Wall clock time and date at job start Tue Mar 31 2020 18:12:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46901 * 109.47426 * 2 1 4 4 C 1.46901 * 110.99481 * 289.68305 * 3 2 1 5 5 C 1.50709 * 109.46990 * 160.42674 * 4 3 2 6 6 O 1.21281 * 119.99819 * 354.59178 * 5 4 3 7 7 N 1.34767 * 119.99908 * 174.59254 * 5 4 3 8 8 C 1.46507 * 119.99876 * 180.02562 * 7 5 4 9 9 C 1.46504 * 120.00449 * 359.97438 * 7 5 4 10 10 C 1.46901 * 111.00274 * 165.73356 * 3 2 1 11 11 C 1.50701 * 109.46854 * 293.95353 * 10 3 2 12 12 C 1.38285 * 119.92778 * 89.99977 * 11 10 3 13 13 C 1.38099 * 120.07311 * 180.02562 * 12 11 10 14 14 C 1.38908 * 119.92887 * 0.02562 * 13 12 11 15 15 N 1.39677 * 120.07852 * 179.97438 * 14 13 12 16 16 C 1.46503 * 119.99829 * 359.97438 * 15 14 13 17 17 C 1.46500 * 120.00257 * 180.02562 * 15 14 13 18 18 C 1.50698 * 109.47242 * 89.99996 * 17 15 14 19 19 H 1.08000 * 119.99877 * 359.97438 * 18 17 15 20 20 C 1.37882 * 119.99913 * 180.02562 * 18 17 15 21 21 N 1.31511 * 119.99778 * 359.97438 * 20 18 17 22 22 Si 1.86790 * 119.99842 * 180.02562 * 20 18 17 23 23 H 1.48498 * 109.47407 * 60.00027 * 22 20 18 24 24 H 1.48505 * 109.47226 * 179.97438 * 22 20 18 25 25 H 1.48505 * 109.47196 * 299.99668 * 22 20 18 26 26 C 1.38915 * 119.85109 * 0.25200 * 14 13 12 27 27 C 1.38108 * 119.91740 * 359.49322 * 26 14 13 28 28 H 1.09006 * 109.47000 * 305.84515 * 1 2 3 29 29 H 1.09004 * 109.46899 * 65.83991 * 1 2 3 30 30 H 1.08993 * 109.47567 * 185.84340 * 1 2 3 31 31 H 1.08999 * 109.47253 * 239.99297 * 2 1 3 32 32 H 1.09005 * 109.47150 * 119.99492 * 2 1 3 33 33 H 1.09001 * 109.47471 * 280.42596 * 4 3 2 34 34 H 1.09003 * 109.46963 * 40.43276 * 4 3 2 35 35 H 1.08999 * 109.46721 * 89.99833 * 8 7 5 36 36 H 1.08998 * 109.47222 * 209.99793 * 8 7 5 37 37 H 1.08998 * 109.47034 * 330.00081 * 8 7 5 38 38 H 1.09006 * 109.46711 * 60.00128 * 9 7 5 39 39 H 1.09000 * 109.47063 * 180.02562 * 9 7 5 40 40 H 1.09000 * 109.47190 * 300.00750 * 9 7 5 41 41 H 1.08992 * 109.47140 * 173.95244 * 10 3 2 42 42 H 1.08997 * 109.46933 * 53.94768 * 10 3 2 43 43 H 1.07995 * 119.95927 * 0.04064 * 12 11 10 44 44 H 1.08000 * 120.03733 * 179.97438 * 13 12 11 45 45 H 1.09000 * 109.47319 * 270.00248 * 16 15 14 46 46 H 1.09006 * 109.46925 * 30.00146 * 16 15 14 47 47 H 1.08999 * 109.46846 * 149.99684 * 16 15 14 48 48 H 1.08999 * 109.47043 * 210.00521 * 17 15 14 49 49 H 1.09004 * 109.46938 * 329.99732 * 17 15 14 50 50 H 0.96998 * 120.00070 * 180.02562 * 21 20 18 51 51 H 1.07992 * 120.04025 * 179.72708 * 26 14 13 52 52 H 1.08012 * 119.95855 * 180.25848 * 27 26 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.7597 2.0352 -1.2914 5 6 1.8172 3.5315 -1.1210 6 8 1.9539 4.0111 -0.0154 7 7 1.7167 4.3366 -2.1970 8 6 1.7732 5.7912 -2.0315 9 6 1.5521 3.7573 -3.5326 10 6 3.4483 1.4383 0.3380 11 6 3.6445 0.9886 1.7629 12 6 3.8651 -0.3480 2.0404 13 6 4.0447 -0.7634 3.3451 14 6 4.0030 0.1629 4.3794 15 7 4.1838 -0.2538 5.7002 16 6 4.4171 -1.6696 5.9961 17 6 4.1389 0.7245 6.7897 18 6 2.7234 0.8546 7.2901 19 1 1.9358 0.2676 6.8411 20 6 2.4335 1.7238 8.3204 21 7 3.3925 2.4390 8.8667 22 14 0.6791 1.8846 8.9411 23 1 0.2077 0.5676 9.4396 24 1 0.6336 2.8764 10.0455 25 1 -0.1988 2.3372 7.8322 26 6 3.7754 1.5041 4.0977 27 6 3.6019 1.9134 2.7901 28 1 -0.3633 0.6018 0.8331 29 1 -0.3633 0.4206 -0.9377 30 1 -0.3634 -1.0222 0.1046 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8901 33 1 2.5135 1.7226 -2.0140 34 1 0.7712 1.7481 -1.6501 35 1 2.8081 6.1253 -2.1055 36 1 1.1804 6.2689 -2.8115 37 1 1.3732 6.0614 -1.0542 38 1 0.6380 3.1642 -3.5612 39 1 1.4900 4.5572 -4.2704 40 1 2.4063 3.1194 -3.7597 41 1 3.8102 2.4603 0.2264 42 1 4.0045 0.7808 -0.3303 43 1 3.8972 -1.0677 1.2359 44 1 4.2166 -1.8075 3.5613 45 1 3.4621 -2.1684 6.1615 46 1 4.9302 -2.1367 5.1555 47 1 5.0325 -1.7569 6.8915 48 1 4.7829 0.3916 7.6037 49 1 4.4855 1.6912 6.4244 50 1 3.1887 3.0502 9.5918 51 1 3.7380 2.2262 4.8998 52 1 3.4290 2.9566 2.5699 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000768309061.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:12:15 Heat of formation + Delta-G solvation = -4.964584 kcal Electronic energy + Delta-G solvation = -29095.140077 eV Core-core repulsion = 25287.448730 eV Total energy + Delta-G solvation = -3807.691347 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.05149 -40.39425 -38.50685 -36.87549 -36.40753 -34.77820 -32.38339 -31.92533 -31.46288 -29.72946 -29.39319 -28.16280 -27.05088 -26.05096 -25.40708 -23.84159 -23.10829 -21.92657 -21.02500 -20.15215 -18.66249 -18.13758 -18.05791 -17.20131 -17.14506 -16.89340 -16.31886 -16.12105 -15.83135 -15.47604 -15.31711 -15.18761 -14.69617 -14.54686 -14.35315 -14.32491 -14.02626 -13.98758 -13.62154 -13.44940 -13.41725 -13.21509 -13.15016 -13.07092 -12.90082 -12.79949 -12.69036 -12.63933 -12.51821 -12.28444 -12.18730 -11.96229 -11.77567 -11.60960 -11.39862 -10.79345 -10.65373 -10.38471 -9.64813 -9.61534 -9.11560 -8.37254 -7.80242 -6.38632 0.70823 0.83028 1.33768 1.37411 1.44969 1.71080 2.05663 2.32965 2.63190 2.92163 3.04557 3.35650 3.68795 4.02364 4.04057 4.15038 4.22410 4.29495 4.33031 4.38234 4.42337 4.45262 4.48350 4.52155 4.54392 4.67558 4.70974 4.72274 4.77604 4.81559 4.87601 4.91291 4.92583 4.97062 4.99226 5.02767 5.11590 5.17672 5.20893 5.32844 5.41788 5.57827 5.58449 5.65435 5.68581 5.95153 6.06235 6.07586 6.20436 6.24410 6.47486 6.49383 6.81711 6.94117 7.31202 7.32853 8.81848 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.012123 B = 0.002848 C = 0.002590 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2309.066543 B = 9830.800481 C =10809.062301 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.048 3.952 3 N -0.545 5.545 4 C 0.044 3.956 5 C 0.498 3.502 6 O -0.570 6.570 7 N -0.629 5.629 8 C 0.083 3.917 9 C 0.073 3.927 10 C 0.123 3.877 11 C -0.151 4.151 12 C -0.056 4.056 13 C -0.213 4.213 14 C 0.215 3.785 15 N -0.632 5.632 16 C 0.100 3.900 17 C 0.267 3.733 18 C -0.542 4.542 19 H 0.047 0.953 20 C 0.011 3.989 21 N -0.927 5.927 22 Si 0.961 3.039 23 H -0.265 1.265 24 H -0.276 1.276 25 H -0.277 1.277 26 C -0.218 4.218 27 C -0.056 4.056 28 H 0.034 0.966 29 H 0.066 0.934 30 H 0.072 0.928 31 H 0.061 0.939 32 H 0.072 0.928 33 H 0.091 0.909 34 H 0.124 0.876 35 H 0.053 0.947 36 H 0.100 0.900 37 H 0.046 0.954 38 H 0.075 0.925 39 H 0.097 0.903 40 H 0.073 0.927 41 H 0.058 0.942 42 H 0.061 0.939 43 H 0.150 0.850 44 H 0.139 0.861 45 H 0.039 0.961 46 H 0.087 0.913 47 H 0.061 0.939 48 H 0.012 0.988 49 H 0.006 0.994 50 H 0.267 0.733 51 H 0.088 0.912 52 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.692 -4.393 -30.543 30.975 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.079 4.079 3 N -0.270 5.270 4 C -0.087 4.087 5 C 0.286 3.714 6 O -0.447 6.447 7 N -0.365 5.365 8 C -0.059 4.059 9 C -0.069 4.069 10 C -0.004 4.004 11 C -0.154 4.154 12 C -0.075 4.075 13 C -0.236 4.236 14 C 0.110 3.890 15 N -0.340 5.340 16 C -0.042 4.042 17 C 0.145 3.855 18 C -0.581 4.581 19 H 0.066 0.934 20 C -0.188 4.188 21 N -0.567 5.567 22 Si 0.785 3.215 23 H -0.189 1.189 24 H -0.201 1.201 25 H -0.203 1.203 26 C -0.241 4.241 27 C -0.075 4.075 28 H 0.053 0.947 29 H 0.085 0.915 30 H 0.091 0.909 31 H 0.079 0.921 32 H 0.091 0.909 33 H 0.108 0.892 34 H 0.142 0.858 35 H 0.072 0.928 36 H 0.118 0.882 37 H 0.065 0.935 38 H 0.093 0.907 39 H 0.116 0.884 40 H 0.092 0.908 41 H 0.076 0.924 42 H 0.079 0.921 43 H 0.168 0.832 44 H 0.157 0.843 45 H 0.058 0.942 46 H 0.105 0.895 47 H 0.080 0.920 48 H 0.030 0.970 49 H 0.024 0.976 50 H 0.076 0.924 51 H 0.106 0.894 52 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -2.801 -3.827 -29.253 29.635 hybrid contribution -0.375 0.567 0.765 1.024 sum -3.176 -3.260 -28.487 28.848 Atomic orbital electron populations 1.21780 0.94797 1.02035 1.01635 1.22221 0.96200 0.87458 1.02022 1.61499 1.17323 1.18211 1.29976 1.22055 1.05052 0.89788 0.91776 1.21300 0.75736 0.90568 0.83786 1.90737 1.49599 1.77484 1.26921 1.47994 1.73014 1.07063 1.08381 1.21695 1.02011 0.79505 1.02736 1.22086 1.02702 1.00635 0.81472 1.20720 0.87630 1.00169 0.91888 1.19424 1.07723 0.93469 0.94776 1.20909 0.96185 0.94707 0.95672 1.20800 1.11851 0.98992 0.91921 1.18171 0.92769 0.93060 0.84992 1.46948 1.75653 1.08015 1.03397 1.21605 1.00257 0.80750 1.01636 1.18766 0.95304 0.87261 0.84148 1.21750 0.94990 1.23749 1.17570 0.93447 1.25794 1.01603 0.94903 0.96501 1.70026 1.34133 1.26607 1.25922 0.85569 0.79644 0.78418 0.77841 1.18946 1.20126 1.20304 1.20711 1.11205 0.95202 0.96964 1.20678 0.96251 0.99003 0.91606 0.94711 0.91503 0.90894 0.92103 0.90913 0.89180 0.85836 0.92792 0.88192 0.93458 0.90681 0.88420 0.90791 0.92352 0.92101 0.83246 0.84293 0.94222 0.89466 0.92021 0.96980 0.97598 0.92370 0.89385 0.88206 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.71 9.85 71.98 0.71 -2.00 16 2 C 0.05 0.95 5.50 86.30 0.48 1.42 16 3 N -0.54 -13.40 4.00 -905.35 -3.62 -17.02 16 4 C 0.04 0.77 4.17 85.56 0.36 1.12 16 5 C 0.50 12.01 7.23 87.66 0.63 12.64 16 6 O -0.57 -20.57 15.07 -3.03 -0.05 -20.61 16 7 N -0.63 -10.35 3.27 -871.86 -2.85 -13.21 16 8 C 0.08 1.31 10.41 127.77 1.33 2.64 16 9 C 0.07 0.43 9.73 127.77 1.24 1.68 16 10 C 0.12 3.24 4.76 85.56 0.41 3.65 16 11 C -0.15 -4.98 4.93 -19.84 -0.10 -5.08 16 12 C -0.06 -1.63 7.83 22.25 0.17 -1.45 16 13 C -0.21 -7.25 9.21 22.40 0.21 -7.05 16 14 C 0.21 9.38 6.55 38.21 0.25 9.63 16 15 N -0.63 -29.19 2.99 -726.54 -2.17 -31.36 16 16 C 0.10 3.60 10.23 127.77 1.31 4.90 16 17 C 0.27 14.84 4.95 85.63 0.42 15.27 16 18 C -0.54 -32.23 9.39 25.60 0.24 -31.99 16 19 H 0.05 2.86 7.81 -2.91 -0.02 2.84 16 20 C 0.01 0.66 5.46 84.66 0.46 1.12 16 21 N -0.93 -57.03 13.29 21.45 0.28 -56.75 16 22 Si 0.96 46.58 29.54 68.60 2.03 48.60 16 23 H -0.26 -12.23 7.11 99.48 0.71 -11.52 16 24 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 25 H -0.28 -13.49 7.11 99.48 0.71 -12.78 16 26 C -0.22 -10.31 9.21 22.40 0.21 -10.11 16 27 C -0.06 -2.32 9.69 22.25 0.22 -2.11 16 28 H 0.03 0.87 8.14 -2.38 -0.02 0.85 16 29 H 0.07 0.95 6.65 -2.38 -0.02 0.93 16 30 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 31 H 0.06 0.83 8.07 -2.39 -0.02 0.81 16 32 H 0.07 1.71 5.22 -2.38 -0.01 1.70 16 33 H 0.09 1.04 7.48 -2.39 -0.02 1.02 16 34 H 0.12 1.60 6.18 -2.39 -0.01 1.59 16 35 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 36 H 0.10 0.87 7.92 -2.39 -0.02 0.85 16 37 H 0.05 1.04 7.42 -2.39 -0.02 1.02 16 38 H 0.07 0.27 8.03 -2.38 -0.02 0.25 16 39 H 0.10 0.20 7.79 -2.39 -0.02 0.18 16 40 H 0.07 0.28 7.69 -2.39 -0.02 0.26 16 41 H 0.06 1.77 6.81 -2.39 -0.02 1.76 16 42 H 0.06 1.22 8.06 -2.39 -0.02 1.21 16 43 H 0.15 3.09 7.77 -2.91 -0.02 3.06 16 44 H 0.14 3.94 6.14 -2.91 -0.02 3.92 16 45 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 46 H 0.09 2.48 6.20 -2.38 -0.01 2.46 16 47 H 0.06 2.15 7.89 -2.39 -0.02 2.13 16 48 H 0.01 0.70 7.89 -2.39 -0.02 0.68 16 49 H 0.01 0.37 6.21 -2.38 -0.01 0.35 16 50 H 0.27 15.48 8.31 -92.71 -0.77 14.71 16 51 H 0.09 4.81 6.15 -2.91 -0.02 4.79 16 52 H 0.10 4.32 8.06 -2.90 -0.02 4.30 16 Total: -1.00 -80.56 410.91 3.05 -77.50 By element: Atomic # 1 Polarization: 17.65 SS G_CDS: 0.89 Total: 18.54 kcal Atomic # 6 Polarization: -14.25 SS G_CDS: 8.54 Total: -5.71 kcal Atomic # 7 Polarization: -109.97 SS G_CDS: -8.36 Total: -118.33 kcal Atomic # 8 Polarization: -20.57 SS G_CDS: -0.05 Total: -20.61 kcal Atomic # 14 Polarization: 46.58 SS G_CDS: 2.03 Total: 48.60 kcal Total: -80.56 3.05 -77.50 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000768309061.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.539 kcal (2) G-P(sol) polarization free energy of solvation -80.559 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.019 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.055 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.504 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.965 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds