Wall clock time and date at job start Tue Mar 31 2020 18:25:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46500 * 109.47180 * 2 1 4 4 C 1.46494 * 120.00295 * 269.99921 * 3 2 1 5 5 C 1.50704 * 109.47350 * 270.00132 * 4 3 2 6 6 H 1.08003 * 119.99783 * 359.97438 * 5 4 3 7 7 C 1.37877 * 120.00096 * 179.97438 * 5 4 3 8 8 N 1.31515 * 120.00206 * 0.02562 * 7 5 4 9 9 Si 1.86799 * 119.99816 * 179.97438 * 7 5 4 10 10 H 1.48499 * 109.46903 * 90.00380 * 9 7 5 11 11 H 1.48501 * 109.46987 * 210.00255 * 9 7 5 12 12 H 1.48498 * 109.47213 * 330.00172 * 9 7 5 13 13 C 1.34781 * 120.00318 * 89.99731 * 3 2 1 14 14 O 1.21277 * 120.00537 * 180.02562 * 13 3 2 15 15 C 1.50704 * 119.99530 * 0.02562 * 13 3 2 16 16 N 1.46903 * 109.46994 * 179.97438 * 15 13 3 17 17 C 1.46895 * 111.00003 * 179.97438 * 16 15 13 18 18 H 1.09000 * 109.47556 * 324.99726 * 17 16 15 19 19 C 1.53001 * 109.47048 * 85.00308 * 17 16 15 20 20 C 1.50702 * 109.47222 * 204.99783 * 17 16 15 21 21 C 1.38283 * 119.92760 * 140.00193 * 20 17 16 22 22 C 1.38103 * 120.07548 * 179.97438 * 21 20 17 23 23 C 1.38900 * 119.92730 * 359.97438 * 22 21 20 24 24 N 1.39675 * 120.07831 * 179.97438 * 23 22 21 25 25 C 1.46506 * 119.99827 * 0.02562 * 24 23 22 26 26 C 1.46499 * 120.00179 * 179.72381 * 24 23 22 27 27 C 1.38912 * 119.85059 * 0.25347 * 23 22 21 28 28 C 1.38103 * 119.92446 * 359.49447 * 27 23 22 29 29 H 1.08998 * 109.47158 * 59.99731 * 1 2 3 30 30 H 1.09003 * 109.47063 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.46722 * 299.99897 * 1 2 3 32 32 H 1.08996 * 109.47347 * 240.00045 * 2 1 3 33 33 H 1.09007 * 109.47474 * 119.99760 * 2 1 3 34 34 H 1.09012 * 109.47125 * 29.99693 * 4 3 2 35 35 H 1.08996 * 109.47644 * 149.99708 * 4 3 2 36 36 H 0.96993 * 120.00138 * 179.97438 * 8 7 5 37 37 H 1.08992 * 109.47467 * 59.99805 * 15 13 3 38 38 H 1.08998 * 109.46773 * 299.99179 * 15 13 3 39 39 H 1.00897 * 110.99848 * 303.95241 * 16 15 13 40 40 H 1.09003 * 109.46907 * 299.99562 * 19 17 16 41 41 H 1.08994 * 109.47357 * 59.99770 * 19 17 16 42 42 H 1.08998 * 109.46980 * 180.02562 * 19 17 16 43 43 H 1.08006 * 119.96242 * 359.95496 * 21 20 17 44 44 H 1.08009 * 120.03411 * 179.97438 * 22 21 20 45 45 H 1.08999 * 109.46892 * 269.72690 * 25 24 23 46 46 H 1.09000 * 109.46803 * 29.71863 * 25 24 23 47 47 H 1.09000 * 109.47214 * 149.72656 * 25 24 23 48 48 H 1.09003 * 109.47269 * 270.27058 * 26 24 23 49 49 H 1.08994 * 109.47173 * 30.27876 * 26 24 23 50 50 H 1.09005 * 109.47077 * 150.28047 * 26 24 23 51 51 H 1.08002 * 120.04229 * 179.72686 * 27 23 22 52 52 H 1.07995 * 119.96623 * 180.24596 * 28 27 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2626 2.0718 -1.2686 5 6 3.6859 1.8351 -1.7037 6 1 4.3429 1.2309 -1.0957 7 6 4.1492 2.3897 -2.8779 8 7 3.3492 3.1258 -3.6180 9 14 5.9136 2.0967 -3.4167 10 1 5.9776 0.8754 -4.2591 11 1 6.3922 3.2640 -4.2001 12 1 6.7736 1.9179 -2.2194 13 6 2.2430 2.0167 1.1672 14 8 2.6468 3.1602 1.1672 15 6 1.9923 1.3060 2.4723 16 7 2.3109 2.2059 3.5889 17 6 2.0774 1.5457 4.8802 18 1 1.2170 0.8815 4.7984 19 6 3.3141 0.7329 5.2684 20 6 1.8093 2.5873 5.9357 21 6 0.8358 2.3654 6.8925 22 6 0.5880 3.3176 7.8615 23 6 1.3181 4.4992 7.8748 24 7 1.0697 5.4647 8.8531 25 6 0.0383 5.2314 9.8672 26 6 1.8449 6.7076 8.8691 27 6 2.2920 4.7211 6.9094 28 6 2.5384 3.7624 5.9463 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8934 -0.5138 -0.8899 33 1 1.8934 -0.5138 0.8900 34 1 1.5817 1.6877 -2.0284 35 1 2.0956 3.1410 -1.1384 36 1 3.6753 3.5163 -4.4438 37 1 2.6227 0.4188 2.5299 38 1 0.9444 1.0116 2.5302 39 1 3.2592 2.5440 3.5215 40 1 3.5081 -0.0206 4.5050 41 1 4.1745 1.3971 5.3503 42 1 3.1407 0.2427 6.2264 43 1 0.2685 1.4464 6.8817 44 1 -0.1728 3.1438 8.6083 45 1 -0.9165 5.6169 9.5096 46 1 -0.0497 4.1616 10.0564 47 1 0.3139 5.7422 10.7898 48 1 2.7358 6.5723 9.4823 49 1 2.1395 6.9652 7.8519 50 1 1.2360 7.5103 9.2853 51 1 2.8584 5.6406 6.9141 52 1 3.2981 3.9325 5.1978 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000775828960.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:25:26 Heat of formation + Delta-G solvation = -16.807545 kcal Electronic energy + Delta-G solvation = -28465.566190 eV Core-core repulsion = 24657.361294 eV Total energy + Delta-G solvation = -3808.204896 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -40.87123 -40.46898 -38.28214 -36.92177 -36.21333 -34.89216 -32.38198 -31.98463 -31.51990 -29.79523 -29.18141 -28.96337 -27.02142 -25.75831 -24.64204 -23.86253 -23.41209 -22.56167 -20.92617 -19.95121 -18.63727 -18.39286 -17.81164 -17.37299 -16.79326 -16.63503 -16.34104 -15.96335 -15.90505 -15.36014 -15.35300 -15.05782 -14.63827 -14.47337 -14.42351 -14.34563 -14.19611 -13.90311 -13.57317 -13.51141 -13.39457 -13.24417 -13.15696 -13.02339 -12.86824 -12.84173 -12.79436 -12.65278 -12.45615 -12.34412 -12.13705 -11.85743 -11.79776 -11.70534 -11.52636 -10.63825 -10.55839 -10.49401 -9.72446 -9.39825 -9.28102 -8.21397 -8.06331 -6.36436 0.64230 0.75213 1.35629 1.39056 1.49211 1.90817 2.28078 2.31234 2.43585 2.99803 3.07555 3.36945 3.77515 3.94402 4.02827 4.11354 4.13303 4.27736 4.28706 4.34765 4.42475 4.43951 4.48375 4.51234 4.53085 4.63961 4.69195 4.70087 4.81012 4.84869 4.89695 4.93669 4.96343 4.98074 5.00071 5.01925 5.07558 5.24036 5.24911 5.28302 5.41831 5.45005 5.59546 5.59787 5.81207 5.90108 6.04697 6.08076 6.17238 6.36982 6.42027 6.62797 6.72220 6.87086 7.29885 7.56304 8.85582 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.015968 B = 0.002250 C = 0.002122 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1753.111083 B =12439.947415 C =13193.671844 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.100 3.900 3 N -0.605 5.605 4 C 0.263 3.737 5 C -0.539 4.539 6 H 0.054 0.946 7 C 0.004 3.996 8 N -0.930 5.930 9 Si 0.969 3.031 10 H -0.262 1.262 11 H -0.282 1.282 12 H -0.273 1.273 13 C 0.493 3.507 14 O -0.588 6.588 15 C 0.060 3.940 16 N -0.683 5.683 17 C 0.135 3.865 18 H 0.100 0.900 19 C -0.172 4.172 20 C -0.134 4.134 21 C -0.069 4.069 22 C -0.204 4.204 23 C 0.198 3.802 24 N -0.648 5.648 25 C 0.091 3.909 26 C 0.090 3.910 27 C -0.214 4.214 28 C -0.065 4.065 29 H 0.035 0.965 30 H 0.096 0.904 31 H 0.059 0.941 32 H 0.071 0.929 33 H 0.102 0.898 34 H 0.020 0.980 35 H -0.008 1.008 36 H 0.267 0.733 37 H 0.080 0.920 38 H 0.119 0.881 39 H 0.341 0.659 40 H 0.062 0.938 41 H 0.048 0.952 42 H 0.076 0.924 43 H 0.142 0.858 44 H 0.139 0.861 45 H 0.049 0.951 46 H 0.073 0.927 47 H 0.081 0.919 48 H 0.051 0.949 49 H 0.060 0.940 50 H 0.082 0.918 51 H 0.121 0.879 52 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.041 -5.447 28.053 29.432 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.022 4.022 3 N -0.337 5.337 4 C 0.141 3.859 5 C -0.578 4.578 6 H 0.072 0.928 7 C -0.195 4.195 8 N -0.570 5.570 9 Si 0.793 3.207 10 H -0.187 1.187 11 H -0.207 1.207 12 H -0.197 1.197 13 C 0.282 3.718 14 O -0.468 6.468 15 C -0.072 4.072 16 N -0.315 5.315 17 C 0.026 3.974 18 H 0.118 0.882 19 C -0.231 4.231 20 C -0.136 4.136 21 C -0.088 4.088 22 C -0.227 4.227 23 C 0.096 3.904 24 N -0.361 5.361 25 C -0.052 4.052 26 C -0.053 4.053 27 C -0.236 4.236 28 C -0.084 4.084 29 H 0.054 0.946 30 H 0.115 0.885 31 H 0.078 0.922 32 H 0.089 0.911 33 H 0.120 0.880 34 H 0.038 0.962 35 H 0.011 0.989 36 H 0.075 0.925 37 H 0.098 0.902 38 H 0.137 0.863 39 H 0.160 0.840 40 H 0.081 0.919 41 H 0.067 0.933 42 H 0.095 0.905 43 H 0.160 0.840 44 H 0.156 0.844 45 H 0.067 0.933 46 H 0.092 0.908 47 H 0.100 0.900 48 H 0.070 0.930 49 H 0.079 0.921 50 H 0.100 0.900 51 H 0.139 0.861 52 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -7.512 -4.308 28.007 29.315 hybrid contribution 1.712 0.054 -1.002 1.985 sum -5.800 -4.254 27.004 27.945 Atomic orbital electron populations 1.22158 0.94706 1.03471 1.01591 1.21746 0.95230 0.81324 1.03919 1.48284 1.64194 1.15117 1.06142 1.18660 0.95249 0.91380 0.80568 1.21703 0.97838 1.31849 1.06399 0.92822 1.25901 1.02495 0.94531 0.96524 1.70062 1.37832 1.34267 1.14795 0.85394 0.78901 0.78175 0.78195 1.18718 1.20738 1.19739 1.21334 0.77283 0.86652 0.86560 1.90635 1.47701 1.20551 1.87934 1.21833 1.04087 0.94232 0.87034 1.60236 1.32199 1.38161 1.00876 1.20397 0.98731 0.92426 0.85851 0.88227 1.22447 0.97656 1.00219 1.02799 1.19607 0.99311 0.96552 0.98168 1.20961 0.95725 0.99031 0.93092 1.20839 1.04393 0.94213 1.03223 1.18003 0.93830 0.89565 0.88990 1.46532 1.40940 1.17994 1.30607 1.21752 0.90060 1.02651 0.90723 1.21708 0.95912 0.85480 1.02194 1.20782 1.02935 1.01418 0.98508 1.20739 0.98308 0.93274 0.96043 0.94551 0.88509 0.92159 0.91069 0.88019 0.96212 0.98940 0.92463 0.90212 0.86272 0.83969 0.91939 0.93317 0.90478 0.84023 0.84362 0.93291 0.90820 0.90042 0.93021 0.92084 0.89953 0.86080 0.87472 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.02 10.24 71.98 0.74 -3.28 16 2 C 0.10 3.04 5.93 86.38 0.51 3.55 16 3 N -0.61 -26.13 2.46 -826.14 -2.03 -28.16 16 4 C 0.26 14.63 5.16 85.64 0.44 15.08 16 5 C -0.54 -31.71 9.39 25.60 0.24 -31.47 16 6 H 0.05 3.10 7.81 -2.91 -0.02 3.08 16 7 C 0.00 0.24 5.46 84.65 0.46 0.71 16 8 N -0.93 -57.57 13.29 21.45 0.28 -57.28 16 9 Si 0.97 45.70 29.54 68.60 2.03 47.73 16 10 H -0.26 -11.54 7.11 99.48 0.71 -10.83 16 11 H -0.28 -13.06 7.11 99.48 0.71 -12.35 16 12 H -0.27 -12.67 7.11 99.48 0.71 -11.96 16 13 C 0.49 21.05 7.71 87.66 0.68 21.73 16 14 O -0.59 -31.76 15.78 -3.02 -0.05 -31.81 16 15 C 0.06 1.71 4.52 85.56 0.39 2.09 16 16 N -0.68 -19.83 5.33 -499.47 -2.66 -22.49 16 17 C 0.13 2.88 2.79 44.17 0.12 3.01 16 18 H 0.10 1.77 7.66 -2.39 -0.02 1.75 16 19 C -0.17 -3.14 9.14 71.98 0.66 -2.49 16 20 C -0.13 -3.12 4.96 -19.84 -0.10 -3.22 16 21 C -0.07 -1.37 9.66 22.25 0.21 -1.15 16 22 C -0.20 -4.00 9.21 22.40 0.21 -3.79 16 23 C 0.20 4.32 6.55 38.21 0.25 4.57 16 24 N -0.65 -11.15 3.41 -747.28 -2.55 -13.69 16 25 C 0.09 1.01 10.20 127.77 1.30 2.31 16 26 C 0.09 1.23 10.19 127.77 1.30 2.53 16 27 C -0.21 -5.25 9.21 22.40 0.21 -5.05 16 28 C -0.06 -1.70 9.31 22.25 0.21 -1.49 16 29 H 0.04 1.08 8.14 -2.39 -0.02 1.06 16 30 H 0.10 1.71 8.14 -2.39 -0.02 1.69 16 31 H 0.06 1.41 7.22 -2.39 -0.02 1.39 16 32 H 0.07 2.31 8.07 -2.39 -0.02 2.29 16 33 H 0.10 2.30 6.44 -2.38 -0.02 2.29 16 34 H 0.02 1.12 8.07 -2.38 -0.02 1.10 16 35 H -0.01 -0.49 7.42 -2.39 -0.02 -0.51 16 36 H 0.27 15.45 8.31 -92.71 -0.77 14.68 16 37 H 0.08 1.86 6.69 -2.39 -0.02 1.84 16 38 H 0.12 2.80 7.10 -2.39 -0.02 2.79 16 39 H 0.34 10.97 7.51 -89.70 -0.67 10.29 16 40 H 0.06 1.06 7.45 -2.39 -0.02 1.04 16 41 H 0.05 0.99 8.13 -2.39 -0.02 0.97 16 42 H 0.08 1.17 8.14 -2.39 -0.02 1.16 16 43 H 0.14 2.01 8.03 -2.91 -0.02 1.99 16 44 H 0.14 2.04 6.14 -2.91 -0.02 2.02 16 45 H 0.05 0.52 8.14 -2.39 -0.02 0.50 16 46 H 0.07 0.73 6.18 -2.39 -0.01 0.71 16 47 H 0.08 0.61 8.07 -2.39 -0.02 0.59 16 48 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 49 H 0.06 0.94 6.19 -2.39 -0.01 0.93 16 50 H 0.08 0.80 8.07 -2.38 -0.02 0.78 16 51 H 0.12 2.74 6.14 -2.91 -0.02 2.72 16 52 H 0.11 3.02 7.24 -2.91 -0.02 3.00 16 Total: -1.00 -79.52 415.41 3.09 -76.44 By element: Atomic # 1 Polarization: 25.41 SS G_CDS: 0.23 Total: 25.64 kcal Atomic # 6 Polarization: -4.20 SS G_CDS: 7.83 Total: 3.63 kcal Atomic # 7 Polarization: -114.67 SS G_CDS: -6.95 Total: -121.62 kcal Atomic # 8 Polarization: -31.76 SS G_CDS: -0.05 Total: -31.81 kcal Atomic # 14 Polarization: 45.70 SS G_CDS: 2.03 Total: 47.73 kcal Total: -79.52 3.09 -76.44 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000775828960.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.630 kcal (2) G-P(sol) polarization free energy of solvation -79.524 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.894 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.087 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.438 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.808 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds