Wall clock time and date at job start Tue Mar 31 2020 18:12:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46901 * 109.47426 * 2 1 4 4 C 1.46901 * 110.99481 * 289.68305 * 3 2 1 5 5 C 1.50709 * 109.46990 * 160.42674 * 4 3 2 6 6 O 1.21281 * 119.99819 * 354.59178 * 5 4 3 7 7 N 1.34767 * 119.99908 * 174.59254 * 5 4 3 8 8 C 1.46507 * 119.99876 * 180.02562 * 7 5 4 9 9 C 1.46504 * 120.00449 * 359.97438 * 7 5 4 10 10 C 1.46901 * 111.00274 * 165.73356 * 3 2 1 11 11 C 1.50701 * 109.46854 * 293.95353 * 10 3 2 12 12 C 1.38285 * 119.92778 * 89.99977 * 11 10 3 13 13 C 1.38099 * 120.07311 * 180.02562 * 12 11 10 14 14 C 1.38908 * 119.92887 * 0.02562 * 13 12 11 15 15 N 1.39677 * 120.07852 * 179.97438 * 14 13 12 16 16 C 1.46503 * 119.99829 * 359.97438 * 15 14 13 17 17 C 1.46500 * 120.00257 * 180.02562 * 15 14 13 18 18 C 1.50698 * 109.47242 * 89.99996 * 17 15 14 19 19 H 1.08000 * 119.99877 * 359.97438 * 18 17 15 20 20 C 1.37882 * 119.99913 * 180.02562 * 18 17 15 21 21 N 1.31511 * 119.99778 * 359.97438 * 20 18 17 22 22 Si 1.86790 * 119.99842 * 180.02562 * 20 18 17 23 23 H 1.48498 * 109.47407 * 60.00027 * 22 20 18 24 24 H 1.48505 * 109.47226 * 179.97438 * 22 20 18 25 25 H 1.48505 * 109.47196 * 299.99668 * 22 20 18 26 26 C 1.38915 * 119.85109 * 0.25200 * 14 13 12 27 27 C 1.38108 * 119.91740 * 359.49322 * 26 14 13 28 28 H 1.09006 * 109.47000 * 305.84515 * 1 2 3 29 29 H 1.09004 * 109.46899 * 65.83991 * 1 2 3 30 30 H 1.08993 * 109.47567 * 185.84340 * 1 2 3 31 31 H 1.08999 * 109.47253 * 239.99297 * 2 1 3 32 32 H 1.09005 * 109.47150 * 119.99492 * 2 1 3 33 33 H 1.09001 * 109.47471 * 280.42596 * 4 3 2 34 34 H 1.09003 * 109.46963 * 40.43276 * 4 3 2 35 35 H 1.08999 * 109.46721 * 89.99833 * 8 7 5 36 36 H 1.08998 * 109.47222 * 209.99793 * 8 7 5 37 37 H 1.08998 * 109.47034 * 330.00081 * 8 7 5 38 38 H 1.09006 * 109.46711 * 60.00128 * 9 7 5 39 39 H 1.09000 * 109.47063 * 180.02562 * 9 7 5 40 40 H 1.09000 * 109.47190 * 300.00750 * 9 7 5 41 41 H 1.08992 * 109.47140 * 173.95244 * 10 3 2 42 42 H 1.08997 * 109.46933 * 53.94768 * 10 3 2 43 43 H 1.07995 * 119.95927 * 0.04064 * 12 11 10 44 44 H 1.08000 * 120.03733 * 179.97438 * 13 12 11 45 45 H 1.09000 * 109.47319 * 270.00248 * 16 15 14 46 46 H 1.09006 * 109.46925 * 30.00146 * 16 15 14 47 47 H 1.08999 * 109.46846 * 149.99684 * 16 15 14 48 48 H 1.08999 * 109.47043 * 210.00521 * 17 15 14 49 49 H 1.09004 * 109.46938 * 329.99732 * 17 15 14 50 50 H 0.96998 * 120.00070 * 180.02562 * 21 20 18 51 51 H 1.07992 * 120.04025 * 179.72708 * 26 14 13 52 52 H 1.08012 * 119.95855 * 180.25848 * 27 26 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.7597 2.0352 -1.2914 5 6 1.8172 3.5315 -1.1210 6 8 1.9539 4.0111 -0.0154 7 7 1.7167 4.3366 -2.1970 8 6 1.7732 5.7912 -2.0315 9 6 1.5521 3.7573 -3.5326 10 6 3.4483 1.4383 0.3380 11 6 3.6445 0.9886 1.7629 12 6 3.8651 -0.3480 2.0404 13 6 4.0447 -0.7634 3.3451 14 6 4.0030 0.1629 4.3794 15 7 4.1838 -0.2538 5.7002 16 6 4.4171 -1.6696 5.9961 17 6 4.1389 0.7245 6.7897 18 6 2.7234 0.8546 7.2901 19 1 1.9358 0.2676 6.8411 20 6 2.4335 1.7238 8.3204 21 7 3.3925 2.4390 8.8667 22 14 0.6791 1.8846 8.9411 23 1 0.2077 0.5676 9.4396 24 1 0.6336 2.8764 10.0455 25 1 -0.1988 2.3372 7.8322 26 6 3.7754 1.5041 4.0977 27 6 3.6019 1.9134 2.7901 28 1 -0.3633 0.6018 0.8331 29 1 -0.3633 0.4206 -0.9377 30 1 -0.3634 -1.0222 0.1046 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8901 33 1 2.5135 1.7226 -2.0140 34 1 0.7712 1.7481 -1.6501 35 1 2.8081 6.1253 -2.1055 36 1 1.1804 6.2689 -2.8115 37 1 1.3732 6.0614 -1.0542 38 1 0.6380 3.1642 -3.5612 39 1 1.4900 4.5572 -4.2704 40 1 2.4063 3.1194 -3.7597 41 1 3.8102 2.4603 0.2264 42 1 4.0045 0.7808 -0.3303 43 1 3.8972 -1.0677 1.2359 44 1 4.2166 -1.8075 3.5613 45 1 3.4621 -2.1684 6.1615 46 1 4.9302 -2.1367 5.1555 47 1 5.0325 -1.7569 6.8915 48 1 4.7829 0.3916 7.6037 49 1 4.4855 1.6912 6.4244 50 1 3.1887 3.0502 9.5918 51 1 3.7380 2.2262 4.8998 52 1 3.4290 2.9566 2.5699 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000768309061.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:12:16 Heat of formation + Delta-G solvation = 16.283042 kcal Electronic energy + Delta-G solvation = -29094.218711 eV Core-core repulsion = 25287.448730 eV Total energy + Delta-G solvation = -3806.769981 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.10760 -38.99335 -37.36696 -35.60884 -35.31971 -32.66898 -31.27432 -30.53017 -30.25127 -28.61448 -27.73003 -27.36813 -25.88697 -24.83746 -24.03496 -22.23705 -21.67321 -20.83071 -19.52776 -19.32412 -17.25264 -16.68799 -16.44680 -16.36735 -16.14509 -15.24828 -15.18470 -14.95838 -14.42485 -14.14209 -14.09854 -13.71468 -13.57430 -13.30112 -13.20208 -13.06302 -12.99892 -12.88865 -12.77577 -12.42141 -12.25157 -12.08017 -12.03566 -11.82693 -11.62405 -11.39529 -11.21683 -11.16808 -10.93082 -10.85439 -10.59442 -10.55068 -10.16906 -9.85293 -9.78781 -9.66198 -8.89419 -8.74493 -8.43068 -8.22921 -8.12619 -6.38148 -5.94283 -4.09853 2.21273 2.30860 2.58937 2.75363 3.34272 3.38016 3.42402 3.95425 4.22907 4.39544 4.48370 4.69579 4.75200 4.83721 4.96844 5.02078 5.07945 5.12191 5.20308 5.26432 5.28525 5.33448 5.40634 5.46241 5.54337 5.61044 5.65193 5.70679 5.78435 5.84250 5.93914 6.08681 6.10738 6.21405 6.21723 6.26813 6.34889 6.49203 6.55130 6.75488 6.89918 7.05078 7.10510 7.11762 7.23678 7.32690 7.36187 7.50609 7.71771 7.88240 8.15314 8.23126 8.34862 8.57059 8.98695 9.56621 11.02766 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.012123 B = 0.002848 C = 0.002590 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2309.066543 B = 9830.800481 C =10809.062301 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.047 3.953 3 N -0.515 5.515 4 C 0.037 3.963 5 C 0.509 3.491 6 O -0.504 6.504 7 N -0.632 5.632 8 C 0.087 3.913 9 C 0.081 3.919 10 C 0.115 3.885 11 C -0.164 4.164 12 C -0.071 4.071 13 C -0.224 4.224 14 C 0.242 3.758 15 N -0.617 5.617 16 C 0.101 3.899 17 C 0.250 3.750 18 C -0.530 4.530 19 H 0.058 0.942 20 C 0.061 3.939 21 N -0.896 5.896 22 Si 0.896 3.104 23 H -0.277 1.277 24 H -0.287 1.287 25 H -0.275 1.275 26 C -0.188 4.188 27 C -0.044 4.044 28 H 0.067 0.933 29 H 0.045 0.955 30 H 0.058 0.942 31 H 0.028 0.972 32 H 0.092 0.908 33 H 0.059 0.941 34 H 0.102 0.898 35 H 0.052 0.948 36 H 0.066 0.934 37 H 0.077 0.923 38 H 0.060 0.940 39 H 0.076 0.924 40 H 0.059 0.941 41 H 0.077 0.923 42 H 0.029 0.971 43 H 0.104 0.896 44 H 0.112 0.888 45 H 0.039 0.961 46 H 0.052 0.948 47 H 0.060 0.940 48 H 0.029 0.971 49 H 0.036 0.964 50 H 0.264 0.736 51 H 0.131 0.869 52 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.694 -1.830 -26.409 26.526 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.080 4.080 3 N -0.239 5.239 4 C -0.094 4.094 5 C 0.296 3.704 6 O -0.377 6.377 7 N -0.370 5.370 8 C -0.056 4.056 9 C -0.062 4.062 10 C -0.012 4.012 11 C -0.167 4.167 12 C -0.090 4.090 13 C -0.247 4.247 14 C 0.135 3.865 15 N -0.323 5.323 16 C -0.043 4.043 17 C 0.130 3.870 18 C -0.569 4.569 19 H 0.076 0.924 20 C -0.141 4.141 21 N -0.535 5.535 22 Si 0.723 3.277 23 H -0.203 1.203 24 H -0.212 1.212 25 H -0.200 1.200 26 C -0.211 4.211 27 C -0.063 4.063 28 H 0.086 0.914 29 H 0.064 0.936 30 H 0.077 0.923 31 H 0.046 0.954 32 H 0.110 0.890 33 H 0.077 0.923 34 H 0.120 0.880 35 H 0.070 0.930 36 H 0.085 0.915 37 H 0.096 0.904 38 H 0.078 0.922 39 H 0.095 0.905 40 H 0.078 0.922 41 H 0.095 0.905 42 H 0.047 0.953 43 H 0.122 0.878 44 H 0.129 0.871 45 H 0.058 0.942 46 H 0.071 0.929 47 H 0.079 0.921 48 H 0.047 0.953 49 H 0.054 0.946 50 H 0.074 0.926 51 H 0.148 0.852 52 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -1.797 -1.243 -25.031 25.126 hybrid contribution -0.682 -0.294 -0.305 0.803 sum -2.479 -1.536 -25.336 25.503 Atomic orbital electron populations 1.21802 0.95179 1.01613 1.01946 1.22209 0.95892 0.88426 1.01511 1.61693 1.18112 1.16717 1.27405 1.22003 1.02951 0.91789 0.92664 1.20723 0.76527 0.89193 0.83996 1.90755 1.46271 1.76332 1.24330 1.47830 1.74848 1.06968 1.07340 1.21628 1.01456 0.79337 1.03193 1.21761 1.01362 0.99501 0.83591 1.20850 0.86233 1.00627 0.93462 1.19062 1.10276 0.93462 0.93860 1.20482 0.98739 0.94534 0.95273 1.20476 1.13539 0.98433 0.92220 1.17937 0.91175 0.92841 0.84573 1.47077 1.74153 1.07186 1.03882 1.21439 0.99839 0.82966 1.00035 1.19283 0.96851 0.87327 0.83535 1.21540 0.94218 1.23713 1.17384 0.92352 1.24952 0.97430 0.95357 0.96321 1.69918 1.32104 1.26077 1.25440 0.86585 0.84841 0.77798 0.78427 1.20300 1.21218 1.20007 1.20909 1.08175 0.94934 0.97043 1.20710 0.95247 0.98832 0.91543 0.91366 0.93560 0.92346 0.95383 0.88981 0.92333 0.88025 0.92952 0.91528 0.90409 0.92175 0.90511 0.92219 0.90492 0.95295 0.87828 0.87051 0.94202 0.92900 0.92149 0.95294 0.94640 0.92642 0.85156 0.86707 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.58 9.85 37.16 0.37 -1.22 16 2 C 0.05 0.55 5.50 -3.83 -0.02 0.53 16 3 N -0.51 -6.90 4.00 -237.51 -0.95 -7.85 16 4 C 0.04 0.38 4.17 -4.97 -0.02 0.36 16 5 C 0.51 6.34 7.23 -10.99 -0.08 6.26 16 6 O -0.50 -8.68 15.07 5.56 0.08 -8.59 16 7 N -0.63 -5.76 3.27 -189.50 -0.62 -6.38 16 8 C 0.09 0.71 10.41 59.85 0.62 1.33 16 9 C 0.08 0.40 9.73 59.85 0.58 0.98 16 10 C 0.11 1.63 4.76 -4.97 -0.02 1.61 16 11 C -0.16 -2.77 4.93 -104.59 -0.52 -3.28 16 12 C -0.07 -1.14 7.83 -39.62 -0.31 -1.45 16 13 C -0.22 -4.03 9.21 -39.38 -0.36 -4.39 16 14 C 0.24 5.13 6.55 -83.79 -0.55 4.58 16 15 N -0.62 -13.74 2.99 -180.99 -0.54 -14.28 16 16 C 0.10 1.84 10.23 59.85 0.61 2.46 16 17 C 0.25 6.50 4.95 -5.19 -0.03 6.47 16 18 C -0.53 -15.00 9.39 -34.44 -0.32 -15.33 16 19 H 0.06 1.69 7.81 -52.49 -0.41 1.28 16 20 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 21 N -0.90 -26.46 13.29 55.43 0.74 -25.73 16 22 Si 0.90 22.11 29.54 -169.99 -5.02 17.09 16 23 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 24 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 25 H -0.27 -6.81 7.11 56.52 0.40 -6.40 16 26 C -0.19 -4.11 9.21 -39.38 -0.36 -4.47 16 27 C -0.04 -0.86 9.69 -39.61 -0.38 -1.24 16 28 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 29 H 0.05 0.41 6.65 -51.93 -0.35 0.07 16 30 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.03 0.27 8.07 -51.93 -0.42 -0.14 16 32 H 0.09 1.24 5.22 -51.93 -0.27 0.97 16 33 H 0.06 0.49 7.48 -51.93 -0.39 0.10 16 34 H 0.10 0.87 6.18 -51.93 -0.32 0.55 16 35 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 36 H 0.07 0.36 7.92 -51.93 -0.41 -0.05 16 37 H 0.08 0.80 7.42 -51.93 -0.39 0.42 16 38 H 0.06 0.24 8.03 -51.93 -0.42 -0.18 16 39 H 0.08 0.24 7.79 -51.93 -0.40 -0.16 16 40 H 0.06 0.25 7.69 -51.93 -0.40 -0.15 16 41 H 0.08 1.18 6.81 -51.93 -0.35 0.83 16 42 H 0.03 0.36 8.06 -51.93 -0.42 -0.06 16 43 H 0.10 1.38 7.77 -52.49 -0.41 0.97 16 44 H 0.11 1.80 6.14 -52.49 -0.32 1.48 16 45 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 46 H 0.05 0.81 6.20 -51.93 -0.32 0.49 16 47 H 0.06 1.05 7.89 -51.93 -0.41 0.64 16 48 H 0.03 0.78 7.89 -51.93 -0.41 0.37 16 49 H 0.04 0.98 6.21 -51.93 -0.32 0.66 16 50 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 51 H 0.13 3.14 6.15 -52.49 -0.32 2.82 16 52 H 0.11 2.24 8.06 -52.48 -0.42 1.81 16 LS Contribution 410.91 15.07 6.19 6.19 Total: -1.00 -33.61 410.91 -9.72 -43.33 By element: Atomic # 1 Polarization: 10.08 SS G_CDS: -8.71 Total: 1.37 kcal Atomic # 6 Polarization: -4.26 SS G_CDS: -0.89 Total: -5.15 kcal Atomic # 7 Polarization: -52.86 SS G_CDS: -1.37 Total: -54.24 kcal Atomic # 8 Polarization: -8.68 SS G_CDS: 0.08 Total: -8.59 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -5.02 Total: 17.09 kcal Total LS contribution 6.19 Total: 6.19 kcal Total: -33.61 -9.72 -43.33 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000768309061.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.611 kcal (2) G-P(sol) polarization free energy of solvation -33.606 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.005 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.722 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.327 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.283 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds