Wall clock time and date at job start Tue Mar 31 2020 17:37:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09003 * 109.47161 * 2 1 4 4 C 1.50702 * 109.46894 * 119.99820 * 2 1 3 5 5 H 1.07999 * 120.00272 * 114.30137 * 4 2 1 6 6 C 1.37880 * 120.00047 * 294.29869 * 4 2 1 7 7 N 1.31516 * 119.99821 * 157.45421 * 6 4 2 8 8 Si 1.86800 * 120.00249 * 337.73257 * 6 4 2 9 9 H 1.48496 * 109.46923 * 269.72580 * 8 6 4 10 10 H 1.48508 * 109.46832 * 29.72189 * 8 6 4 11 11 H 1.48493 * 109.47297 * 149.72128 * 8 6 4 12 12 N 1.46891 * 109.47499 * 239.99690 * 2 1 3 13 13 C 1.46897 * 111.00423 * 183.95364 * 12 2 1 14 14 C 1.46908 * 110.99774 * 60.00101 * 12 2 1 15 15 C 1.50705 * 109.47043 * 190.00121 * 14 12 2 16 16 O 1.21279 * 119.99790 * 359.97438 * 15 14 12 17 17 N 1.34774 * 119.99752 * 179.97438 * 15 14 12 18 18 C 1.46498 * 120.00232 * 0.02562 * 17 15 14 19 19 C 1.46505 * 119.99691 * 179.97438 * 17 15 14 20 20 C 1.50700 * 109.46745 * 90.00260 * 19 17 15 21 21 C 1.38285 * 119.92736 * 269.73020 * 20 19 17 22 22 C 1.38106 * 120.07207 * 179.72650 * 21 20 19 23 23 C 1.38907 * 119.92643 * 0.54422 * 22 21 20 24 24 N 1.39681 * 120.07500 * 179.70463 * 23 22 21 25 25 C 1.46503 * 119.99918 * 180.02562 * 24 23 22 26 26 C 1.46497 * 119.99656 * 0.02562 * 24 23 22 27 27 C 1.38913 * 119.85034 * 359.72443 * 23 22 21 28 28 C 1.38103 * 119.92605 * 0.02562 * 27 23 22 29 29 H 1.08992 * 109.46953 * 51.60947 * 1 2 3 30 30 H 1.09002 * 109.46507 * 171.60625 * 1 2 3 31 31 H 1.08996 * 109.47152 * 291.60621 * 1 2 3 32 32 H 0.96997 * 120.00425 * 355.23214 * 7 6 4 33 33 H 1.09000 * 109.47191 * 60.00159 * 13 12 2 34 34 H 1.08998 * 109.47566 * 180.02562 * 13 12 2 35 35 H 1.09005 * 109.46960 * 300.00328 * 13 12 2 36 36 H 1.08996 * 109.47040 * 309.99678 * 14 12 2 37 37 H 1.08996 * 109.47206 * 69.99851 * 14 12 2 38 38 H 1.09001 * 109.47152 * 89.99608 * 18 17 15 39 39 H 1.09002 * 109.47177 * 209.99900 * 18 17 15 40 40 H 1.08997 * 109.46733 * 329.99888 * 18 17 15 41 41 H 1.08999 * 109.46980 * 210.00252 * 19 17 15 42 42 H 1.09001 * 109.47355 * 330.00793 * 19 17 15 43 43 H 1.07993 * 119.96147 * 359.97285 * 21 20 19 44 44 H 1.08003 * 120.03590 * 180.26870 * 22 21 20 45 45 H 1.08996 * 109.46858 * 89.99938 * 25 24 23 46 46 H 1.08997 * 109.46666 * 210.00114 * 25 24 23 47 47 H 1.08998 * 109.46811 * 330.00117 * 25 24 23 48 48 H 1.09004 * 109.47267 * 60.00171 * 26 24 23 49 49 H 1.09002 * 109.46949 * 179.97438 * 26 24 23 50 50 H 1.09000 * 109.47632 * 299.99622 * 26 24 23 51 51 H 1.08001 * 120.03401 * 180.02562 * 27 23 22 52 52 H 1.07997 * 119.96295 * 179.97438 * 28 27 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.5752 -1.6390 1.1342 6 6 1.7988 -0.1747 2.4794 7 7 1.8199 -0.9498 3.5417 8 14 1.4449 1.6503 2.6617 9 1 2.7199 2.3839 2.8651 10 1 0.7768 2.1501 1.4331 11 1 0.5565 1.8679 3.8315 12 7 2.0198 -0.6925 -1.1993 13 6 3.4851 -0.7945 -1.1869 14 6 1.5488 -0.0264 -2.4210 15 6 1.8581 -0.8912 -3.6159 16 8 2.4164 -1.9572 -3.4646 17 7 1.5143 -0.4799 -4.8524 18 6 0.8405 0.8080 -5.0352 19 6 1.8156 -1.3204 -6.0140 20 6 0.6584 -2.2498 -6.2751 21 6 0.6265 -3.4966 -5.6779 22 6 -0.4353 -4.3485 -5.9106 23 6 -1.4664 -3.9562 -6.7546 24 7 -2.5388 -4.8177 -6.9970 25 6 -3.6252 -4.4024 -7.8878 26 6 -2.5771 -6.1366 -6.3604 27 6 -1.4285 -2.7051 -7.3573 28 6 -0.3663 -1.8561 -7.1162 29 1 -0.3633 0.6382 -0.8054 30 1 -0.3632 -1.0167 -0.1500 31 1 -0.3633 0.3784 0.9554 32 1 1.9308 -1.9081 3.4408 33 1 3.8030 -1.3531 -0.3066 34 1 3.8211 -1.3109 -2.0861 35 1 3.9187 0.2052 -1.1590 36 1 0.4723 0.1323 -2.3564 37 1 2.0519 0.9346 -2.5280 38 1 1.5854 1.5905 -5.1800 39 1 0.1916 0.7577 -5.9096 40 1 0.2431 1.0339 -4.1519 41 1 1.9784 -0.6886 -6.8871 42 1 2.7138 -1.9054 -5.8161 43 1 1.4309 -3.8029 -5.0257 44 1 -0.4617 -5.3205 -5.4405 45 1 -3.3911 -4.7007 -8.9097 46 1 -4.5542 -4.8783 -7.5741 47 1 -3.7383 -3.3193 -7.8423 48 1 -2.5749 -6.0173 -5.2769 49 1 -3.4823 -6.6613 -6.6659 50 1 -1.7029 -6.7124 -6.6644 51 1 -2.2289 -2.3969 -8.0136 52 1 -0.3361 -0.8836 -7.5847 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000759469481.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:37:05 Heat of formation + Delta-G solvation = 24.261695 kcal Electronic energy + Delta-G solvation = -29232.342885 eV Core-core repulsion = 25425.918884 eV Total energy + Delta-G solvation = -3806.424000 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 1.53 seconds Orbital eigenvalues (eV) -40.11973 -39.33751 -37.05449 -36.31002 -35.09085 -32.68220 -31.28556 -31.19869 -29.89816 -28.41092 -28.27211 -27.25472 -25.87128 -24.38392 -23.95810 -23.01304 -22.38411 -20.61101 -19.48191 -18.72331 -17.54688 -17.45227 -16.72110 -16.02004 -15.94889 -15.80677 -15.31785 -15.07687 -14.65079 -14.07971 -13.95960 -13.95358 -13.61056 -13.57029 -13.47914 -12.99461 -12.95230 -12.62286 -12.56307 -12.50108 -12.38025 -12.20827 -12.13510 -11.86108 -11.75520 -11.59925 -11.37116 -11.09745 -10.84680 -10.79326 -10.45572 -10.33443 -10.19379 -9.93888 -9.75646 -9.21060 -8.92063 -8.82194 -8.54837 -8.17601 -7.40517 -7.23351 -6.41809 -3.97098 1.43261 1.48101 2.90183 3.00322 3.16384 3.42515 3.44107 3.60072 3.92264 4.53749 4.63855 4.68260 4.76405 4.90347 4.93227 4.94516 5.03038 5.06402 5.08303 5.27027 5.28373 5.29576 5.33922 5.37622 5.40252 5.44440 5.58355 5.60745 5.69377 5.73669 5.79354 5.79684 6.05495 6.21109 6.24991 6.35717 6.36126 6.48113 6.59395 6.62511 6.72327 6.75145 6.81308 6.92738 7.04421 7.04980 7.33147 7.36467 7.50634 7.81728 8.09785 8.37490 8.49842 8.58777 9.06716 9.67734 10.97226 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.014776 B = 0.002662 C = 0.002488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1894.499191 B =10517.271315 C =11251.484741 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.190 3.810 3 H -0.008 1.008 4 C -0.593 4.593 5 H 0.066 0.934 6 C 0.035 3.965 7 N -0.902 5.902 8 Si 1.038 2.962 9 H -0.287 1.287 10 H -0.277 1.277 11 H -0.286 1.286 12 N -0.512 5.512 13 C 0.038 3.962 14 C 0.032 3.968 15 C 0.518 3.482 16 O -0.515 6.515 17 N -0.622 5.622 18 C 0.080 3.920 19 C 0.164 3.836 20 C -0.161 4.161 21 C -0.043 4.043 22 C -0.195 4.195 23 C 0.213 3.787 24 N -0.641 5.641 25 C 0.095 3.905 26 C 0.096 3.904 27 C -0.203 4.203 28 C -0.061 4.061 29 H 0.018 0.982 30 H 0.052 0.948 31 H 0.050 0.950 32 H 0.270 0.730 33 H 0.077 0.923 34 H 0.063 0.937 35 H 0.004 0.996 36 H 0.099 0.901 37 H 0.049 0.951 38 H 0.054 0.946 39 H 0.067 0.933 40 H 0.072 0.928 41 H 0.077 0.923 42 H 0.087 0.913 43 H 0.129 0.871 44 H 0.119 0.881 45 H 0.045 0.955 46 H 0.064 0.936 47 H 0.067 0.933 48 H 0.055 0.945 49 H 0.071 0.929 50 H 0.053 0.947 51 H 0.119 0.881 52 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.551 -1.416 -26.726 28.096 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.083 3.917 3 H 0.009 0.991 4 C -0.631 4.631 5 H 0.084 0.916 6 C -0.171 4.171 7 N -0.535 5.535 8 Si 0.866 3.134 9 H -0.214 1.214 10 H -0.203 1.203 11 H -0.212 1.212 12 N -0.236 5.236 13 C -0.111 4.111 14 C -0.099 4.099 15 C 0.306 3.694 16 O -0.389 6.389 17 N -0.358 5.358 18 C -0.063 4.063 19 C 0.042 3.958 20 C -0.164 4.164 21 C -0.063 4.063 22 C -0.217 4.217 23 C 0.112 3.888 24 N -0.354 5.354 25 C -0.048 4.048 26 C -0.047 4.047 27 C -0.225 4.225 28 C -0.081 4.081 29 H 0.037 0.963 30 H 0.071 0.929 31 H 0.069 0.931 32 H 0.080 0.920 33 H 0.095 0.905 34 H 0.082 0.918 35 H 0.023 0.977 36 H 0.116 0.884 37 H 0.066 0.934 38 H 0.072 0.928 39 H 0.086 0.914 40 H 0.090 0.910 41 H 0.096 0.904 42 H 0.105 0.895 43 H 0.147 0.853 44 H 0.137 0.863 45 H 0.064 0.936 46 H 0.083 0.917 47 H 0.086 0.914 48 H 0.073 0.927 49 H 0.089 0.911 50 H 0.072 0.928 51 H 0.137 0.863 52 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -8.857 -1.410 -25.506 27.037 hybrid contribution 0.310 -0.310 -1.148 1.229 sum -8.547 -1.721 -26.654 28.044 Atomic orbital electron populations 1.22139 0.98405 1.00118 0.98780 1.19682 0.91671 0.92035 0.88340 0.99075 1.21918 1.40331 1.10653 0.90180 0.91577 1.25631 0.93820 1.05552 0.92106 1.70792 1.44381 1.06567 1.31762 0.84107 0.77141 0.76360 0.75754 1.21369 1.20299 1.21201 1.61770 1.10726 1.51246 0.99896 1.22312 0.87282 0.98651 1.02807 1.22077 1.02306 0.94792 0.90740 1.20916 0.77834 0.87076 0.83571 1.90618 1.40664 1.22827 1.84781 1.48020 1.60943 1.20340 1.06454 1.21750 0.97067 0.84687 1.02804 1.20160 0.95828 0.92066 0.87754 1.19977 0.98658 0.96152 1.01644 1.21001 0.97037 0.92568 0.95656 1.20675 0.95669 1.01631 1.03729 1.17839 0.87417 0.89740 0.93796 1.46312 1.21767 1.15984 1.51314 1.21627 0.89175 1.00924 0.93103 1.21593 1.01894 0.83478 0.97740 1.20576 1.01199 0.94215 1.06543 1.20715 0.92719 0.98163 0.96455 0.96313 0.92857 0.93103 0.91975 0.90480 0.91848 0.97709 0.88354 0.93370 0.92777 0.91385 0.90973 0.90450 0.89459 0.85346 0.86280 0.93624 0.91701 0.91390 0.92663 0.91055 0.92813 0.86341 0.86536 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.08 8.17 37.16 0.30 -2.77 16 2 C 0.19 4.66 1.61 -68.87 -0.11 4.55 16 3 H -0.01 -0.20 6.50 -51.93 -0.34 -0.54 16 4 C -0.59 -16.95 8.01 -34.44 -0.28 -17.22 16 5 H 0.07 2.07 6.88 -52.49 -0.36 1.71 16 6 C 0.03 1.01 5.19 -17.82 -0.09 0.91 16 7 N -0.90 -27.89 13.70 55.43 0.76 -27.13 16 8 Si 1.04 25.21 26.39 -169.99 -4.49 20.73 16 9 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 10 H -0.28 -6.20 6.02 56.52 0.34 -5.86 16 11 H -0.29 -6.93 7.11 56.52 0.40 -6.52 16 12 N -0.51 -11.58 4.36 -237.73 -1.04 -12.62 16 13 C 0.04 0.83 8.88 60.06 0.53 1.36 16 14 C 0.03 0.58 3.82 -4.97 -0.02 0.56 16 15 C 0.52 8.87 7.37 -10.98 -0.08 8.79 16 16 O -0.51 -10.46 13.45 5.56 0.07 -10.39 16 17 N -0.62 -8.07 2.86 -182.95 -0.52 -8.59 16 18 C 0.08 0.76 10.24 59.85 0.61 1.37 16 19 C 0.16 1.90 5.53 -5.19 -0.03 1.87 16 20 C -0.16 -1.97 5.46 -104.59 -0.57 -2.54 16 21 C -0.04 -0.60 9.69 -39.61 -0.38 -0.98 16 22 C -0.19 -2.48 9.31 -39.38 -0.37 -2.85 16 23 C 0.21 2.47 6.55 -83.78 -0.55 1.92 16 24 N -0.64 -6.09 3.41 -187.55 -0.64 -6.73 16 25 C 0.09 0.64 10.16 59.85 0.61 1.24 16 26 C 0.10 0.74 9.40 59.85 0.56 1.30 16 27 C -0.20 -2.15 9.21 -39.38 -0.36 -2.52 16 28 C -0.06 -0.64 9.69 -39.61 -0.38 -1.03 16 29 H 0.02 0.35 6.66 -51.93 -0.35 0.00 16 30 H 0.05 1.23 8.14 -51.93 -0.42 0.81 16 31 H 0.05 1.17 5.84 -51.93 -0.30 0.87 16 32 H 0.27 8.39 8.73 -40.82 -0.36 8.03 16 33 H 0.08 1.86 6.34 -51.93 -0.33 1.53 16 34 H 0.06 1.34 5.82 -51.93 -0.30 1.04 16 35 H 0.00 0.09 8.14 -51.93 -0.42 -0.33 16 36 H 0.10 1.67 5.27 -51.93 -0.27 1.40 16 37 H 0.05 0.80 8.09 -51.93 -0.42 0.38 16 38 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 39 H 0.07 0.51 8.07 -51.93 -0.42 0.09 16 40 H 0.07 0.69 6.44 -51.93 -0.33 0.36 16 41 H 0.08 0.68 8.01 -51.93 -0.42 0.26 16 42 H 0.09 1.13 7.36 -51.93 -0.38 0.75 16 43 H 0.13 1.95 7.59 -52.49 -0.40 1.55 16 44 H 0.12 1.40 6.73 -52.48 -0.35 1.05 16 45 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 46 H 0.06 0.34 7.92 -51.93 -0.41 -0.07 16 47 H 0.07 0.44 6.20 -51.93 -0.32 0.12 16 48 H 0.05 0.46 7.95 -51.93 -0.41 0.04 16 49 H 0.07 0.39 7.79 -51.93 -0.40 -0.01 16 50 H 0.05 0.40 7.95 -51.93 -0.41 -0.01 16 51 H 0.12 1.01 6.14 -52.49 -0.32 0.69 16 52 H 0.12 0.94 8.06 -52.49 -0.42 0.51 16 LS Contribution 401.61 15.07 6.05 6.05 Total: -1.00 -34.37 401.61 -8.99 -43.37 By element: Atomic # 1 Polarization: 9.92 SS G_CDS: -8.59 Total: 1.33 kcal Atomic # 6 Polarization: -5.41 SS G_CDS: -0.60 Total: -6.02 kcal Atomic # 7 Polarization: -53.63 SS G_CDS: -1.44 Total: -55.07 kcal Atomic # 8 Polarization: -10.46 SS G_CDS: 0.07 Total: -10.39 kcal Atomic # 14 Polarization: 25.21 SS G_CDS: -4.49 Total: 20.73 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -34.37 -8.99 -43.37 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000759469481.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.629 kcal (2) G-P(sol) polarization free energy of solvation -34.374 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.255 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.993 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.368 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.262 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.53 seconds