Wall clock time and date at job start Tue Mar 31 2020 18:12:24
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53002 * 1
3 3 N 1.46504 * 109.47134 * 2 1
4 4 C 1.46494 * 119.99969 * 83.56681 * 3 2 1
5 5 C 1.50697 * 109.47176 * 89.99726 * 4 3 2
6 6 C 1.38286 * 119.92436 * 90.00377 * 5 4 3
7 7 C 1.38109 * 120.07666 * 180.02562 * 6 5 4
8 8 C 1.38909 * 119.92067 * 359.97438 * 7 6 5
9 9 N 1.39674 * 120.07177 * 179.97438 * 8 7 6
10 10 C 1.46504 * 119.99818 * 353.93255 * 9 8 7
11 11 C 1.46504 * 120.00265 * 173.92969 * 9 8 7
12 12 C 1.38913 * 119.85513 * 0.25459 * 8 7 6
13 13 C 1.38104 * 119.92068 * 359.51603 * 12 8 7
14 14 C 1.34773 * 119.99875 * 263.56743 * 3 2 1
15 15 O 1.21285 * 119.99992 * 174.63976 * 14 3 2
16 16 C 1.50701 * 120.00520 * 354.63427 * 14 3 2
17 17 H 1.09004 * 109.46917 * 332.13288 * 16 14 3
18 18 N 1.46892 * 109.47661 * 212.12422 * 16 14 3
19 19 C 1.53003 * 109.46970 * 92.12084 * 16 14 3
20 20 C 1.53001 * 109.47424 * 185.35040 * 19 16 14
21 21 C 1.50693 * 109.47256 * 180.02562 * 20 19 16
22 22 H 1.08004 * 119.99959 * 359.97438 * 21 20 19
23 23 C 1.37875 * 120.00165 * 180.02562 * 21 20 19
24 24 N 1.31519 * 120.00293 * 179.97438 * 23 21 20
25 25 Si 1.86799 * 119.99773 * 359.97438 * 23 21 20
26 26 H 1.48505 * 109.46966 * 90.00712 * 25 23 21
27 27 H 1.48508 * 109.47183 * 210.00351 * 25 23 21
28 28 H 1.48492 * 109.47444 * 330.00614 * 25 23 21
29 29 H 1.09000 * 109.47198 * 185.44260 * 1 2 3
30 30 H 1.09009 * 109.46984 * 305.44391 * 1 2 3
31 31 H 1.09003 * 109.47314 * 65.43580 * 1 2 3
32 32 H 1.08999 * 109.46711 * 240.00558 * 2 1 3
33 33 H 1.08995 * 109.47115 * 120.00190 * 2 1 3
34 34 H 1.09004 * 109.47198 * 329.99782 * 4 3 2
35 35 H 1.09002 * 109.47040 * 209.99719 * 4 3 2
36 36 H 1.08001 * 119.96586 * 359.97438 * 6 5 4
37 37 H 1.07997 * 120.03995 * 179.97438 * 7 6 5
38 38 H 1.08996 * 109.47311 * 90.00526 * 10 9 8
39 39 H 1.09007 * 109.46770 * 209.99862 * 10 9 8
40 40 H 1.08990 * 109.47417 * 329.99627 * 10 9 8
41 41 H 1.08997 * 109.46665 * 5.05162 * 11 9 8
42 42 H 1.09001 * 109.47068 * 125.04440 * 11 9 8
43 43 H 1.08996 * 109.47170 * 245.04749 * 11 9 8
44 44 H 1.07997 * 120.04068 * 179.75232 * 12 8 7
45 45 H 1.08005 * 119.96244 * 180.23406 * 13 12 8
46 46 H 1.00907 * 111.00097 * 176.04579 * 18 16 14
47 47 H 1.00894 * 111.00121 * 300.00007 * 18 16 14
48 48 H 1.09001 * 109.47538 * 305.35812 * 19 16 14
49 49 H 1.09004 * 109.46842 * 65.35217 * 19 16 14
50 50 H 1.09005 * 109.46798 * 300.00450 * 20 19 16
51 51 H 1.08996 * 109.47154 * 60.00021 * 20 19 16
52 52 H 0.96999 * 120.00121 * 179.97438 * 24 23 21
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 7 2.0184 1.3812 0.0000
4 6 2.1285 2.1192 1.2607
5 6 3.4973 1.9016 1.8522
6 6 4.5333 2.7582 1.5276
7 6 5.7891 2.5614 2.0675
8 6 6.0109 1.5018 2.9379
9 7 7.2798 1.2994 3.4853
10 6 8.4086 2.1211 3.0413
11 6 7.4821 0.2656 4.5035
12 6 4.9692 0.6403 3.2581
13 6 3.7147 0.8458 2.7184
14 6 2.3663 1.9730 -1.1598
15 8 2.6775 3.1451 -1.1731
16 6 2.3687 1.1782 -2.4403
17 1 2.5579 0.1285 -2.2159
18 7 3.4211 1.6864 -3.3301
19 6 1.0089 1.3155 -3.1282
20 6 0.9646 0.4045 -4.3567
21 6 -0.3744 0.5402 -5.0345
22 1 -1.1195 1.2089 -4.6294
23 6 -0.6488 -0.1902 -6.1713
24 7 -1.8176 -0.0722 -6.7627
25 14 0.6396 -1.3473 -6.8716
26 1 0.4763 -2.6940 -6.2673
27 1 0.4720 -1.4419 -8.3441
28 1 1.9947 -0.8261 -6.5601
29 1 -0.3633 -1.0230 0.0975
30 1 -0.3633 0.5960 0.8373
31 1 -0.3634 0.4272 -0.9347
32 1 1.8933 -0.5138 -0.8900
33 1 1.8933 -0.5138 0.8899
34 1 1.3704 1.7624 1.9580
35 1 1.9784 3.1825 1.0736
36 1 4.3603 3.5816 0.8505
37 1 6.5978 3.2305 1.8132
38 1 8.4798 3.0098 3.6683
39 1 9.3307 1.5453 3.1212
40 1 8.2552 2.4193 2.0043
41 1 6.5584 -0.2969 4.6385
42 1 8.2752 -0.4099 4.1828
43 1 7.7633 0.7345 5.4464
44 1 5.1392 -0.1868 3.9314
45 1 2.9034 0.1786 2.9699
46 1 3.4859 1.1290 -4.1687
47 1 3.2680 2.6584 -3.5530
48 1 0.2196 1.0277 -2.4337
49 1 0.8611 2.3502 -3.4376
50 1 1.7539 0.6925 -5.0511
51 1 1.1124 -0.6301 -4.0473
52 1 -2.0105 -0.5857 -7.5626
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000818208965.mol2 52
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 18:12:24
Heat of formation + Delta-G solvation = -0.016411 kcal
Electronic energy + Delta-G solvation = -29111.025442 eV
Core-core repulsion = 25303.548664 eV
Total energy + Delta-G solvation = -3807.476778 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 333.216 amu
Computer time = 0.85 seconds
Orbital eigenvalues (eV)
-40.26822 -39.46932 -36.88034 -35.61437 -35.55969 -32.79741 -31.67590 -31.28255
-30.31180 -29.79808 -28.44451 -27.55378 -26.16221 -24.27466 -23.50956 -22.74474
-22.32463 -20.67130 -20.21282 -18.61057 -17.65755 -17.38713 -16.73663 -16.29236
-15.95800 -15.61476 -15.34942 -14.88390 -14.59434 -14.35879 -14.19773 -14.01931
-13.95922 -13.74963 -13.66331 -13.31205 -12.91454 -12.77801 -12.67910 -12.65923
-12.47133 -12.30382 -12.21488 -12.01435 -11.94286 -11.67820 -11.62407 -11.17965
-11.15570 -10.81009 -10.77430 -10.28333 -9.98903 -9.93268 -9.84341 -9.29293
-9.27223 -8.96286 -8.60051 -8.57235 -8.25997 -7.42618 -6.09735 -4.08892
1.39910 1.44109 2.86711 2.94865 3.15554 3.25963 3.34468 3.36070
3.88737 4.39291 4.55437 4.64618 4.72918 4.89063 4.92802 4.94249
4.97885 5.02005 5.09007 5.22475 5.23420 5.24761 5.30847 5.33835
5.35247 5.38101 5.42476 5.56303 5.59364 5.64729 5.68229 5.77236
5.83984 5.92170 6.01856 6.11835 6.16899 6.33924 6.35976 6.43876
6.63390 6.70705 6.75051 6.77181 7.00667 7.15493 7.25071 7.30079
7.37655 7.60694 7.69423 7.81876 8.45991 8.47963 8.94638 9.51704
11.03484
Molecular weight = 333.22amu
Principal moments of inertia in cm(-1)
A = 0.018403 B = 0.002447 C = 0.002376
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1521.095593 B =11437.762962 C =11782.297608
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.177 4.177
2 C 0.102 3.898
3 N -0.609 5.609
4 C 0.161 3.839
5 C -0.159 4.159
6 C -0.044 4.044
7 C -0.198 4.198
8 C 0.213 3.787
9 N -0.641 5.641
10 C 0.095 3.905
11 C 0.091 3.909
12 C -0.204 4.204
13 C -0.059 4.059
14 C 0.533 3.467
15 O -0.539 6.539
16 C 0.069 3.931
17 H 0.095 0.905
18 N -0.832 5.832
19 C -0.132 4.132
20 C -0.010 4.010
21 C -0.521 4.521
22 H 0.071 0.929
23 C 0.067 3.933
24 N -0.901 5.901
25 Si 0.881 3.119
26 H -0.277 1.277
27 H -0.288 1.288
28 H -0.265 1.265
29 H 0.067 0.933
30 H 0.055 0.945
31 H 0.071 0.929
32 H 0.086 0.914
33 H 0.072 0.928
34 H 0.079 0.921
35 H 0.088 0.912
36 H 0.127 0.873
37 H 0.119 0.881
38 H 0.046 0.954
39 H 0.064 0.936
40 H 0.069 0.931
41 H 0.078 0.922
42 H 0.053 0.947
43 H 0.049 0.951
44 H 0.121 0.879
45 H 0.118 0.882
46 H 0.350 0.650
47 H 0.348 0.652
48 H 0.066 0.934
49 H 0.061 0.939
50 H 0.015 0.985
51 H 0.013 0.987
52 H 0.263 0.737
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 16.416 -0.171 23.829 28.937
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.235 4.235
2 C -0.021 4.021
3 N -0.343 5.343
4 C 0.039 3.961
5 C -0.162 4.162
6 C -0.064 4.064
7 C -0.220 4.220
8 C 0.113 3.887
9 N -0.354 5.354
10 C -0.048 4.048
11 C -0.052 4.052
12 C -0.226 4.226
13 C -0.078 4.078
14 C 0.322 3.678
15 O -0.415 6.415
16 C -0.046 4.046
17 H 0.113 0.887
18 N -0.364 5.364
19 C -0.171 4.171
20 C -0.047 4.047
21 C -0.559 4.559
22 H 0.089 0.911
23 C -0.135 4.135
24 N -0.540 5.540
25 Si 0.708 3.292
26 H -0.203 1.203
27 H -0.214 1.214
28 H -0.190 1.190
29 H 0.086 0.914
30 H 0.074 0.926
31 H 0.090 0.910
32 H 0.104 0.896
33 H 0.091 0.909
34 H 0.097 0.903
35 H 0.106 0.894
36 H 0.144 0.856
37 H 0.137 0.863
38 H 0.064 0.936
39 H 0.083 0.917
40 H 0.087 0.913
41 H 0.096 0.904
42 H 0.072 0.928
43 H 0.068 0.932
44 H 0.139 0.861
45 H 0.136 0.864
46 H 0.164 0.836
47 H 0.161 0.839
48 H 0.085 0.915
49 H 0.080 0.920
50 H 0.033 0.967
51 H 0.031 0.969
52 H 0.073 0.927
Dipole moment (debyes) X Y Z Total
from point charges 17.157 0.202 24.333 29.774
hybrid contribution -0.192 -0.685 -1.105 1.315
sum 16.966 -0.483 23.228 28.768
Atomic orbital electron populations
1.22326 0.95451 1.02480 1.03272 1.21651 0.94736 0.82447 1.03302
1.48012 1.65749 1.14372 1.06145 1.20162 0.92999 0.98257 0.84656
1.19988 0.96716 0.98140 1.01348 1.20961 0.91507 0.97989 0.95908
1.20676 0.98176 0.99953 1.03175 1.17854 0.84779 0.93544 0.92559
1.46280 1.06040 1.39248 1.43840 1.21586 0.88358 0.94707 1.00175
1.21668 1.02290 0.90698 0.90573 1.20628 0.93047 1.01864 1.07090
1.20754 0.95985 0.95941 0.95140 1.20707 0.74905 0.87487 0.84747
1.90601 1.47925 1.16511 1.86427 1.21617 0.93256 0.98608 0.91085
0.88727 1.58789 1.47480 1.08511 1.21636 1.22277 0.94165 1.01731
0.98958 1.19562 0.98094 0.94245 0.92793 1.21061 0.98735 1.25954
1.10174 0.91076 1.25043 0.95249 0.96642 0.96539 1.69914 1.21889
1.41863 1.20303 0.86771 0.82685 0.81509 0.78244 1.20277 1.21381
1.18984 0.91398 0.92587 0.91020 0.89551 0.90920 0.90277 0.89374
0.85556 0.86265 0.93560 0.91719 0.91251 0.90392 0.92797 0.93203
0.86137 0.86367 0.83584 0.83879 0.91541 0.92021 0.96685 0.96909
0.92673
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.18 -1.99 10.23 37.16 0.38 -1.61 16
2 C 0.10 1.15 6.11 -4.04 -0.02 1.12 16
3 N -0.61 -8.18 2.46 -175.06 -0.43 -8.61 16
4 C 0.16 1.93 5.59 -5.20 -0.03 1.90 16
5 C -0.16 -1.90 5.46 -104.59 -0.57 -2.47 16
6 C -0.04 -0.57 9.69 -39.61 -0.38 -0.96 16
7 C -0.20 -2.32 9.16 -39.38 -0.36 -2.68 16
8 C 0.21 2.33 6.53 -83.79 -0.55 1.78 16
9 N -0.64 -5.70 3.41 -187.55 -0.64 -6.34 16
10 C 0.09 0.66 10.09 59.85 0.60 1.27 16
11 C 0.09 0.58 10.63 59.85 0.64 1.21 16
12 C -0.20 -2.09 9.31 -39.38 -0.37 -2.45 16
13 C -0.06 -0.61 9.69 -39.61 -0.38 -1.00 16
14 C 0.53 8.86 6.82 -10.99 -0.07 8.78 16
15 O -0.54 -10.29 15.72 5.55 0.09 -10.20 16
16 C 0.07 1.16 2.58 -68.87 -0.18 0.98 16
17 H 0.10 1.48 5.85 -51.93 -0.30 1.18 16
18 N -0.83 -13.91 9.05 -5.66 -0.05 -13.96 16
19 C -0.13 -2.55 4.78 -26.73 -0.13 -2.67 16
20 C -0.01 -0.21 3.81 -27.89 -0.11 -0.32 16
21 C -0.52 -14.49 9.66 -34.44 -0.33 -14.82 16
22 H 0.07 2.15 7.99 -52.48 -0.42 1.73 16
23 C 0.07 1.91 5.47 -17.82 -0.10 1.81 16
24 N -0.90 -27.43 13.96 55.43 0.77 -26.66 16
25 Si 0.88 21.17 27.47 -169.99 -4.67 16.51 16
26 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16
27 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16
28 H -0.27 -6.05 6.54 56.52 0.37 -5.68 16
29 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16
30 H 0.06 0.57 8.03 -51.92 -0.42 0.16 16
31 H 0.07 0.99 5.57 -51.93 -0.29 0.70 16
32 H 0.09 1.03 5.48 -51.93 -0.28 0.74 16
33 H 0.07 0.67 8.12 -51.93 -0.42 0.25 16
34 H 0.08 0.76 7.91 -51.93 -0.41 0.35 16
35 H 0.09 1.17 7.30 -51.93 -0.38 0.79 16
36 H 0.13 1.77 7.84 -52.49 -0.41 1.36 16
37 H 0.12 1.24 6.32 -52.49 -0.33 0.91 16
38 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16
39 H 0.06 0.35 8.07 -51.92 -0.42 -0.07 16
40 H 0.07 0.51 6.47 -51.93 -0.34 0.17 16
41 H 0.08 0.46 5.32 -51.93 -0.28 0.18 16
42 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16
43 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16
44 H 0.12 0.99 5.75 -52.49 -0.30 0.69 16
45 H 0.12 0.98 8.06 -52.48 -0.42 0.56 16
46 H 0.35 5.67 7.56 -39.29 -0.30 5.37 16
47 H 0.35 5.93 8.55 -39.30 -0.34 5.59 16
48 H 0.07 1.26 5.57 -51.93 -0.29 0.97 16
49 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16
50 H 0.01 0.34 5.94 -51.93 -0.31 0.03 16
51 H 0.01 0.28 7.57 -51.93 -0.39 -0.11 16
52 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16
LS Contribution 406.71 15.07 6.13 6.13
Total: -1.00 -33.08 406.71 -9.09 -42.17
By element:
Atomic # 1 Polarization: 19.42 SS G_CDS: -8.33 Total: 11.09 kcal
Atomic # 6 Polarization: -8.17 SS G_CDS: -1.96 Total: -10.13 kcal
Atomic # 7 Polarization: -55.22 SS G_CDS: -0.35 Total: -55.56 kcal
Atomic # 8 Polarization: -10.29 SS G_CDS: 0.09 Total: -10.20 kcal
Atomic # 14 Polarization: 21.17 SS G_CDS: -4.67 Total: 16.51 kcal
Total LS contribution 6.13 Total: 6.13 kcal
Total: -33.08 -9.09 -42.17 kcal
The number of atoms in the molecule is 52
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000818208965.mol2 52
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 42.156 kcal
(2) G-P(sol) polarization free energy of solvation -33.081 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.076 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.092 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.173 kcal
(6) G-S(sol) free energy of system = (1) + (5) -0.016 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.85 seconds