Wall clock time and date at job start Tue Mar 31 2020 18:12:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46504 * 109.47134 * 2 1 4 4 C 1.46494 * 119.99969 * 83.56681 * 3 2 1 5 5 C 1.50697 * 109.47176 * 89.99726 * 4 3 2 6 6 C 1.38286 * 119.92436 * 90.00377 * 5 4 3 7 7 C 1.38109 * 120.07666 * 180.02562 * 6 5 4 8 8 C 1.38909 * 119.92067 * 359.97438 * 7 6 5 9 9 N 1.39674 * 120.07177 * 179.97438 * 8 7 6 10 10 C 1.46504 * 119.99818 * 353.93255 * 9 8 7 11 11 C 1.46504 * 120.00265 * 173.92969 * 9 8 7 12 12 C 1.38913 * 119.85513 * 0.25459 * 8 7 6 13 13 C 1.38104 * 119.92068 * 359.51603 * 12 8 7 14 14 C 1.34773 * 119.99875 * 263.56743 * 3 2 1 15 15 O 1.21285 * 119.99992 * 174.63976 * 14 3 2 16 16 C 1.50701 * 120.00520 * 354.63427 * 14 3 2 17 17 H 1.09004 * 109.46917 * 332.13288 * 16 14 3 18 18 N 1.46892 * 109.47661 * 212.12422 * 16 14 3 19 19 C 1.53003 * 109.46970 * 92.12084 * 16 14 3 20 20 C 1.53001 * 109.47424 * 185.35040 * 19 16 14 21 21 C 1.50693 * 109.47256 * 180.02562 * 20 19 16 22 22 H 1.08004 * 119.99959 * 359.97438 * 21 20 19 23 23 C 1.37875 * 120.00165 * 180.02562 * 21 20 19 24 24 N 1.31519 * 120.00293 * 179.97438 * 23 21 20 25 25 Si 1.86799 * 119.99773 * 359.97438 * 23 21 20 26 26 H 1.48505 * 109.46966 * 90.00712 * 25 23 21 27 27 H 1.48508 * 109.47183 * 210.00351 * 25 23 21 28 28 H 1.48492 * 109.47444 * 330.00614 * 25 23 21 29 29 H 1.09000 * 109.47198 * 185.44260 * 1 2 3 30 30 H 1.09009 * 109.46984 * 305.44391 * 1 2 3 31 31 H 1.09003 * 109.47314 * 65.43580 * 1 2 3 32 32 H 1.08999 * 109.46711 * 240.00558 * 2 1 3 33 33 H 1.08995 * 109.47115 * 120.00190 * 2 1 3 34 34 H 1.09004 * 109.47198 * 329.99782 * 4 3 2 35 35 H 1.09002 * 109.47040 * 209.99719 * 4 3 2 36 36 H 1.08001 * 119.96586 * 359.97438 * 6 5 4 37 37 H 1.07997 * 120.03995 * 179.97438 * 7 6 5 38 38 H 1.08996 * 109.47311 * 90.00526 * 10 9 8 39 39 H 1.09007 * 109.46770 * 209.99862 * 10 9 8 40 40 H 1.08990 * 109.47417 * 329.99627 * 10 9 8 41 41 H 1.08997 * 109.46665 * 5.05162 * 11 9 8 42 42 H 1.09001 * 109.47068 * 125.04440 * 11 9 8 43 43 H 1.08996 * 109.47170 * 245.04749 * 11 9 8 44 44 H 1.07997 * 120.04068 * 179.75232 * 12 8 7 45 45 H 1.08005 * 119.96244 * 180.23406 * 13 12 8 46 46 H 1.00907 * 111.00097 * 176.04579 * 18 16 14 47 47 H 1.00894 * 111.00121 * 300.00007 * 18 16 14 48 48 H 1.09001 * 109.47538 * 305.35812 * 19 16 14 49 49 H 1.09004 * 109.46842 * 65.35217 * 19 16 14 50 50 H 1.09005 * 109.46798 * 300.00450 * 20 19 16 51 51 H 1.08996 * 109.47154 * 60.00021 * 20 19 16 52 52 H 0.96999 * 120.00121 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1285 2.1192 1.2607 5 6 3.4973 1.9016 1.8522 6 6 4.5333 2.7582 1.5276 7 6 5.7891 2.5614 2.0675 8 6 6.0109 1.5018 2.9379 9 7 7.2798 1.2994 3.4853 10 6 8.4086 2.1211 3.0413 11 6 7.4821 0.2656 4.5035 12 6 4.9692 0.6403 3.2581 13 6 3.7147 0.8458 2.7184 14 6 2.3663 1.9730 -1.1598 15 8 2.6775 3.1451 -1.1731 16 6 2.3687 1.1782 -2.4403 17 1 2.5579 0.1285 -2.2159 18 7 3.4211 1.6864 -3.3301 19 6 1.0089 1.3155 -3.1282 20 6 0.9646 0.4045 -4.3567 21 6 -0.3744 0.5402 -5.0345 22 1 -1.1195 1.2089 -4.6294 23 6 -0.6488 -0.1902 -6.1713 24 7 -1.8176 -0.0722 -6.7627 25 14 0.6396 -1.3473 -6.8716 26 1 0.4763 -2.6940 -6.2673 27 1 0.4720 -1.4419 -8.3441 28 1 1.9947 -0.8261 -6.5601 29 1 -0.3633 -1.0230 0.0975 30 1 -0.3633 0.5960 0.8373 31 1 -0.3634 0.4272 -0.9347 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8899 34 1 1.3704 1.7624 1.9580 35 1 1.9784 3.1825 1.0736 36 1 4.3603 3.5816 0.8505 37 1 6.5978 3.2305 1.8132 38 1 8.4798 3.0098 3.6683 39 1 9.3307 1.5453 3.1212 40 1 8.2552 2.4193 2.0043 41 1 6.5584 -0.2969 4.6385 42 1 8.2752 -0.4099 4.1828 43 1 7.7633 0.7345 5.4464 44 1 5.1392 -0.1868 3.9314 45 1 2.9034 0.1786 2.9699 46 1 3.4859 1.1290 -4.1687 47 1 3.2680 2.6584 -3.5530 48 1 0.2196 1.0277 -2.4337 49 1 0.8611 2.3502 -3.4376 50 1 1.7539 0.6925 -5.0511 51 1 1.1124 -0.6301 -4.0473 52 1 -2.0105 -0.5857 -7.5626 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000818208965.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:12:24 Heat of formation + Delta-G solvation = -0.016411 kcal Electronic energy + Delta-G solvation = -29111.025442 eV Core-core repulsion = 25303.548664 eV Total energy + Delta-G solvation = -3807.476778 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.26822 -39.46932 -36.88034 -35.61437 -35.55969 -32.79741 -31.67590 -31.28255 -30.31180 -29.79808 -28.44451 -27.55378 -26.16221 -24.27466 -23.50956 -22.74474 -22.32463 -20.67130 -20.21282 -18.61057 -17.65755 -17.38713 -16.73663 -16.29236 -15.95800 -15.61476 -15.34942 -14.88390 -14.59434 -14.35879 -14.19773 -14.01931 -13.95922 -13.74963 -13.66331 -13.31205 -12.91454 -12.77801 -12.67910 -12.65923 -12.47133 -12.30382 -12.21488 -12.01435 -11.94286 -11.67820 -11.62407 -11.17965 -11.15570 -10.81009 -10.77430 -10.28333 -9.98903 -9.93268 -9.84341 -9.29293 -9.27223 -8.96286 -8.60051 -8.57235 -8.25997 -7.42618 -6.09735 -4.08892 1.39910 1.44109 2.86711 2.94865 3.15554 3.25963 3.34468 3.36070 3.88737 4.39291 4.55437 4.64618 4.72918 4.89063 4.92802 4.94249 4.97885 5.02005 5.09007 5.22475 5.23420 5.24761 5.30847 5.33835 5.35247 5.38101 5.42476 5.56303 5.59364 5.64729 5.68229 5.77236 5.83984 5.92170 6.01856 6.11835 6.16899 6.33924 6.35976 6.43876 6.63390 6.70705 6.75051 6.77181 7.00667 7.15493 7.25071 7.30079 7.37655 7.60694 7.69423 7.81876 8.45991 8.47963 8.94638 9.51704 11.03484 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.018403 B = 0.002447 C = 0.002376 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1521.095593 B =11437.762962 C =11782.297608 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.102 3.898 3 N -0.609 5.609 4 C 0.161 3.839 5 C -0.159 4.159 6 C -0.044 4.044 7 C -0.198 4.198 8 C 0.213 3.787 9 N -0.641 5.641 10 C 0.095 3.905 11 C 0.091 3.909 12 C -0.204 4.204 13 C -0.059 4.059 14 C 0.533 3.467 15 O -0.539 6.539 16 C 0.069 3.931 17 H 0.095 0.905 18 N -0.832 5.832 19 C -0.132 4.132 20 C -0.010 4.010 21 C -0.521 4.521 22 H 0.071 0.929 23 C 0.067 3.933 24 N -0.901 5.901 25 Si 0.881 3.119 26 H -0.277 1.277 27 H -0.288 1.288 28 H -0.265 1.265 29 H 0.067 0.933 30 H 0.055 0.945 31 H 0.071 0.929 32 H 0.086 0.914 33 H 0.072 0.928 34 H 0.079 0.921 35 H 0.088 0.912 36 H 0.127 0.873 37 H 0.119 0.881 38 H 0.046 0.954 39 H 0.064 0.936 40 H 0.069 0.931 41 H 0.078 0.922 42 H 0.053 0.947 43 H 0.049 0.951 44 H 0.121 0.879 45 H 0.118 0.882 46 H 0.350 0.650 47 H 0.348 0.652 48 H 0.066 0.934 49 H 0.061 0.939 50 H 0.015 0.985 51 H 0.013 0.987 52 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.416 -0.171 23.829 28.937 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.021 4.021 3 N -0.343 5.343 4 C 0.039 3.961 5 C -0.162 4.162 6 C -0.064 4.064 7 C -0.220 4.220 8 C 0.113 3.887 9 N -0.354 5.354 10 C -0.048 4.048 11 C -0.052 4.052 12 C -0.226 4.226 13 C -0.078 4.078 14 C 0.322 3.678 15 O -0.415 6.415 16 C -0.046 4.046 17 H 0.113 0.887 18 N -0.364 5.364 19 C -0.171 4.171 20 C -0.047 4.047 21 C -0.559 4.559 22 H 0.089 0.911 23 C -0.135 4.135 24 N -0.540 5.540 25 Si 0.708 3.292 26 H -0.203 1.203 27 H -0.214 1.214 28 H -0.190 1.190 29 H 0.086 0.914 30 H 0.074 0.926 31 H 0.090 0.910 32 H 0.104 0.896 33 H 0.091 0.909 34 H 0.097 0.903 35 H 0.106 0.894 36 H 0.144 0.856 37 H 0.137 0.863 38 H 0.064 0.936 39 H 0.083 0.917 40 H 0.087 0.913 41 H 0.096 0.904 42 H 0.072 0.928 43 H 0.068 0.932 44 H 0.139 0.861 45 H 0.136 0.864 46 H 0.164 0.836 47 H 0.161 0.839 48 H 0.085 0.915 49 H 0.080 0.920 50 H 0.033 0.967 51 H 0.031 0.969 52 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 17.157 0.202 24.333 29.774 hybrid contribution -0.192 -0.685 -1.105 1.315 sum 16.966 -0.483 23.228 28.768 Atomic orbital electron populations 1.22326 0.95451 1.02480 1.03272 1.21651 0.94736 0.82447 1.03302 1.48012 1.65749 1.14372 1.06145 1.20162 0.92999 0.98257 0.84656 1.19988 0.96716 0.98140 1.01348 1.20961 0.91507 0.97989 0.95908 1.20676 0.98176 0.99953 1.03175 1.17854 0.84779 0.93544 0.92559 1.46280 1.06040 1.39248 1.43840 1.21586 0.88358 0.94707 1.00175 1.21668 1.02290 0.90698 0.90573 1.20628 0.93047 1.01864 1.07090 1.20754 0.95985 0.95941 0.95140 1.20707 0.74905 0.87487 0.84747 1.90601 1.47925 1.16511 1.86427 1.21617 0.93256 0.98608 0.91085 0.88727 1.58789 1.47480 1.08511 1.21636 1.22277 0.94165 1.01731 0.98958 1.19562 0.98094 0.94245 0.92793 1.21061 0.98735 1.25954 1.10174 0.91076 1.25043 0.95249 0.96642 0.96539 1.69914 1.21889 1.41863 1.20303 0.86771 0.82685 0.81509 0.78244 1.20277 1.21381 1.18984 0.91398 0.92587 0.91020 0.89551 0.90920 0.90277 0.89374 0.85556 0.86265 0.93560 0.91719 0.91251 0.90392 0.92797 0.93203 0.86137 0.86367 0.83584 0.83879 0.91541 0.92021 0.96685 0.96909 0.92673 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.99 10.23 37.16 0.38 -1.61 16 2 C 0.10 1.15 6.11 -4.04 -0.02 1.12 16 3 N -0.61 -8.18 2.46 -175.06 -0.43 -8.61 16 4 C 0.16 1.93 5.59 -5.20 -0.03 1.90 16 5 C -0.16 -1.90 5.46 -104.59 -0.57 -2.47 16 6 C -0.04 -0.57 9.69 -39.61 -0.38 -0.96 16 7 C -0.20 -2.32 9.16 -39.38 -0.36 -2.68 16 8 C 0.21 2.33 6.53 -83.79 -0.55 1.78 16 9 N -0.64 -5.70 3.41 -187.55 -0.64 -6.34 16 10 C 0.09 0.66 10.09 59.85 0.60 1.27 16 11 C 0.09 0.58 10.63 59.85 0.64 1.21 16 12 C -0.20 -2.09 9.31 -39.38 -0.37 -2.45 16 13 C -0.06 -0.61 9.69 -39.61 -0.38 -1.00 16 14 C 0.53 8.86 6.82 -10.99 -0.07 8.78 16 15 O -0.54 -10.29 15.72 5.55 0.09 -10.20 16 16 C 0.07 1.16 2.58 -68.87 -0.18 0.98 16 17 H 0.10 1.48 5.85 -51.93 -0.30 1.18 16 18 N -0.83 -13.91 9.05 -5.66 -0.05 -13.96 16 19 C -0.13 -2.55 4.78 -26.73 -0.13 -2.67 16 20 C -0.01 -0.21 3.81 -27.89 -0.11 -0.32 16 21 C -0.52 -14.49 9.66 -34.44 -0.33 -14.82 16 22 H 0.07 2.15 7.99 -52.48 -0.42 1.73 16 23 C 0.07 1.91 5.47 -17.82 -0.10 1.81 16 24 N -0.90 -27.43 13.96 55.43 0.77 -26.66 16 25 Si 0.88 21.17 27.47 -169.99 -4.67 16.51 16 26 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 27 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 28 H -0.27 -6.05 6.54 56.52 0.37 -5.68 16 29 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.06 0.57 8.03 -51.92 -0.42 0.16 16 31 H 0.07 0.99 5.57 -51.93 -0.29 0.70 16 32 H 0.09 1.03 5.48 -51.93 -0.28 0.74 16 33 H 0.07 0.67 8.12 -51.93 -0.42 0.25 16 34 H 0.08 0.76 7.91 -51.93 -0.41 0.35 16 35 H 0.09 1.17 7.30 -51.93 -0.38 0.79 16 36 H 0.13 1.77 7.84 -52.49 -0.41 1.36 16 37 H 0.12 1.24 6.32 -52.49 -0.33 0.91 16 38 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 39 H 0.06 0.35 8.07 -51.92 -0.42 -0.07 16 40 H 0.07 0.51 6.47 -51.93 -0.34 0.17 16 41 H 0.08 0.46 5.32 -51.93 -0.28 0.18 16 42 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 43 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 44 H 0.12 0.99 5.75 -52.49 -0.30 0.69 16 45 H 0.12 0.98 8.06 -52.48 -0.42 0.56 16 46 H 0.35 5.67 7.56 -39.29 -0.30 5.37 16 47 H 0.35 5.93 8.55 -39.30 -0.34 5.59 16 48 H 0.07 1.26 5.57 -51.93 -0.29 0.97 16 49 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 50 H 0.01 0.34 5.94 -51.93 -0.31 0.03 16 51 H 0.01 0.28 7.57 -51.93 -0.39 -0.11 16 52 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 LS Contribution 406.71 15.07 6.13 6.13 Total: -1.00 -33.08 406.71 -9.09 -42.17 By element: Atomic # 1 Polarization: 19.42 SS G_CDS: -8.33 Total: 11.09 kcal Atomic # 6 Polarization: -8.17 SS G_CDS: -1.96 Total: -10.13 kcal Atomic # 7 Polarization: -55.22 SS G_CDS: -0.35 Total: -55.56 kcal Atomic # 8 Polarization: -10.29 SS G_CDS: 0.09 Total: -10.20 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -4.67 Total: 16.51 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -33.08 -9.09 -42.17 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000818208965.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.156 kcal (2) G-P(sol) polarization free energy of solvation -33.081 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.076 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.092 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.173 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.016 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds