4.54724 4.67111 4.70264 4.76962 4.86299 4.89965 4.97016 5.08484 5.11830 5.24782 5.25318 5.33061 5.38012 5.38391 5.43501 5.44808 5.51856 5.57724 5.63193 5.68474 5.91581 5.96273 6.12459 6.13628 6.17145 6.21345 6.24999 6.36662 6.43738 6.46146 6.58861 6.72517 6.76437 6.86380 7.22829 7.28070 7.32033 7.39236 7.69327 8.11701 8.11802 8.38042 8.80841 9.59149 10.97712 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.019508 B = 0.001606 C = 0.001503 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1434.990354 B =17433.865995 C =18630.407204 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.090 4.090 3 H 0.064 0.936 4 C 0.017 3.983 5 C -0.599 4.599 6 H 0.050 0.950 7 C 0.015 3.985 8 N -0.912 5.912 9 Si 1.067 2.933 10 H -0.282 1.282 11 H -0.288 1.288 12 H -0.288 1.288 13 C 0.120 3.880 14 N -0.728 5.728 15 C 0.254 3.746 16 C -0.211 4.211 17 C -0.032 4.032 18 C -0.217 4.217 19 C 0.570 3.430 20 O -0.549 6.549 21 N -0.734 5.734 22 C 0.123 3.877 23 C 0.042 3.958 24 N -0.544 5.544 25 C 0.017 3.983 26 C 0.024 3.976 27 C -0.005 4.005 28 C -0.215 4.215 29 H 0.066 0.934 30 H 0.032 0.968 31 H 0.046 0.954 32 H 0.008 0.992 33 H 0.010 0.990 34 H 0.268 0.732 35 H 0.060 0.940 36 H 0.060 0.940 37 H 0.401 0.599 38 H 0.128 0.872 39 H 0.119 0.881 40 H 0.398 0.602 41 H 0.076 0.924 42 H 0.067 0.933 43 H 0.042 0.958 44 H 0.082 0.918 45 H 0.028 0.972 46 H 0.070 0.930 47 H 0.074 0.926 48 H 0.070 0.930 49 H 0.071 0.929 50 H 0.027 0.973 51 H 0.131 0.869 52 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.486 -5.917 -25.672 26.724 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.109 4.109 3 H 0.083 0.917 4 C -0.020 4.020 5 C -0.637 4.637 6 H 0.068 0.932 7 C -0.189 4.189 8 N -0.548 5.548 9 Si 0.896 3.104 10 H -0.208 1.208 11 H -0.215 1.215 12 H -0.215 1.215 13 C -0.003 4.003 14 N -0.352 5.352 15 C 0.145 3.855 16 C -0.234 4.234 17 C -0.051 4.051 18 C -0.223 4.223 19 C 0.360 3.640 20 O -0.428 6.428 21 N -0.387 5.387 22 C -0.001 4.001 23 C -0.086 4.086 24 N -0.268 5.268 25 C -0.131 4.131 26 C -0.124 4.124 27 C -0.025 4.025 28 C -0.238 4.238 29 H 0.085 0.915 30 H 0.051 0.949 31 H 0.065 0.935 32 H 0.026 0.974 33 H 0.028 0.972 34 H 0.079 0.921 35 H 0.078 0.922 36 H 0.078 0.922 37 H 0.237 0.763 38 H 0.146 0.854 39 H 0.137 0.863 40 H 0.234 0.766 41 H 0.095 0.905 42 H 0.086 0.914 43 H 0.060 0.940 44 H 0.101 0.899 45 H 0.046 0.954 46 H 0.089 0.911 47 H 0.092 0.908 48 H 0.089 0.911 49 H 0.090 0.910 50 H 0.046 0.954 51 H 0.149 0.851 52 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 3.989 -5.609 -24.821 25.758 hybrid contribution 0.651 0.000 -0.688 0.947 sum 4.640 -5.609 -25.509 26.527 Atomic orbital electron populations 1.21721 0.95566 1.01185 1.00473 1.21319 0.95899 0.99793 0.93884 0.91712 1.19204 0.95490 0.95616 0.91707 1.21984 1.39117 1.10412 0.92191 0.93167 1.25829 0.94577 0.97079 1.01407 1.70795 1.35935 1.14567 1.33523 0.83561 0.76079 0.75157 0.75649 1.20767 1.21466 1.21451 1.21750 0.99309 0.95345 0.83935 1.45060 1.59508 1.27722 1.02922 1.18148 0.89947 0.91757 0.85635 1.20608 1.06491 0.98301 0.97997 1.20920 0.95366 0.97313 0.91514 1.19431 1.10599 1.00332 0.91929 1.18210 0.76868 0.79799 0.89108 1.90751 1.55170 1.57224 1.39611 1.45800 1.58027 1.25784 1.09100 1.21240 0.99892 0.94460 0.84467 1.22294 0.99140 0.96882 0.90325 1.61852 1.42285 1.02928 1.19759 1.22513 0.93889 0.97496 0.99201 1.22401 0.98590 0.89398 1.01980 1.20882 0.91691 0.92990 0.96939 1.20554 1.09245 1.02880 0.91130 0.91510 0.94912 0.93476 0.97365 0.97194 0.92148 0.92199 0.92206 0.76320 0.85371 0.86267 0.76649 0.90540 0.91442 0.94000 0.89935 0.95373 0.91089 0.90759 0.91105 0.91036 0.95442 0.85095 0.85692 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.27 8.88 37.16 0.33 -1.94 16 2 C -0.09 -1.65 2.37 -90.62 -0.22 -1.86 16 3 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 4 C 0.02 0.41 3.76 -27.88 -0.10 0.30 16 5 C -0.60 -16.10 8.41 -34.44 -0.29 -16.38 16 6 H 0.05 1.33 7.06 -52.49 -0.37 0.95 16 7 C 0.01 0.42 5.46 -17.82 -0.10 0.32 16 8 N -0.91 -27.09 13.65 55.43 0.76 -26.34 16 9 Si 1.07 24.54 29.90 -169.99 -5.08 19.46 16 10 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 11 H -0.29 -6.34 7.11 56.52 0.40 -5.93 16 12 H -0.29 -6.32 7.11 56.52 0.40 -5.92 16 13 C 0.12 1.81 4.29 -4.04 -0.02 1.80 16 14 N -0.73 -9.47 5.43 -58.64 -0.32 -9.79 16 15 C 0.25 3.22 6.65 -83.86 -0.56 2.66 16 16 C -0.21 -2.53 9.28 -39.45 -0.37 -2.90 16 17 C -0.03 -0.33 9.53 -39.23 -0.37 -0.71 16 18 C -0.22 -2.60 5.88 -104.95 -0.62 -3.22 16 19 C 0.57 7.09 7.76 -12.48 -0.10 6.99 16 20 O -0.55 -8.67 16.34 5.28 0.09 -8.58 16 21 N -0.73 -6.61 5.51 -61.35 -0.34 -6.95 16 22 C 0.12 1.04 5.60 -4.04 -0.02 1.01 16 23 C 0.04 0.27 5.07 -3.83 -0.02 0.25 16 24 N -0.54 -3.65 5.02 -251.27 -1.26 -4.91 16 25 C 0.02 0.10 9.32 60.06 0.56 0.66 16 26 C 0.02 0.13 9.57 60.07 0.57 0.70 16 27 C -0.01 -0.06 9.58 -39.23 -0.38 -0.44 16 28 C -0.22 -2.53 9.87 -39.45 -0.39 -2.92 16 29 H 0.07 1.27 6.95 -51.93 -0.36 0.91 16 30 H 0.03 0.46 7.18 -51.93 -0.37 0.09 16 31 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 32 H 0.01 0.20 8.01 -51.93 -0.42 -0.21 16 33 H 0.01 0.24 8.00 -51.93 -0.42 -0.17 16 34 H 0.27 7.89 7.22 -40.82 -0.29 7.59 16 35 H 0.06 0.92 7.92 -51.93 -0.41 0.51 16 36 H 0.06 0.90 7.94 -51.93 -0.41 0.49 16 37 H 0.40 4.80 7.66 -40.82 -0.31 4.49 16 38 H 0.13 1.49 6.69 -52.49 -0.35 1.14 16 39 H 0.12 0.88 6.39 -52.49 -0.34 0.55 16 40 H 0.40 2.61 6.49 -40.82 -0.26 2.34 16 41 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 42 H 0.07 0.62 6.55 -51.93 -0.34 0.28 16 43 H 0.04 0.25 8.12 -51.93 -0.42 -0.17 16 44 H 0.08 0.46 8.06 -51.93 -0.42 0.05 16 45 H 0.03 0.16 8.14 -51.93 -0.42 -0.27 16 46 H 0.07 0.35 8.12 -51.93 -0.42 -0.07 16 47 H 0.07 0.46 6.47 -51.93 -0.34 0.13 16 48 H 0.07 0.33 8.12 -51.93 -0.42 -0.09 16 49 H 0.07 0.32 8.12 -51.93 -0.42 -0.11 16 50 H 0.03 0.13 8.14 -51.93 -0.42 -0.29 16 51 H 0.13 1.55 7.64 -52.49 -0.40 1.15 16 52 H 0.13 1.25 8.06 -52.49 -0.42 0.83 16 LS Contribution 415.94 15.07 6.27 6.27 Total: -1.00 -32.09 415.94 -10.80 -42.89 By element: Atomic # 1 Polarization: 12.45 SS G_CDS: -8.83 Total: 3.62 kcal Atomic # 6 Polarization: -13.59 SS G_CDS: -2.08 Total: -15.67 kcal Atomic # 7 Polarization: -46.83 SS G_CDS: -1.16 Total: -47.99 kcal Atomic # 8 Polarization: -8.67 SS G_CDS: 0.09 Total: -8.58 kcal Atomic # 14 Polarization: 24.54 SS G_CDS: -5.08 Total: 19.46 kcal Total LS contribution 6.27 Total: 6.27 kcal Total: -32.09 -10.80 -42.89 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602721934.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.197 kcal (2) G-P(sol) polarization free energy of solvation -32.086 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.889 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.801 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.887 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.690 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds