Wall clock time and date at job start Tue Mar 31 2020 17:19:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08995 * 109.47649 * 2 1 4 4 C 1.53002 * 109.46687 * 119.99877 * 2 1 3 5 5 C 1.50706 * 109.47153 * 294.99260 * 4 2 1 6 6 H 1.07998 * 119.99503 * 0.02562 * 5 4 2 7 7 C 1.37871 * 120.00434 * 180.02562 * 5 4 2 8 8 N 1.31516 * 119.99826 * 359.72891 * 7 5 4 9 9 Si 1.86800 * 120.00406 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.47364 * 179.72558 * 9 7 5 11 11 H 1.48508 * 109.46883 * 299.72681 * 9 7 5 12 12 H 1.48497 * 109.46870 * 59.72491 * 9 7 5 13 13 C 1.53005 * 109.47080 * 239.99305 * 2 1 3 14 14 N 1.46494 * 109.46777 * 65.00298 * 13 2 1 15 15 C 1.39045 * 119.99670 * 179.97438 * 14 13 2 16 16 C 1.39221 * 119.93244 * 359.72774 * 15 14 13 17 17 C 1.37606 * 120.06863 * 179.72613 * 16 15 14 18 18 C 1.39800 * 119.93284 * 0.56875 * 17 16 15 19 19 C 1.47520 * 120.07139 * 179.68540 * 18 17 16 20 20 O 1.21593 * 119.99612 * 180.02562 * 19 18 17 21 21 N 1.34774 * 119.99612 * 0.02562 * 19 18 17 22 22 C 1.46505 * 119.99641 * 179.97438 * 21 19 18 23 23 C 1.53001 * 109.47131 * 180.02562 * 22 21 19 24 24 N 1.46897 * 109.46976 * 180.02562 * 23 22 21 25 25 C 1.46895 * 111.00500 * 66.04451 * 24 23 22 26 26 C 1.46903 * 110.99901 * 189.99927 * 24 23 22 27 27 C 1.39800 * 119.86071 * 359.70462 * 18 17 16 28 28 C 1.37614 * 119.92628 * 0.02562 * 27 18 17 29 29 H 1.09000 * 109.46932 * 300.00791 * 1 2 3 30 30 H 1.09001 * 109.46866 * 60.00233 * 1 2 3 31 31 H 1.09000 * 109.47309 * 180.02562 * 1 2 3 32 32 H 1.09004 * 109.47178 * 175.00050 * 4 2 1 33 33 H 1.08993 * 109.47411 * 54.99732 * 4 2 1 34 34 H 0.97000 * 120.00236 * 0.27947 * 8 7 5 35 35 H 1.08997 * 109.46867 * 185.00573 * 13 2 1 36 36 H 1.09001 * 109.46919 * 305.00269 * 13 2 1 37 37 H 0.96998 * 120.00823 * 0.02562 * 14 13 2 38 38 H 1.07995 * 119.96355 * 0.02562 * 16 15 14 39 39 H 1.07997 * 120.03671 * 180.27388 * 17 16 15 40 40 H 0.96995 * 120.00528 * 0.02562 * 21 19 18 41 41 H 1.09000 * 109.47029 * 300.00604 * 22 21 19 42 42 H 1.09002 * 109.46669 * 60.00424 * 22 21 19 43 43 H 1.08997 * 109.46545 * 300.00133 * 23 22 21 44 44 H 1.08999 * 109.46690 * 60.00210 * 23 22 21 45 45 H 1.08996 * 109.47328 * 59.99860 * 25 24 23 46 46 H 1.09000 * 109.47457 * 180.02562 * 25 24 23 47 47 H 1.09001 * 109.47036 * 299.99920 * 25 24 23 48 48 H 1.08995 * 109.46883 * 60.00188 * 26 24 23 49 49 H 1.09000 * 109.47027 * 179.97438 * 26 24 23 50 50 H 1.08994 * 109.46844 * 299.99755 * 26 24 23 51 51 H 1.07991 * 120.03713 * 179.97438 * 27 18 17 52 52 H 1.08002 * 119.96141 * 179.97438 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7213 1.2493 5 6 1.6413 0.0572 2.4766 6 1 1.0801 0.9744 2.3756 7 6 1.9931 -0.4014 3.7283 8 7 2.6720 -1.5211 3.8516 9 14 1.4984 0.5631 5.2497 10 1 1.9882 -0.1399 6.4625 11 1 2.0952 1.9217 5.1901 12 1 0.0187 0.6744 5.3057 13 6 2.0400 -0.7214 -1.2492 14 7 1.6525 0.0351 -2.4423 15 6 2.0074 -0.4277 -3.7045 16 6 2.7359 -1.6071 -3.8325 17 6 3.0838 -2.0707 -5.0806 18 6 2.7152 -1.3497 -6.2202 19 6 3.0925 -1.8402 -7.5594 20 8 2.7716 -1.2117 -8.5496 21 7 3.7929 -2.9847 -7.6850 22 6 4.1671 -3.4722 -9.0150 23 6 4.9497 -4.7797 -8.8774 24 7 5.3255 -5.2680 -10.2109 25 6 6.2793 -4.3561 -10.8561 26 6 5.8672 -6.6316 -10.1387 27 6 1.9886 -0.1627 -6.0881 28 6 1.6389 0.2927 -4.8375 29 1 -0.3633 0.5140 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 3.1263 -0.7995 1.2057 33 1 1.6053 -1.7197 1.2953 34 1 2.9286 -2.0221 3.0617 35 1 3.1263 -0.7997 -1.2054 36 1 1.6053 -1.7200 -1.2950 37 1 1.1490 0.8592 -2.3518 38 1 3.0241 -2.1614 -2.9516 39 1 3.6451 -2.9880 -5.1795 40 1 4.0485 -3.4862 -6.8951 41 1 3.2670 -3.6480 -9.6040 42 1 4.7878 -2.7275 -9.5134 43 1 5.8497 -4.6040 -8.2882 44 1 4.3286 -5.5240 -8.3791 45 1 7.1790 -4.2798 -10.2456 46 1 6.5403 -4.7412 -11.8419 47 1 5.8261 -3.3702 -10.9599 48 1 5.1143 -7.3000 -9.7211 49 1 6.1369 -6.9688 -11.1396 50 1 6.7519 -6.6378 -9.5022 51 1 1.7027 0.3968 -6.9665 52 1 1.0779 1.2099 -4.7347 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602721934.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:19:30 Heat of formation + Delta-G solvation = -46.588892 kcal Electronic energy + Delta-G solvation = -27127.778025 eV Core-core repulsion = 23318.281713 eV Total energy + Delta-G solvation = -3809.496312 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.23097 -39.98658 -38.63369 -38.04437 -35.83797 -35.69034 -34.02534 -32.07723 -31.09152 -29.77672 -28.51876 -28.41998 -27.35348 -25.44045 -24.79560 -24.01528 -22.96362 -22.23954 -21.31399 -21.07657 -19.05266 -18.85904 -18.16301 -17.37351 -16.89339 -16.67378 -16.16138 -16.10147 -15.87597 -15.78238 -15.70769 -15.50477 -15.12243 -14.80658 -14.65741 -14.61945 -14.45221 -14.21926 -13.80925 -13.57684 -13.37177 -13.29248 -13.24792 -12.96000 -12.90352 -12.64886 -12.55890 -12.48614 -12.16689 -12.06198 -11.97134 -11.88930 -11.78224 -11.42075 -11.05015 -11.04274 -10.61698 -10.51643 -10.15044 -9.98676 -9.39593 -8.64109 -8.43981 -6.34042 0.08184 0.48595 1.53884 1.61203 1.79960 1.92526 2.06855 2.38854 2.58896 2.98776 3.11607 3.19502 3.74673 3.84326 3.90018 3.95011 4.00710 4.02585 4.05844 4.24750 4.26197 4.38671 4.39909 4.49002 4.51028 4.59291 4.63539 4.65269 4.68776 4.76206 4.80384 4.84602 4.91309 5.00469 5.02794 5.03337 5.04614 5.16345 5.24533 5.29377 5.34347 5.36224 5.40755 5.47380 5.58350 5.77423 5.97410 6.00282 6.03506 6.22956 6.26704 6.52459 6.62996 6.72246 7.22128 7.46079 8.76976 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.019508 B = 0.001606 C = 0.001503 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1434.990354 B =17433.865995 C =18630.407204 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.081 4.081 3 H 0.062 0.938 4 C 0.018 3.982 5 C -0.607 4.607 6 H 0.053 0.947 7 C -0.040 4.040 8 N -0.941 5.941 9 Si 1.113 2.887 10 H -0.287 1.287 11 H -0.270 1.270 12 H -0.270 1.270 13 C 0.137 3.863 14 N -0.726 5.726 15 C 0.242 3.758 16 C -0.222 4.222 17 C -0.022 4.022 18 C -0.224 4.224 19 C 0.567 3.433 20 O -0.589 6.589 21 N -0.717 5.717 22 C 0.127 3.873 23 C 0.050 3.950 24 N -0.561 5.561 25 C 0.017 3.983 26 C 0.025 3.975 27 C -0.016 4.016 28 C -0.212 4.212 29 H 0.045 0.955 30 H 0.066 0.934 31 H 0.042 0.958 32 H -0.011 1.011 33 H -0.008 1.008 34 H 0.256 0.744 35 H 0.056 0.944 36 H 0.061 0.939 37 H 0.407 0.593 38 H 0.131 0.869 39 H 0.152 0.848 40 H 0.413 0.587 41 H 0.061 0.939 42 H 0.058 0.942 43 H 0.051 0.949 44 H 0.093 0.907 45 H 0.031 0.969 46 H 0.078 0.922 47 H 0.065 0.935 48 H 0.075 0.925 49 H 0.077 0.923 50 H 0.031 0.969 51 H 0.129 0.871 52 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.398 -5.948 -26.188 27.213 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.100 4.100 3 H 0.081 0.919 4 C -0.020 4.020 5 C -0.645 4.645 6 H 0.071 0.929 7 C -0.237 4.237 8 N -0.579 5.579 9 Si 0.935 3.065 10 H -0.213 1.213 11 H -0.196 1.196 12 H -0.195 1.195 13 C 0.013 3.987 14 N -0.352 5.352 15 C 0.134 3.866 16 C -0.244 4.244 17 C -0.041 4.041 18 C -0.230 4.230 19 C 0.357 3.643 20 O -0.471 6.471 21 N -0.370 5.370 22 C 0.003 3.997 23 C -0.078 4.078 24 N -0.285 5.285 25 C -0.131 4.131 26 C -0.123 4.123 27 C -0.036 4.036 28 C -0.235 4.235 29 H 0.064 0.936 30 H 0.085 0.915 31 H 0.061 0.939 32 H 0.008 0.992 33 H 0.011 0.989 34 H 0.065 0.935 35 H 0.074 0.926 36 H 0.079 0.921 37 H 0.244 0.756 38 H 0.149 0.851 39 H 0.169 0.831 40 H 0.250 0.750 41 H 0.079 0.921 42 H 0.077 0.923 43 H 0.069 0.931 44 H 0.111 0.889 45 H 0.050 0.950 46 H 0.097 0.903 47 H 0.084 0.916 48 H 0.094 0.906 49 H 0.095 0.905 50 H 0.050 0.950 51 H 0.147 0.853 52 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 3.913 -5.663 -25.362 26.280 hybrid contribution 0.705 -0.026 -0.632 0.948 sum 4.619 -5.689 -25.994 27.007 Atomic orbital electron populations 1.21641 0.94427 1.01114 1.01118 1.21107 0.96735 0.99144 0.92989 0.91944 1.19130 0.94244 0.95012 0.93569 1.22426 1.38182 1.10512 0.93397 0.92867 1.27288 0.94126 0.97259 1.05071 1.70921 1.38081 1.15939 1.32964 0.82973 0.76896 0.74565 0.72068 1.21276 1.19576 1.19520 1.21365 0.98906 0.95068 0.83410 1.44805 1.60118 1.27890 1.02344 1.18290 0.90529 0.92302 0.85454 1.20792 1.06621 0.98329 0.98687 1.21171 0.94612 0.97992 0.90348 1.19548 1.10723 1.00552 0.92163 1.18359 0.76861 0.80282 0.88783 1.90730 1.57006 1.58636 1.40769 1.45678 1.56568 1.24716 1.10082 1.21217 0.99308 0.95406 0.83777 1.22215 0.99273 0.95788 0.90559 1.61851 1.42946 1.03775 1.19940 1.22512 0.93783 0.97078 0.99706 1.22434 0.98832 0.88503 1.02547 1.20998 0.92102 0.93390 0.97145 1.20678 1.08937 1.03285 0.90552 0.93575 0.91498 0.93885 0.99237 0.98927 0.93459 0.92588 0.92100 0.75616 0.85066 0.83080 0.74977 0.92106 0.92333 0.93117 0.88896 0.95025 0.90309 0.91598 0.90648 0.90457 0.95019 0.85277 0.84097 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.14 8.88 71.98 0.64 -3.50 16 2 C -0.08 -2.90 2.37 -10.79 -0.03 -2.92 16 3 H 0.06 2.27 8.14 -2.39 -0.02 2.25 16 4 C 0.02 0.86 3.76 29.85 0.11 0.97 16 5 C -0.61 -32.76 8.41 25.60 0.22 -32.55 16 6 H 0.05 2.78 7.06 -2.91 -0.02 2.76 16 7 C -0.04 -2.25 5.46 84.65 0.46 -1.79 16 8 N -0.94 -56.91 13.65 21.45 0.29 -56.61 16 9 Si 1.11 48.93 29.90 68.60 2.05 50.98 16 10 H -0.29 -12.77 7.11 99.48 0.71 -12.06 16 11 H -0.27 -11.04 7.11 99.48 0.71 -10.33 16 12 H -0.27 -11.00 7.11 99.48 0.71 -10.29 16 13 C 0.14 3.97 4.29 86.38 0.37 4.34 16 14 N -0.73 -17.50 5.43 -339.44 -1.84 -19.34 16 15 C 0.24 5.69 6.65 38.47 0.26 5.95 16 16 C -0.22 -4.88 9.28 22.36 0.21 -4.68 16 17 C -0.02 -0.41 9.53 22.50 0.21 -0.20 16 18 C -0.22 -5.07 5.88 -20.07 -0.12 -5.19 16 19 C 0.57 13.66 7.76 86.69 0.67 14.33 16 20 O -0.59 -18.75 16.34 -4.01 -0.07 -18.81 16 21 N -0.72 -11.89 5.51 -466.27 -2.57 -14.46 16 22 C 0.13 2.03 5.60 86.38 0.48 2.52 16 23 C 0.05 0.55 5.07 86.30 0.44 0.99 16 24 N -0.56 -6.77 5.02 -948.89 -4.76 -11.54 16 25 C 0.02 0.19 9.32 127.69 1.19 1.38 16 26 C 0.02 0.21 9.57 127.69 1.22 1.43 16 27 C -0.02 -0.39 9.58 22.50 0.22 -0.17 16 28 C -0.21 -4.64 9.87 22.36 0.22 -4.42 16 29 H 0.05 1.70 6.95 -2.39 -0.02 1.68 16 30 H 0.07 1.74 7.18 -2.39 -0.02 1.72 16 31 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 32 H -0.01 -0.55 8.01 -2.39 -0.02 -0.57 16 33 H -0.01 -0.39 8.00 -2.39 -0.02 -0.41 16 34 H 0.26 15.55 7.22 -92.71 -0.67 14.88 16 35 H 0.06 1.67 7.92 -2.39 -0.02 1.65 16 36 H 0.06 1.77 7.94 -2.39 -0.02 1.75 16 37 H 0.41 8.79 7.66 -92.71 -0.71 8.08 16 38 H 0.13 2.81 6.69 -2.91 -0.02 2.79 16 39 H 0.15 1.75 6.39 -2.91 -0.02 1.73 16 40 H 0.41 4.37 6.49 -92.71 -0.60 3.77 16 41 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 42 H 0.06 1.06 6.55 -2.39 -0.02 1.05 16 43 H 0.05 0.48 8.12 -2.39 -0.02 0.46 16 44 H 0.09 0.83 8.06 -2.39 -0.02 0.82 16 45 H 0.03 0.31 8.14 -2.39 -0.02 0.29 16 46 H 0.08 0.70 8.12 -2.39 -0.02 0.68 16 47 H 0.07 0.81 6.47 -2.39 -0.02 0.79 16 48 H 0.07 0.56 8.12 -2.39 -0.02 0.54 16 49 H 0.08 0.56 8.12 -2.39 -0.02 0.54 16 50 H 0.03 0.24 8.14 -2.39 -0.02 0.22 16 51 H 0.13 3.03 7.64 -2.92 -0.02 3.01 16 52 H 0.14 2.55 8.06 -2.91 -0.02 2.52 16 Total: -1.00 -69.94 415.94 -0.42 -70.36 By element: Atomic # 1 Polarization: 23.23 SS G_CDS: -0.30 Total: 22.93 kcal Atomic # 6 Polarization: -30.28 SS G_CDS: 6.78 Total: -23.51 kcal Atomic # 7 Polarization: -93.07 SS G_CDS: -8.88 Total: -101.95 kcal Atomic # 8 Polarization: -18.75 SS G_CDS: -0.07 Total: -18.81 kcal Atomic # 14 Polarization: 48.93 SS G_CDS: 2.05 Total: 50.98 kcal Total: -69.94 -0.42 -70.36 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602721934.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.769 kcal (2) G-P(sol) polarization free energy of solvation -69.939 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.170 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.419 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.358 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.589 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds