Wall clock time and date at job start Tue Mar 31 2020 18:36:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.46505 * 120.00044 * 2 1 4 4 C 1.50699 * 109.46810 * 269.99754 * 3 2 1 5 5 H 1.08007 * 120.00006 * 359.97438 * 4 3 2 6 6 C 1.37874 * 120.00182 * 180.02562 * 4 3 2 7 7 N 1.31514 * 120.00153 * 359.97438 * 6 4 3 8 8 Si 1.86802 * 120.00330 * 180.02562 * 6 4 3 9 9 H 1.48504 * 109.46999 * 89.99799 * 8 6 4 10 10 H 1.48495 * 109.47219 * 209.99694 * 8 6 4 11 11 H 1.48498 * 109.46965 * 329.99697 * 8 6 4 12 12 C 1.39674 * 120.00379 * 179.97438 * 2 1 3 13 13 C 1.38913 * 120.07117 * 359.97438 * 12 2 1 14 14 C 1.38106 * 119.92560 * 180.02562 * 13 12 2 15 15 C 1.38281 * 120.07247 * 0.02562 * 14 13 12 16 16 C 1.50699 * 119.92333 * 179.97438 * 15 14 13 17 17 N 1.46906 * 109.47140 * 89.99957 * 16 15 14 18 18 C 1.46898 * 110.99888 * 179.97438 * 17 16 15 19 19 C 1.53006 * 109.47138 * 180.02562 * 18 17 16 20 20 O 1.42901 * 110.28400 * 62.87075 * 19 18 17 21 21 C 1.54252 * 110.32648 * 184.99986 * 19 18 17 22 22 C 1.54381 * 105.06187 * 118.89460 * 21 19 18 23 23 N 1.48558 * 104.59212 * 23.85363 * 22 21 19 24 24 C 1.46900 * 111.00044 * 200.95975 * 23 22 21 25 25 C 1.48560 * 104.22244 * 320.51574 * 23 22 21 26 26 C 1.38286 * 120.15428 * 0.27198 * 15 14 13 27 27 C 1.38109 * 120.06783 * 359.44786 * 26 15 14 28 28 H 1.09000 * 109.46808 * 270.00383 * 1 2 3 29 29 H 1.08995 * 109.47104 * 29.99957 * 1 2 3 30 30 H 1.08995 * 109.47253 * 150.00556 * 1 2 3 31 31 H 1.08989 * 109.47142 * 29.99725 * 3 2 1 32 32 H 1.09005 * 109.47282 * 150.00009 * 3 2 1 33 33 H 0.96994 * 120.00663 * 180.02562 * 7 6 4 34 34 H 1.08006 * 120.03901 * 0.05404 * 13 12 2 35 35 H 1.08007 * 119.96298 * 179.97438 * 14 13 12 36 36 H 1.09004 * 109.47103 * 330.00058 * 16 15 14 37 37 H 1.09000 * 109.47247 * 209.99935 * 16 15 14 38 38 H 1.00904 * 110.99860 * 56.04901 * 17 16 15 39 39 H 1.08997 * 109.47334 * 299.99788 * 18 17 16 40 40 H 1.08995 * 109.47296 * 60.00089 * 18 17 16 41 41 H 0.96699 * 114.00585 * 300.70003 * 20 19 18 42 42 H 1.09002 * 110.32938 * 237.79292 * 21 19 18 43 43 H 1.09003 * 110.32260 * 359.97438 * 21 19 18 44 44 H 1.08998 * 110.41092 * 142.63198 * 22 21 19 45 45 H 1.09004 * 110.41198 * 265.07581 * 22 21 19 46 46 H 1.08996 * 109.47148 * 59.86956 * 24 23 22 47 47 H 1.08999 * 109.47250 * 179.87746 * 24 23 22 48 48 H 1.09005 * 109.46586 * 299.87468 * 24 23 22 49 49 H 1.08998 * 110.41517 * 280.70616 * 25 23 22 50 50 H 1.08998 * 110.41389 * 158.25814 * 25 23 22 51 51 H 1.07997 * 119.96197 * 179.70657 * 26 15 14 52 52 H 1.08001 * 120.03420 * 180.27096 * 27 26 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4487 1.7037 -1.4208 5 1 2.0981 1.0956 -2.2417 6 6 3.1269 2.8773 -1.6729 7 7 3.5542 3.6176 -0.6734 8 14 3.4377 3.4168 -3.4341 9 1 2.3078 4.2604 -3.9000 10 1 4.6983 4.1991 -3.4970 11 1 3.5539 2.2199 -4.3052 12 6 2.1634 -1.2096 0.0005 13 6 1.4704 -2.4135 0.0016 14 6 2.1641 -3.6077 0.0027 15 6 3.5469 -3.6059 0.0032 16 6 4.3004 -4.9110 0.0050 17 7 4.5457 -5.3366 -1.3795 18 6 5.2805 -6.6080 -1.4170 19 6 5.5173 -7.0176 -2.8720 20 8 6.3360 -6.0500 -3.5321 21 6 6.1767 -8.4106 -2.9361 22 6 5.1732 -9.2944 -3.7075 23 7 4.3751 -8.3368 -4.5155 24 6 3.0900 -8.9268 -4.9134 25 6 4.1708 -7.1769 -3.6101 26 6 4.2399 -2.4092 0.0084 27 6 3.5524 -1.2114 0.0015 28 1 -0.3633 0.0001 1.0277 29 1 -0.3633 0.8899 -0.5138 30 1 -0.3633 -0.8900 -0.5137 31 1 1.6084 2.0284 0.5137 32 1 3.1499 1.1384 0.5138 33 1 4.0310 4.4434 -0.8506 34 1 0.3903 -2.4156 0.0012 35 1 1.6259 -4.5441 0.0039 36 1 3.7111 -5.6701 0.5194 37 1 5.2526 -4.7801 0.5190 38 1 5.0349 -4.6213 -1.8964 39 1 6.2395 -6.4885 -0.9129 40 1 4.6985 -7.3791 -0.9123 41 1 5.9609 -5.1588 -3.5425 42 1 7.1241 -8.3568 -3.4726 43 1 6.3322 -8.8024 -1.9309 44 1 5.7020 -9.9918 -4.3572 45 1 4.5296 -9.8342 -3.0127 46 1 2.5215 -9.1940 -4.0227 47 1 2.5250 -8.2039 -5.5019 48 1 3.2701 -9.8204 -5.5111 49 1 3.3704 -7.3852 -2.9001 50 1 3.9449 -6.2798 -4.1865 51 1 5.3199 -2.4114 0.0136 52 1 4.0943 -0.2772 0.0011 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000762568640.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:36:53 Heat of formation + Delta-G solvation = -6.575091 kcal Electronic energy + Delta-G solvation = -28528.847271 eV Core-core repulsion = 24721.086087 eV Total energy + Delta-G solvation = -3807.761184 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.00268 -39.04242 -36.85857 -35.99935 -34.65251 -32.73453 -31.92739 -30.48031 -30.26554 -28.59839 -27.82369 -26.82498 -25.60401 -24.28575 -23.25599 -22.19979 -21.62095 -21.43776 -20.40837 -19.60977 -17.29697 -16.72110 -16.54313 -16.23842 -16.05554 -15.57017 -15.03918 -14.81609 -14.61189 -14.50374 -14.21043 -13.85891 -13.76507 -13.55215 -13.43214 -13.09740 -12.91559 -12.82623 -12.54914 -12.22325 -12.19201 -11.95620 -11.83744 -11.75334 -11.66761 -11.57981 -11.43111 -11.27014 -11.08061 -10.92106 -10.71573 -10.63072 -10.29186 -10.11232 -9.91813 -9.77804 -8.90035 -8.75947 -8.53526 -8.52582 -8.30306 -6.50036 -6.04349 -4.19800 2.07306 2.17200 3.25014 3.32154 3.36704 3.72089 3.91917 3.97825 4.12751 4.34594 4.39287 4.45756 4.60173 4.72397 4.84657 5.00662 5.11459 5.15069 5.18642 5.19489 5.29356 5.37371 5.37576 5.43360 5.53523 5.58126 5.59012 5.59139 5.61248 5.69847 5.78240 5.80120 5.90608 5.98076 6.05003 6.25281 6.35444 6.39768 6.49184 6.60717 6.70462 6.79891 6.93808 7.00559 7.14880 7.17871 7.25668 7.33719 7.49467 7.56478 7.78751 8.12839 8.23505 8.45362 8.89254 9.47263 10.93420 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.012815 B = 0.002397 C = 0.002246 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2184.470729 B =11677.455412 C =12463.325598 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.098 3.902 2 N -0.615 5.615 3 C 0.249 3.751 4 C -0.531 4.531 5 H 0.059 0.941 6 C 0.061 3.939 7 N -0.895 5.895 8 Si 0.896 3.104 9 H -0.280 1.280 10 H -0.285 1.285 11 H -0.273 1.273 12 C 0.243 3.757 13 C -0.223 4.223 14 C -0.050 4.050 15 C -0.176 4.176 16 C 0.118 3.882 17 N -0.684 5.684 18 C 0.035 3.965 19 C 0.133 3.867 20 O -0.551 6.551 21 C -0.113 4.113 22 C 0.032 3.968 23 N -0.515 5.515 24 C 0.013 3.987 25 C 0.023 3.977 26 C -0.066 4.066 27 C -0.187 4.187 28 H 0.036 0.964 29 H 0.067 0.933 30 H 0.055 0.945 31 H 0.030 0.970 32 H 0.036 0.964 33 H 0.264 0.736 34 H 0.113 0.887 35 H 0.108 0.892 36 H 0.070 0.930 37 H 0.031 0.969 38 H 0.340 0.660 39 H 0.039 0.961 40 H 0.078 0.922 41 H 0.378 0.622 42 H 0.086 0.914 43 H 0.078 0.922 44 H 0.082 0.918 45 H 0.044 0.956 46 H 0.028 0.972 47 H 0.070 0.930 48 H 0.067 0.933 49 H 0.058 0.942 50 H 0.088 0.912 51 H 0.108 0.892 52 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.858 -23.574 -0.738 23.601 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 N -0.320 5.320 3 C 0.129 3.871 4 C -0.570 4.570 5 H 0.078 0.922 6 C -0.141 4.141 7 N -0.534 5.534 8 Si 0.724 3.276 9 H -0.206 1.206 10 H -0.211 1.211 11 H -0.197 1.197 12 C 0.135 3.865 13 C -0.246 4.246 14 C -0.070 4.070 15 C -0.179 4.179 16 C -0.010 4.010 17 N -0.316 5.316 18 C -0.095 4.095 19 C 0.091 3.909 20 O -0.358 6.358 21 C -0.152 4.152 22 C -0.096 4.096 23 N -0.239 5.239 24 C -0.136 4.136 25 C -0.106 4.106 26 C -0.086 4.086 27 C -0.210 4.210 28 H 0.054 0.946 29 H 0.086 0.914 30 H 0.073 0.927 31 H 0.048 0.952 32 H 0.054 0.946 33 H 0.074 0.926 34 H 0.131 0.869 35 H 0.126 0.874 36 H 0.089 0.911 37 H 0.049 0.951 38 H 0.159 0.841 39 H 0.058 0.942 40 H 0.097 0.903 41 H 0.226 0.774 42 H 0.105 0.895 43 H 0.097 0.903 44 H 0.101 0.899 45 H 0.063 0.937 46 H 0.047 0.953 47 H 0.089 0.911 48 H 0.086 0.914 49 H 0.076 0.924 50 H 0.106 0.894 51 H 0.126 0.874 52 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 0.862 -23.843 -1.344 23.896 hybrid contribution 0.118 1.055 0.070 1.064 sum 0.981 -22.788 -1.274 22.844 Atomic orbital electron populations 1.21477 0.81474 1.01965 0.99701 1.47119 1.04416 1.04646 1.75850 1.19292 0.92064 0.78739 0.97021 1.21570 1.36396 1.06431 0.92613 0.92248 1.24964 0.95389 0.96292 0.97431 1.69925 1.38351 1.14344 1.30792 0.86521 0.77709 0.78740 0.84675 1.20626 1.21077 1.19729 1.17967 0.91507 0.86011 0.90970 1.20574 0.99039 0.91418 1.13576 1.20471 0.93187 0.96459 0.96860 1.19130 0.93629 0.93202 1.11928 1.20631 0.97637 0.94582 0.88166 1.60618 1.51278 1.04877 1.14822 1.22689 0.97041 0.93738 0.96056 1.21913 0.89694 0.89348 0.89933 1.86566 1.48384 1.21359 1.79462 1.22318 0.99884 0.92152 1.00798 1.23132 0.95680 0.95215 0.95558 1.65385 1.16018 1.06287 1.36198 1.22517 0.90728 1.00222 1.00096 1.23682 0.96841 0.95290 0.94738 1.20659 0.98439 0.91714 0.97788 1.20851 0.92696 0.98700 1.08718 0.94600 0.91427 0.92652 0.95204 0.94638 0.92627 0.86915 0.87413 0.91134 0.95105 0.84142 0.94247 0.90314 0.77389 0.89495 0.90347 0.89920 0.93728 0.95341 0.91090 0.91396 0.92352 0.89385 0.87440 0.85086 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.70 10.19 59.84 0.61 2.31 16 2 N -0.61 -12.99 2.99 -181.01 -0.54 -13.54 16 3 C 0.25 6.16 4.91 -5.19 -0.03 6.14 16 4 C -0.53 -14.35 9.39 -34.44 -0.32 -14.68 16 5 H 0.06 1.64 7.81 -52.48 -0.41 1.23 16 6 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 7 N -0.90 -25.47 13.29 55.43 0.74 -24.73 16 8 Si 0.90 21.17 29.54 -169.99 -5.02 16.15 16 9 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 10 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 11 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 12 C 0.24 4.82 6.55 -83.79 -0.55 4.27 16 13 C -0.22 -3.79 9.21 -39.38 -0.36 -4.16 16 14 C -0.05 -0.76 9.69 -39.61 -0.38 -1.15 16 15 C -0.18 -2.56 5.39 -104.59 -0.56 -3.13 16 16 C 0.12 1.35 5.81 -4.97 -0.03 1.33 16 17 N -0.68 -7.16 6.10 -115.05 -0.70 -7.86 16 18 C 0.03 0.32 4.56 -3.82 -0.02 0.30 16 19 C 0.13 1.27 1.21 -89.24 -0.11 1.16 16 20 O -0.55 -6.06 12.94 -35.23 -0.46 -6.52 16 21 C -0.11 -0.96 6.45 -25.35 -0.16 -1.12 16 22 C 0.03 0.26 6.49 -2.18 -0.01 0.25 16 23 N -0.52 -5.11 5.66 -238.23 -1.35 -6.46 16 24 C 0.01 0.11 9.53 60.06 0.57 0.68 16 25 C 0.02 0.23 5.41 -2.18 -0.01 0.21 16 26 C -0.07 -1.08 9.69 -39.61 -0.38 -1.47 16 27 C -0.19 -3.68 9.21 -39.38 -0.36 -4.04 16 28 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.07 1.20 8.07 -51.93 -0.42 0.78 16 30 H 0.05 0.85 6.20 -51.93 -0.32 0.53 16 31 H 0.03 0.78 8.07 -51.94 -0.42 0.36 16 32 H 0.04 0.93 6.20 -51.93 -0.32 0.61 16 33 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 34 H 0.11 1.74 6.14 -52.48 -0.32 1.42 16 35 H 0.11 1.40 8.06 -52.48 -0.42 0.98 16 36 H 0.07 0.76 8.08 -51.93 -0.42 0.34 16 37 H 0.03 0.34 8.08 -51.93 -0.42 -0.08 16 38 H 0.34 3.61 7.27 -39.29 -0.29 3.32 16 39 H 0.04 0.37 8.14 -51.93 -0.42 -0.06 16 40 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.38 3.40 7.63 45.56 0.35 3.74 16 42 H 0.09 0.81 7.98 -51.93 -0.41 0.39 16 43 H 0.08 0.53 7.71 -51.93 -0.40 0.13 16 44 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 45 H 0.04 0.32 7.97 -51.93 -0.41 -0.09 16 46 H 0.03 0.22 7.97 -51.93 -0.41 -0.20 16 47 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 48 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 49 H 0.06 0.60 7.62 -51.93 -0.40 0.20 16 50 H 0.09 0.98 8.08 -51.93 -0.42 0.56 16 51 H 0.11 1.55 8.06 -52.49 -0.42 1.12 16 52 H 0.13 2.86 6.14 -52.49 -0.32 2.54 16 LS Contribution 411.32 15.07 6.20 6.20 Total: -1.00 -29.64 411.32 -11.64 -41.28 By element: Atomic # 1 Polarization: 15.28 SS G_CDS: -8.29 Total: 6.99 kcal Atomic # 6 Polarization: -9.29 SS G_CDS: -2.21 Total: -11.51 kcal Atomic # 7 Polarization: -50.74 SS G_CDS: -1.85 Total: -52.59 kcal Atomic # 8 Polarization: -6.06 SS G_CDS: -0.46 Total: -6.52 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Total LS contribution 6.20 Total: 6.20 kcal Total: -29.64 -11.64 -41.28 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000762568640.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.701 kcal (2) G-P(sol) polarization free energy of solvation -29.639 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.062 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.637 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.276 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.575 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds