Wall clock time and date at job start Tue Mar 31 2020 18:36:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.46505 * 120.00044 * 2 1 4 4 C 1.50699 * 109.46810 * 269.99754 * 3 2 1 5 5 H 1.08007 * 120.00006 * 359.97438 * 4 3 2 6 6 C 1.37874 * 120.00182 * 180.02562 * 4 3 2 7 7 N 1.31514 * 120.00153 * 359.97438 * 6 4 3 8 8 Si 1.86802 * 120.00330 * 180.02562 * 6 4 3 9 9 H 1.48504 * 109.46999 * 89.99799 * 8 6 4 10 10 H 1.48495 * 109.47219 * 209.99694 * 8 6 4 11 11 H 1.48498 * 109.46965 * 329.99697 * 8 6 4 12 12 C 1.39674 * 120.00379 * 179.97438 * 2 1 3 13 13 C 1.38913 * 120.07117 * 359.97438 * 12 2 1 14 14 C 1.38106 * 119.92560 * 180.02562 * 13 12 2 15 15 C 1.38281 * 120.07247 * 0.02562 * 14 13 12 16 16 C 1.50699 * 119.92333 * 179.97438 * 15 14 13 17 17 N 1.46906 * 109.47140 * 89.99957 * 16 15 14 18 18 C 1.46898 * 110.99888 * 179.97438 * 17 16 15 19 19 C 1.53006 * 109.47138 * 180.02562 * 18 17 16 20 20 O 1.42901 * 110.28400 * 62.87075 * 19 18 17 21 21 C 1.54252 * 110.32648 * 184.99986 * 19 18 17 22 22 C 1.54381 * 105.06187 * 118.89460 * 21 19 18 23 23 N 1.48558 * 104.59212 * 23.85363 * 22 21 19 24 24 C 1.46900 * 111.00044 * 200.95975 * 23 22 21 25 25 C 1.48560 * 104.22244 * 320.51574 * 23 22 21 26 26 C 1.38286 * 120.15428 * 0.27198 * 15 14 13 27 27 C 1.38109 * 120.06783 * 359.44786 * 26 15 14 28 28 H 1.09000 * 109.46808 * 270.00383 * 1 2 3 29 29 H 1.08995 * 109.47104 * 29.99957 * 1 2 3 30 30 H 1.08995 * 109.47253 * 150.00556 * 1 2 3 31 31 H 1.08989 * 109.47142 * 29.99725 * 3 2 1 32 32 H 1.09005 * 109.47282 * 150.00009 * 3 2 1 33 33 H 0.96994 * 120.00663 * 180.02562 * 7 6 4 34 34 H 1.08006 * 120.03901 * 0.05404 * 13 12 2 35 35 H 1.08007 * 119.96298 * 179.97438 * 14 13 12 36 36 H 1.09004 * 109.47103 * 330.00058 * 16 15 14 37 37 H 1.09000 * 109.47247 * 209.99935 * 16 15 14 38 38 H 1.00904 * 110.99860 * 56.04901 * 17 16 15 39 39 H 1.08997 * 109.47334 * 299.99788 * 18 17 16 40 40 H 1.08995 * 109.47296 * 60.00089 * 18 17 16 41 41 H 0.96699 * 114.00585 * 300.70003 * 20 19 18 42 42 H 1.09002 * 110.32938 * 237.79292 * 21 19 18 43 43 H 1.09003 * 110.32260 * 359.97438 * 21 19 18 44 44 H 1.08998 * 110.41092 * 142.63198 * 22 21 19 45 45 H 1.09004 * 110.41198 * 265.07581 * 22 21 19 46 46 H 1.08996 * 109.47148 * 59.86956 * 24 23 22 47 47 H 1.08999 * 109.47250 * 179.87746 * 24 23 22 48 48 H 1.09005 * 109.46586 * 299.87468 * 24 23 22 49 49 H 1.08998 * 110.41517 * 280.70616 * 25 23 22 50 50 H 1.08998 * 110.41389 * 158.25814 * 25 23 22 51 51 H 1.07997 * 119.96197 * 179.70657 * 26 15 14 52 52 H 1.08001 * 120.03420 * 180.27096 * 27 26 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4487 1.7037 -1.4208 5 1 2.0981 1.0956 -2.2417 6 6 3.1269 2.8773 -1.6729 7 7 3.5542 3.6176 -0.6734 8 14 3.4377 3.4168 -3.4341 9 1 2.3078 4.2604 -3.9000 10 1 4.6983 4.1991 -3.4970 11 1 3.5539 2.2199 -4.3052 12 6 2.1634 -1.2096 0.0005 13 6 1.4704 -2.4135 0.0016 14 6 2.1641 -3.6077 0.0027 15 6 3.5469 -3.6059 0.0032 16 6 4.3004 -4.9110 0.0050 17 7 4.5457 -5.3366 -1.3795 18 6 5.2805 -6.6080 -1.4170 19 6 5.5173 -7.0176 -2.8720 20 8 6.3360 -6.0500 -3.5321 21 6 6.1767 -8.4106 -2.9361 22 6 5.1732 -9.2944 -3.7075 23 7 4.3751 -8.3368 -4.5155 24 6 3.0900 -8.9268 -4.9134 25 6 4.1708 -7.1769 -3.6101 26 6 4.2399 -2.4092 0.0084 27 6 3.5524 -1.2114 0.0015 28 1 -0.3633 0.0001 1.0277 29 1 -0.3633 0.8899 -0.5138 30 1 -0.3633 -0.8900 -0.5137 31 1 1.6084 2.0284 0.5137 32 1 3.1499 1.1384 0.5138 33 1 4.0310 4.4434 -0.8506 34 1 0.3903 -2.4156 0.0012 35 1 1.6259 -4.5441 0.0039 36 1 3.7111 -5.6701 0.5194 37 1 5.2526 -4.7801 0.5190 38 1 5.0349 -4.6213 -1.8964 39 1 6.2395 -6.4885 -0.9129 40 1 4.6985 -7.3791 -0.9123 41 1 5.9609 -5.1588 -3.5425 42 1 7.1241 -8.3568 -3.4726 43 1 6.3322 -8.8024 -1.9309 44 1 5.7020 -9.9918 -4.3572 45 1 4.5296 -9.8342 -3.0127 46 1 2.5215 -9.1940 -4.0227 47 1 2.5250 -8.2039 -5.5019 48 1 3.2701 -9.8204 -5.5111 49 1 3.3704 -7.3852 -2.9001 50 1 3.9449 -6.2798 -4.1865 51 1 5.3199 -2.4114 0.0136 52 1 4.0943 -0.2772 0.0011 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000762568640.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:36:52 Heat of formation + Delta-G solvation = -27.636265 kcal Electronic energy + Delta-G solvation = -28529.760552 eV Core-core repulsion = 24721.086087 eV Total energy + Delta-G solvation = -3808.674465 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -40.76499 -40.36279 -37.91064 -37.07736 -35.74711 -34.69590 -32.70077 -31.87542 -31.37509 -29.70123 -29.37092 -27.72633 -26.78861 -25.67497 -24.31249 -23.48612 -22.93644 -22.24723 -21.21937 -20.91268 -18.63673 -18.30902 -17.82503 -17.25996 -16.84767 -16.74302 -16.37241 -15.97806 -15.78228 -15.46158 -15.32332 -15.19532 -14.97376 -14.58208 -14.35969 -14.29840 -14.19539 -14.04626 -13.60631 -13.39082 -13.23483 -13.13673 -13.02104 -12.93729 -12.80554 -12.65691 -12.53833 -12.42392 -12.33463 -12.28675 -12.19037 -12.02336 -11.75909 -11.49504 -11.38004 -10.88767 -10.64561 -10.41326 -9.65771 -9.43846 -9.35948 -8.36408 -7.80137 -6.37735 0.72094 0.84703 1.36694 1.38012 1.49041 2.34111 2.63807 2.96069 3.05930 3.08467 3.22937 3.39599 3.68537 3.79242 3.96166 4.08819 4.12169 4.24029 4.26459 4.37212 4.41359 4.47714 4.51390 4.53892 4.64636 4.68331 4.72138 4.72952 4.75655 4.78726 4.85892 4.87788 4.92163 4.92815 5.00006 5.02057 5.13584 5.13674 5.17664 5.20548 5.34138 5.59511 5.67671 5.70635 5.82808 5.92246 6.02306 6.06455 6.06968 6.23456 6.36622 6.50271 6.77628 6.82688 6.94258 7.34262 8.82902 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.012815 B = 0.002397 C = 0.002246 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2184.470729 B =11677.455412 C =12463.325598 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.098 3.902 2 N -0.632 5.632 3 C 0.267 3.733 4 C -0.540 4.540 5 H 0.049 0.951 6 C 0.013 3.987 7 N -0.927 5.927 8 Si 0.961 3.039 9 H -0.271 1.271 10 H -0.279 1.279 11 H -0.271 1.271 12 C 0.212 3.788 13 C -0.219 4.219 14 C -0.047 4.047 15 C -0.159 4.159 16 C 0.123 3.877 17 N -0.687 5.687 18 C 0.044 3.956 19 C 0.131 3.869 20 O -0.568 6.568 21 C -0.113 4.113 22 C 0.033 3.967 23 N -0.537 5.537 24 C 0.014 3.986 25 C 0.027 3.973 26 C -0.067 4.067 27 C -0.216 4.216 28 H 0.052 0.948 29 H 0.055 0.945 30 H 0.078 0.922 31 H 0.008 0.992 32 H 0.011 0.989 33 H 0.267 0.733 34 H 0.131 0.869 35 H 0.140 0.860 36 H 0.088 0.912 37 H 0.038 0.962 38 H 0.338 0.662 39 H 0.041 0.959 40 H 0.091 0.909 41 H 0.383 0.617 42 H 0.075 0.925 43 H 0.098 0.902 44 H 0.088 0.912 45 H 0.058 0.942 46 H 0.035 0.965 47 H 0.065 0.935 48 H 0.077 0.923 49 H 0.059 0.941 50 H 0.071 0.929 51 H 0.123 0.877 52 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.518 -26.637 -1.160 26.667 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 N -0.340 5.340 3 C 0.145 3.855 4 C -0.578 4.578 5 H 0.067 0.933 6 C -0.187 4.187 7 N -0.567 5.567 8 Si 0.786 3.214 9 H -0.197 1.197 10 H -0.204 1.204 11 H -0.196 1.196 12 C 0.107 3.893 13 C -0.241 4.241 14 C -0.066 4.066 15 C -0.162 4.162 16 C -0.005 4.005 17 N -0.319 5.319 18 C -0.086 4.086 19 C 0.090 3.910 20 O -0.376 6.376 21 C -0.151 4.151 22 C -0.095 4.095 23 N -0.261 5.261 24 C -0.135 4.135 25 C -0.101 4.101 26 C -0.086 4.086 27 C -0.239 4.239 28 H 0.071 0.929 29 H 0.074 0.926 30 H 0.097 0.903 31 H 0.026 0.974 32 H 0.029 0.971 33 H 0.076 0.924 34 H 0.149 0.851 35 H 0.158 0.842 36 H 0.106 0.894 37 H 0.056 0.944 38 H 0.156 0.844 39 H 0.059 0.941 40 H 0.110 0.890 41 H 0.232 0.768 42 H 0.093 0.907 43 H 0.116 0.884 44 H 0.106 0.894 45 H 0.076 0.924 46 H 0.053 0.947 47 H 0.084 0.916 48 H 0.096 0.904 49 H 0.077 0.923 50 H 0.089 0.911 51 H 0.141 0.859 52 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 0.512 -26.949 -1.763 27.011 hybrid contribution 0.265 1.856 0.214 1.887 sum 0.777 -25.092 -1.550 25.152 Atomic orbital electron populations 1.21595 0.79463 1.02504 1.00935 1.46971 1.05613 1.03771 1.77671 1.18767 0.91051 0.80275 0.95423 1.21761 1.36323 1.06468 0.93296 0.93314 1.25774 0.95100 0.96347 1.01448 1.70031 1.39035 1.14787 1.32805 0.85512 0.77902 0.78283 0.79741 1.19652 1.20435 1.19600 1.18245 0.91694 0.86483 0.92851 1.20812 1.00024 0.90793 1.12518 1.20865 0.93505 0.96968 0.95293 1.19484 0.93868 0.93911 1.08888 1.20609 0.97833 0.93103 0.88985 1.60580 1.51835 1.05405 1.14040 1.22646 0.97105 0.93127 0.95732 1.22020 0.89422 0.89582 0.90003 1.86551 1.49128 1.22055 1.79864 1.22364 0.99264 0.91632 1.01864 1.23177 0.95587 0.94959 0.95733 1.65364 1.17036 1.06945 1.36779 1.22531 0.90148 1.00383 1.00434 1.23580 0.97082 0.94880 0.94542 1.20835 0.99312 0.91287 0.97181 1.20756 0.93162 0.98565 1.11427 0.92946 0.92579 0.90349 0.97357 0.97101 0.92394 0.85147 0.84200 0.89387 0.94387 0.84378 0.94084 0.89030 0.76773 0.90667 0.88356 0.89391 0.92393 0.94689 0.91606 0.90397 0.92317 0.91056 0.85930 0.88799 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 3.40 10.19 127.77 1.30 4.70 16 2 N -0.63 -27.62 2.99 -726.59 -2.17 -29.80 16 3 C 0.27 14.02 4.91 85.63 0.42 14.44 16 4 C -0.54 -30.35 9.39 25.60 0.24 -30.11 16 5 H 0.05 2.78 7.81 -2.91 -0.02 2.76 16 6 C 0.01 0.70 5.46 84.65 0.46 1.16 16 7 N -0.93 -54.46 13.29 21.45 0.28 -54.18 16 8 Si 0.96 44.17 29.54 68.60 2.03 46.19 16 9 H -0.27 -12.01 7.11 99.48 0.71 -11.31 16 10 H -0.28 -12.47 7.11 99.48 0.71 -11.77 16 11 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 12 C 0.21 8.54 6.55 38.21 0.25 8.79 16 13 C -0.22 -7.06 9.21 22.40 0.21 -6.85 16 14 C -0.05 -1.28 9.69 22.25 0.22 -1.06 16 15 C -0.16 -4.23 5.39 -19.84 -0.11 -4.33 16 16 C 0.12 2.38 5.81 85.56 0.50 2.88 16 17 N -0.69 -12.40 6.10 -517.92 -3.16 -15.55 16 18 C 0.04 0.66 4.56 86.31 0.39 1.05 16 19 C 0.13 2.24 1.21 -9.90 -0.01 2.22 16 20 O -0.57 -11.86 12.94 -148.98 -1.93 -13.79 16 21 C -0.11 -1.65 6.45 31.49 0.20 -1.45 16 22 C 0.03 0.46 6.49 86.45 0.56 1.02 16 23 N -0.54 -9.75 5.66 -907.63 -5.14 -14.89 16 24 C 0.01 0.20 9.53 127.69 1.22 1.41 16 25 C 0.03 0.50 5.41 86.45 0.47 0.97 16 26 C -0.07 -2.15 9.69 22.25 0.22 -1.93 16 27 C -0.22 -8.85 9.21 22.40 0.21 -8.64 16 28 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 29 H 0.06 2.03 8.07 -2.39 -0.02 2.01 16 30 H 0.08 2.30 6.20 -2.39 -0.01 2.29 16 31 H 0.01 0.47 8.07 -2.39 -0.02 0.45 16 32 H 0.01 0.62 6.20 -2.38 -0.01 0.61 16 33 H 0.27 14.77 8.31 -92.71 -0.77 14.00 16 34 H 0.13 3.68 6.14 -2.91 -0.02 3.66 16 35 H 0.14 2.95 8.06 -2.91 -0.02 2.93 16 36 H 0.09 1.47 8.08 -2.38 -0.02 1.46 16 37 H 0.04 0.71 8.08 -2.39 -0.02 0.69 16 38 H 0.34 6.47 7.27 -89.69 -0.65 5.82 16 39 H 0.04 0.63 8.14 -2.39 -0.02 0.61 16 40 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 41 H 0.38 6.62 7.63 -74.06 -0.57 6.05 16 42 H 0.07 1.29 7.98 -2.39 -0.02 1.27 16 43 H 0.10 1.02 7.71 -2.39 -0.02 1.00 16 44 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 45 H 0.06 0.66 7.97 -2.39 -0.02 0.64 16 46 H 0.03 0.46 7.97 -2.39 -0.02 0.44 16 47 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 48 H 0.08 0.95 8.14 -2.38 -0.02 0.93 16 49 H 0.06 1.06 7.62 -2.39 -0.02 1.04 16 50 H 0.07 1.53 8.08 -2.39 -0.02 1.51 16 51 H 0.12 3.46 8.06 -2.91 -0.02 3.44 16 52 H 0.09 4.48 6.14 -2.91 -0.02 4.46 16 Total: -1.00 -65.87 411.32 -3.66 -69.53 By element: Atomic # 1 Polarization: 28.52 SS G_CDS: -0.31 Total: 28.21 kcal Atomic # 6 Polarization: -22.47 SS G_CDS: 6.74 Total: -15.73 kcal Atomic # 7 Polarization: -104.23 SS G_CDS: -10.18 Total: -114.41 kcal Atomic # 8 Polarization: -11.86 SS G_CDS: -1.93 Total: -13.79 kcal Atomic # 14 Polarization: 44.17 SS G_CDS: 2.03 Total: 46.19 kcal Total: -65.87 -3.66 -69.53 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000762568640.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.891 kcal (2) G-P(sol) polarization free energy of solvation -65.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.981 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.655 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.527 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.636 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds