Wall clock time and date at job start Tue Mar 31 2020 18:25:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46500 * 109.47180 * 2 1 4 4 C 1.46494 * 120.00295 * 269.99921 * 3 2 1 5 5 C 1.50704 * 109.47350 * 270.00132 * 4 3 2 6 6 H 1.08003 * 119.99783 * 359.97438 * 5 4 3 7 7 C 1.37877 * 120.00096 * 179.97438 * 5 4 3 8 8 N 1.31515 * 120.00206 * 0.02562 * 7 5 4 9 9 Si 1.86799 * 119.99816 * 179.97438 * 7 5 4 10 10 H 1.48499 * 109.46903 * 90.00380 * 9 7 5 11 11 H 1.48501 * 109.46987 * 210.00255 * 9 7 5 12 12 H 1.48498 * 109.47213 * 330.00172 * 9 7 5 13 13 C 1.34781 * 120.00318 * 89.99731 * 3 2 1 14 14 O 1.21277 * 120.00537 * 180.02562 * 13 3 2 15 15 C 1.50704 * 119.99530 * 0.02562 * 13 3 2 16 16 N 1.46903 * 109.46994 * 179.97438 * 15 13 3 17 17 C 1.46895 * 111.00003 * 179.97438 * 16 15 13 18 18 H 1.09000 * 109.47556 * 324.99726 * 17 16 15 19 19 C 1.53001 * 109.47048 * 85.00308 * 17 16 15 20 20 C 1.50702 * 109.47222 * 204.99783 * 17 16 15 21 21 C 1.38283 * 119.92760 * 140.00193 * 20 17 16 22 22 C 1.38103 * 120.07548 * 179.97438 * 21 20 17 23 23 C 1.38900 * 119.92730 * 359.97438 * 22 21 20 24 24 N 1.39675 * 120.07831 * 179.97438 * 23 22 21 25 25 C 1.46506 * 119.99827 * 0.02562 * 24 23 22 26 26 C 1.46499 * 120.00179 * 179.72381 * 24 23 22 27 27 C 1.38912 * 119.85059 * 0.25347 * 23 22 21 28 28 C 1.38103 * 119.92446 * 359.49447 * 27 23 22 29 29 H 1.08998 * 109.47158 * 59.99731 * 1 2 3 30 30 H 1.09003 * 109.47063 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.46722 * 299.99897 * 1 2 3 32 32 H 1.08996 * 109.47347 * 240.00045 * 2 1 3 33 33 H 1.09007 * 109.47474 * 119.99760 * 2 1 3 34 34 H 1.09012 * 109.47125 * 29.99693 * 4 3 2 35 35 H 1.08996 * 109.47644 * 149.99708 * 4 3 2 36 36 H 0.96993 * 120.00138 * 179.97438 * 8 7 5 37 37 H 1.08992 * 109.47467 * 59.99805 * 15 13 3 38 38 H 1.08998 * 109.46773 * 299.99179 * 15 13 3 39 39 H 1.00897 * 110.99848 * 303.95241 * 16 15 13 40 40 H 1.09003 * 109.46907 * 299.99562 * 19 17 16 41 41 H 1.08994 * 109.47357 * 59.99770 * 19 17 16 42 42 H 1.08998 * 109.46980 * 180.02562 * 19 17 16 43 43 H 1.08006 * 119.96242 * 359.95496 * 21 20 17 44 44 H 1.08009 * 120.03411 * 179.97438 * 22 21 20 45 45 H 1.08999 * 109.46892 * 269.72690 * 25 24 23 46 46 H 1.09000 * 109.46803 * 29.71863 * 25 24 23 47 47 H 1.09000 * 109.47214 * 149.72656 * 25 24 23 48 48 H 1.09003 * 109.47269 * 270.27058 * 26 24 23 49 49 H 1.08994 * 109.47173 * 30.27876 * 26 24 23 50 50 H 1.09005 * 109.47077 * 150.28047 * 26 24 23 51 51 H 1.08002 * 120.04229 * 179.72686 * 27 23 22 52 52 H 1.07995 * 119.96623 * 180.24596 * 28 27 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2626 2.0718 -1.2686 5 6 3.6859 1.8351 -1.7037 6 1 4.3429 1.2309 -1.0957 7 6 4.1492 2.3897 -2.8779 8 7 3.3492 3.1258 -3.6180 9 14 5.9136 2.0967 -3.4167 10 1 5.9776 0.8754 -4.2591 11 1 6.3922 3.2640 -4.2001 12 1 6.7736 1.9179 -2.2194 13 6 2.2430 2.0167 1.1672 14 8 2.6468 3.1602 1.1672 15 6 1.9923 1.3060 2.4723 16 7 2.3109 2.2059 3.5889 17 6 2.0774 1.5457 4.8802 18 1 1.2170 0.8815 4.7984 19 6 3.3141 0.7329 5.2684 20 6 1.8093 2.5873 5.9357 21 6 0.8358 2.3654 6.8925 22 6 0.5880 3.3176 7.8615 23 6 1.3181 4.4992 7.8748 24 7 1.0697 5.4647 8.8531 25 6 0.0383 5.2314 9.8672 26 6 1.8449 6.7076 8.8691 27 6 2.2920 4.7211 6.9094 28 6 2.5384 3.7624 5.9463 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8934 -0.5138 -0.8899 33 1 1.8934 -0.5138 0.8900 34 1 1.5817 1.6877 -2.0284 35 1 2.0956 3.1410 -1.1384 36 1 3.6753 3.5163 -4.4438 37 1 2.6227 0.4188 2.5299 38 1 0.9444 1.0116 2.5302 39 1 3.2592 2.5440 3.5215 40 1 3.5081 -0.0206 4.5050 41 1 4.1745 1.3971 5.3503 42 1 3.1407 0.2427 6.2264 43 1 0.2685 1.4464 6.8817 44 1 -0.1728 3.1438 8.6083 45 1 -0.9165 5.6169 9.5096 46 1 -0.0497 4.1616 10.0564 47 1 0.3139 5.7422 10.7898 48 1 2.7358 6.5723 9.4823 49 1 2.1395 6.9652 7.8519 50 1 1.2360 7.5103 9.2853 51 1 2.8584 5.6406 6.9141 52 1 3.2981 3.9325 5.1978 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000775828960.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:25:27 Heat of formation + Delta-G solvation = 4.820882 kcal Electronic energy + Delta-G solvation = -28464.628311 eV Core-core repulsion = 24657.361294 eV Total energy + Delta-G solvation = -3807.267017 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -39.87839 -39.04158 -37.36712 -35.50338 -35.03448 -32.78618 -31.31586 -31.13776 -30.02401 -28.86335 -28.38622 -27.50641 -25.63039 -24.87301 -22.96990 -22.57996 -22.40406 -21.62152 -20.06716 -18.42065 -17.54171 -16.56461 -16.30757 -16.14374 -15.61951 -15.30649 -15.25142 -15.07182 -14.57720 -14.42439 -14.16104 -13.73804 -13.63418 -13.43987 -13.29697 -13.13030 -13.00744 -12.90798 -12.55434 -12.39884 -12.26744 -12.24476 -12.18737 -11.94475 -11.80067 -11.51195 -11.38031 -11.13574 -10.96181 -10.86301 -10.70744 -10.69888 -10.48806 -10.09423 -9.76499 -9.59102 -8.86395 -8.83127 -8.40279 -8.19248 -7.58449 -7.30826 -6.00741 -4.05302 1.50033 1.61234 2.94737 3.31496 3.38150 3.41835 3.53840 3.77068 3.95048 4.43611 4.52482 4.70946 4.73635 4.86745 4.93825 5.00429 5.07404 5.13193 5.20700 5.25428 5.30042 5.33228 5.35000 5.37441 5.40395 5.48808 5.50807 5.56170 5.59833 5.69519 5.71630 5.77226 5.79912 5.89220 6.04774 6.07419 6.08707 6.25761 6.27706 6.45876 6.53157 6.72826 6.86330 7.04210 7.09580 7.22780 7.39779 7.50445 7.53862 7.62501 7.96429 8.28225 8.51311 8.95074 9.19879 9.59701 11.07249 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.015968 B = 0.002250 C = 0.002122 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1753.111083 B =12439.947415 C =13193.671844 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.107 3.893 3 N -0.600 5.600 4 C 0.247 3.753 5 C -0.524 4.524 6 H 0.056 0.944 7 C 0.060 3.940 8 N -0.895 5.895 9 Si 0.897 3.103 10 H -0.281 1.281 11 H -0.285 1.285 12 H -0.275 1.275 13 C 0.504 3.496 14 O -0.529 6.529 15 C 0.042 3.958 16 N -0.664 5.664 17 C 0.130 3.870 18 H 0.082 0.918 19 C -0.179 4.179 20 C -0.119 4.119 21 C -0.069 4.069 22 C -0.199 4.199 23 C 0.206 3.794 24 N -0.642 5.642 25 C 0.096 3.904 26 C 0.094 3.906 27 C -0.196 4.196 28 C -0.046 4.046 29 H 0.060 0.940 30 H 0.058 0.942 31 H 0.051 0.949 32 H 0.081 0.919 33 H 0.062 0.938 34 H 0.031 0.969 35 H 0.043 0.957 36 H 0.263 0.737 37 H 0.052 0.948 38 H 0.093 0.907 39 H 0.351 0.649 40 H 0.056 0.944 41 H 0.059 0.941 42 H 0.061 0.939 43 H 0.117 0.883 44 H 0.118 0.882 45 H 0.045 0.955 46 H 0.067 0.933 47 H 0.062 0.938 48 H 0.045 0.955 49 H 0.070 0.930 50 H 0.063 0.937 51 H 0.119 0.881 52 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.558 -2.996 25.872 26.857 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.017 4.017 3 N -0.333 5.333 4 C 0.128 3.872 5 C -0.563 4.563 6 H 0.074 0.926 7 C -0.142 4.142 8 N -0.534 5.534 9 Si 0.725 3.275 10 H -0.207 1.207 11 H -0.211 1.211 12 H -0.200 1.200 13 C 0.290 3.710 14 O -0.405 6.405 15 C -0.091 4.091 16 N -0.297 5.297 17 C 0.020 3.980 18 H 0.100 0.900 19 C -0.238 4.238 20 C -0.121 4.121 21 C -0.088 4.088 22 C -0.222 4.222 23 C 0.106 3.894 24 N -0.356 5.356 25 C -0.048 4.048 26 C -0.049 4.049 27 C -0.218 4.218 28 C -0.065 4.065 29 H 0.080 0.920 30 H 0.077 0.923 31 H 0.070 0.930 32 H 0.099 0.901 33 H 0.081 0.919 34 H 0.049 0.951 35 H 0.061 0.939 36 H 0.072 0.928 37 H 0.070 0.930 38 H 0.111 0.889 39 H 0.171 0.829 40 H 0.075 0.925 41 H 0.078 0.922 42 H 0.080 0.920 43 H 0.135 0.865 44 H 0.136 0.864 45 H 0.064 0.936 46 H 0.086 0.914 47 H 0.081 0.919 48 H 0.064 0.936 49 H 0.088 0.912 50 H 0.082 0.918 51 H 0.137 0.863 52 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -6.991 -1.811 25.787 26.779 hybrid contribution 1.627 -0.775 -0.391 1.844 sum -5.365 -2.586 25.396 26.085 Atomic orbital electron populations 1.22227 0.96853 1.01290 1.02408 1.21392 0.93488 0.84355 1.02478 1.48246 1.64158 1.13170 1.07719 1.19239 0.96101 0.93690 0.78177 1.21436 0.96979 1.31742 1.06129 0.92589 1.24942 0.97793 0.94993 0.96473 1.69932 1.35659 1.33468 1.14317 0.86510 0.84789 0.77631 0.78547 1.20703 1.21109 1.19962 1.20202 0.78830 0.87075 0.84885 1.90669 1.45122 1.17722 1.86948 1.21926 1.02110 0.94462 0.90565 1.60243 1.32623 1.37197 0.99592 1.20341 0.97503 0.92440 0.87718 0.90019 1.22518 0.98808 1.00582 1.01867 1.19474 0.98712 0.96601 0.97353 1.20676 0.96280 0.98118 0.93751 1.20539 1.04194 0.94597 1.02821 1.17808 0.94103 0.88726 0.88781 1.46256 1.40522 1.18044 1.30737 1.21580 0.90601 1.01904 0.90679 1.21600 0.95345 0.85510 1.02427 1.20671 1.02014 1.01230 0.97915 1.20715 0.97842 0.92164 0.95757 0.92044 0.92287 0.92997 0.90070 0.91942 0.95131 0.93906 0.92763 0.93019 0.88867 0.82900 0.92514 0.92189 0.91991 0.86485 0.86429 0.93604 0.91407 0.91880 0.93646 0.91153 0.91811 0.86277 0.85979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.30 10.24 37.16 0.38 -1.92 16 2 C 0.11 1.72 5.93 -4.04 -0.02 1.70 16 3 N -0.60 -12.77 2.46 -175.05 -0.43 -13.20 16 4 C 0.25 6.55 5.16 -5.19 -0.03 6.52 16 5 C -0.52 -14.98 9.39 -34.44 -0.32 -15.30 16 6 H 0.06 1.59 7.81 -52.48 -0.41 1.18 16 7 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 8 N -0.89 -26.90 13.29 55.43 0.74 -26.17 16 9 Si 0.90 22.06 29.54 -169.99 -5.02 17.04 16 10 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 11 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 12 H -0.27 -6.73 7.11 56.52 0.40 -6.33 16 13 C 0.50 10.63 7.71 -10.98 -0.08 10.54 16 14 O -0.53 -13.57 15.78 5.56 0.09 -13.49 16 15 C 0.04 0.64 4.52 -4.97 -0.02 0.61 16 16 N -0.66 -9.85 5.33 -109.22 -0.58 -10.43 16 17 C 0.13 1.51 2.79 -68.87 -0.19 1.32 16 18 H 0.08 0.88 7.66 -51.93 -0.40 0.48 16 19 C -0.18 -1.81 9.14 37.16 0.34 -1.47 16 20 C -0.12 -1.44 4.96 -104.59 -0.52 -1.96 16 21 C -0.07 -0.76 9.66 -39.61 -0.38 -1.14 16 22 C -0.20 -2.13 9.21 -39.39 -0.36 -2.49 16 23 C 0.21 2.33 6.55 -83.79 -0.55 1.78 16 24 N -0.64 -5.93 3.41 -187.55 -0.64 -6.57 16 25 C 0.10 0.64 10.20 59.85 0.61 1.25 16 26 C 0.09 0.69 10.19 59.85 0.61 1.30 16 27 C -0.20 -2.34 9.21 -39.38 -0.36 -2.71 16 28 C -0.05 -0.58 9.31 -39.61 -0.37 -0.95 16 29 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 30 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 31 H 0.05 0.68 7.22 -51.93 -0.38 0.30 16 32 H 0.08 1.36 8.07 -51.93 -0.42 0.94 16 33 H 0.06 0.83 6.44 -51.93 -0.33 0.49 16 34 H 0.03 0.82 8.07 -51.92 -0.42 0.40 16 35 H 0.04 1.29 7.42 -51.93 -0.39 0.91 16 36 H 0.26 7.45 8.31 -40.82 -0.34 7.12 16 37 H 0.05 0.70 6.69 -51.93 -0.35 0.35 16 38 H 0.09 1.27 7.10 -51.93 -0.37 0.90 16 39 H 0.35 5.49 7.51 -39.29 -0.30 5.19 16 40 H 0.06 0.56 7.45 -51.93 -0.39 0.18 16 41 H 0.06 0.63 8.13 -51.93 -0.42 0.21 16 42 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 43 H 0.12 1.04 8.03 -52.48 -0.42 0.62 16 44 H 0.12 1.03 6.14 -52.48 -0.32 0.71 16 45 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 46 H 0.07 0.42 6.18 -51.93 -0.32 0.10 16 47 H 0.06 0.31 8.07 -51.93 -0.42 -0.10 16 48 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 49 H 0.07 0.53 6.19 -51.93 -0.32 0.21 16 50 H 0.06 0.36 8.07 -51.93 -0.42 -0.06 16 51 H 0.12 1.26 6.14 -52.49 -0.32 0.94 16 52 H 0.12 1.58 7.24 -52.49 -0.38 1.20 16 LS Contribution 415.41 15.07 6.26 6.26 Total: -1.00 -34.49 415.41 -9.70 -44.19 By element: Atomic # 1 Polarization: 12.42 SS G_CDS: -8.74 Total: 3.68 kcal Atomic # 6 Polarization: 0.07 SS G_CDS: -1.37 Total: -1.31 kcal Atomic # 7 Polarization: -55.46 SS G_CDS: -0.91 Total: -56.38 kcal Atomic # 8 Polarization: -13.57 SS G_CDS: 0.09 Total: -13.49 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.04 kcal Total LS contribution 6.26 Total: 6.26 kcal Total: -34.49 -9.70 -44.19 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000775828960.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.012 kcal (2) G-P(sol) polarization free energy of solvation -34.492 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.520 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.699 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.191 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.821 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds