Wall clock time and date at job start Tue Mar 31 2020 18:12:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46504 * 109.47134 * 2 1 4 4 C 1.46494 * 119.99969 * 83.56681 * 3 2 1 5 5 C 1.50697 * 109.47176 * 89.99726 * 4 3 2 6 6 C 1.38286 * 119.92436 * 90.00377 * 5 4 3 7 7 C 1.38109 * 120.07666 * 180.02562 * 6 5 4 8 8 C 1.38909 * 119.92067 * 359.97438 * 7 6 5 9 9 N 1.39674 * 120.07177 * 179.97438 * 8 7 6 10 10 C 1.46504 * 119.99818 * 353.93255 * 9 8 7 11 11 C 1.46504 * 120.00265 * 173.92969 * 9 8 7 12 12 C 1.38913 * 119.85513 * 0.25459 * 8 7 6 13 13 C 1.38104 * 119.92068 * 359.51603 * 12 8 7 14 14 C 1.34773 * 119.99875 * 263.56743 * 3 2 1 15 15 O 1.21285 * 119.99992 * 174.63976 * 14 3 2 16 16 C 1.50701 * 120.00520 * 354.63427 * 14 3 2 17 17 H 1.09004 * 109.46917 * 332.13288 * 16 14 3 18 18 N 1.46892 * 109.47661 * 212.12422 * 16 14 3 19 19 C 1.53003 * 109.46970 * 92.12084 * 16 14 3 20 20 C 1.53001 * 109.47424 * 185.35040 * 19 16 14 21 21 C 1.50693 * 109.47256 * 180.02562 * 20 19 16 22 22 H 1.08004 * 119.99959 * 359.97438 * 21 20 19 23 23 C 1.37875 * 120.00165 * 180.02562 * 21 20 19 24 24 N 1.31519 * 120.00293 * 179.97438 * 23 21 20 25 25 Si 1.86799 * 119.99773 * 359.97438 * 23 21 20 26 26 H 1.48505 * 109.46966 * 90.00712 * 25 23 21 27 27 H 1.48508 * 109.47183 * 210.00351 * 25 23 21 28 28 H 1.48492 * 109.47444 * 330.00614 * 25 23 21 29 29 H 1.09000 * 109.47198 * 185.44260 * 1 2 3 30 30 H 1.09009 * 109.46984 * 305.44391 * 1 2 3 31 31 H 1.09003 * 109.47314 * 65.43580 * 1 2 3 32 32 H 1.08999 * 109.46711 * 240.00558 * 2 1 3 33 33 H 1.08995 * 109.47115 * 120.00190 * 2 1 3 34 34 H 1.09004 * 109.47198 * 329.99782 * 4 3 2 35 35 H 1.09002 * 109.47040 * 209.99719 * 4 3 2 36 36 H 1.08001 * 119.96586 * 359.97438 * 6 5 4 37 37 H 1.07997 * 120.03995 * 179.97438 * 7 6 5 38 38 H 1.08996 * 109.47311 * 90.00526 * 10 9 8 39 39 H 1.09007 * 109.46770 * 209.99862 * 10 9 8 40 40 H 1.08990 * 109.47417 * 329.99627 * 10 9 8 41 41 H 1.08997 * 109.46665 * 5.05162 * 11 9 8 42 42 H 1.09001 * 109.47068 * 125.04440 * 11 9 8 43 43 H 1.08996 * 109.47170 * 245.04749 * 11 9 8 44 44 H 1.07997 * 120.04068 * 179.75232 * 12 8 7 45 45 H 1.08005 * 119.96244 * 180.23406 * 13 12 8 46 46 H 1.00907 * 111.00097 * 176.04579 * 18 16 14 47 47 H 1.00894 * 111.00121 * 300.00007 * 18 16 14 48 48 H 1.09001 * 109.47538 * 305.35812 * 19 16 14 49 49 H 1.09004 * 109.46842 * 65.35217 * 19 16 14 50 50 H 1.09005 * 109.46798 * 300.00450 * 20 19 16 51 51 H 1.08996 * 109.47154 * 60.00021 * 20 19 16 52 52 H 0.96999 * 120.00121 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1285 2.1192 1.2607 5 6 3.4973 1.9016 1.8522 6 6 4.5333 2.7582 1.5276 7 6 5.7891 2.5614 2.0675 8 6 6.0109 1.5018 2.9379 9 7 7.2798 1.2994 3.4853 10 6 8.4086 2.1211 3.0413 11 6 7.4821 0.2656 4.5035 12 6 4.9692 0.6403 3.2581 13 6 3.7147 0.8458 2.7184 14 6 2.3663 1.9730 -1.1598 15 8 2.6775 3.1451 -1.1731 16 6 2.3687 1.1782 -2.4403 17 1 2.5579 0.1285 -2.2159 18 7 3.4211 1.6864 -3.3301 19 6 1.0089 1.3155 -3.1282 20 6 0.9646 0.4045 -4.3567 21 6 -0.3744 0.5402 -5.0345 22 1 -1.1195 1.2089 -4.6294 23 6 -0.6488 -0.1902 -6.1713 24 7 -1.8176 -0.0722 -6.7627 25 14 0.6396 -1.3473 -6.8716 26 1 0.4763 -2.6940 -6.2673 27 1 0.4720 -1.4419 -8.3441 28 1 1.9947 -0.8261 -6.5601 29 1 -0.3633 -1.0230 0.0975 30 1 -0.3633 0.5960 0.8373 31 1 -0.3634 0.4272 -0.9347 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8899 34 1 1.3704 1.7624 1.9580 35 1 1.9784 3.1825 1.0736 36 1 4.3603 3.5816 0.8505 37 1 6.5978 3.2305 1.8132 38 1 8.4798 3.0098 3.6683 39 1 9.3307 1.5453 3.1212 40 1 8.2552 2.4193 2.0043 41 1 6.5584 -0.2969 4.6385 42 1 8.2752 -0.4099 4.1828 43 1 7.7633 0.7345 5.4464 44 1 5.1392 -0.1868 3.9314 45 1 2.9034 0.1786 2.9699 46 1 3.4859 1.1290 -4.1687 47 1 3.2680 2.6584 -3.5530 48 1 0.2196 1.0277 -2.4337 49 1 0.8611 2.3502 -3.4376 50 1 1.7539 0.6925 -5.0511 51 1 1.1124 -0.6301 -4.0473 52 1 -2.0105 -0.5857 -7.5626 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000818208965.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:12:23 Heat of formation + Delta-G solvation = -21.045996 kcal Electronic energy + Delta-G solvation = -29111.937353 eV Core-core repulsion = 25303.548664 eV Total energy + Delta-G solvation = -3808.388689 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.36451 -40.38208 -37.79748 -37.07428 -36.55806 -34.81517 -32.54611 -32.10710 -32.06707 -30.75434 -28.99938 -28.82819 -27.43821 -25.46638 -24.54468 -23.88466 -23.15427 -22.12344 -21.30190 -19.85196 -18.97873 -18.56493 -18.24515 -17.41411 -16.71595 -16.58008 -16.26974 -15.97220 -15.90985 -15.81326 -15.57075 -15.19805 -14.81674 -14.70997 -14.68179 -14.55977 -14.45329 -14.13446 -13.59984 -13.53052 -13.41400 -13.35816 -13.15656 -12.91095 -12.84578 -12.78442 -12.76636 -12.55558 -12.37588 -12.10299 -12.02876 -11.79379 -11.57675 -11.47841 -11.36544 -10.85126 -10.76197 -10.50965 -9.80068 -9.72032 -9.59374 -8.28993 -8.15053 -6.34393 0.57197 0.58624 1.38002 1.40602 1.51729 1.65689 2.09603 2.26462 2.36810 3.02413 3.06283 3.53531 3.73292 3.88489 3.92404 4.01938 4.04389 4.14722 4.22809 4.25149 4.30624 4.40144 4.49652 4.51355 4.51633 4.57733 4.62989 4.70867 4.75652 4.76869 4.78446 4.87710 4.90228 4.91202 4.96924 4.97810 5.05310 5.21033 5.27379 5.37830 5.45359 5.52119 5.55584 5.62852 5.65473 5.83987 5.96936 6.05424 6.26226 6.36538 6.42294 6.47790 6.56854 6.73479 7.23056 7.30141 8.87778 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.018403 B = 0.002447 C = 0.002376 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1521.095593 B =11437.762962 C =11782.297608 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.097 3.903 3 N -0.601 5.601 4 C 0.162 3.838 5 C -0.171 4.171 6 C -0.064 4.064 7 C -0.213 4.213 8 C 0.208 3.792 9 N -0.646 5.646 10 C 0.090 3.910 11 C 0.085 3.915 12 C -0.207 4.207 13 C -0.054 4.054 14 C 0.526 3.474 15 O -0.573 6.573 16 C 0.077 3.923 17 H 0.115 0.885 18 N -0.831 5.831 19 C -0.120 4.120 20 C -0.003 4.003 21 C -0.532 4.532 22 H 0.025 0.975 23 C 0.002 3.998 24 N -0.952 5.952 25 Si 0.954 3.046 26 H -0.263 1.263 27 H -0.289 1.289 28 H -0.240 1.240 29 H 0.085 0.915 30 H 0.066 0.934 31 H 0.038 0.962 32 H 0.083 0.917 33 H 0.105 0.895 34 H 0.109 0.891 35 H 0.065 0.935 36 H 0.101 0.899 37 H 0.121 0.879 38 H 0.051 0.949 39 H 0.083 0.917 40 H 0.060 0.940 41 H 0.084 0.916 42 H 0.066 0.934 43 H 0.060 0.940 44 H 0.145 0.855 45 H 0.146 0.854 46 H 0.353 0.647 47 H 0.344 0.656 48 H 0.067 0.933 49 H 0.037 0.963 50 H 0.023 0.977 51 H 0.030 0.970 52 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.669 -3.061 25.973 32.132 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.024 4.024 3 N -0.333 5.333 4 C 0.040 3.960 5 C -0.174 4.174 6 C -0.083 4.083 7 C -0.235 4.235 8 C 0.106 3.894 9 N -0.358 5.358 10 C -0.053 4.053 11 C -0.057 4.057 12 C -0.229 4.229 13 C -0.073 4.073 14 C 0.314 3.686 15 O -0.452 6.452 16 C -0.037 4.037 17 H 0.132 0.868 18 N -0.363 5.363 19 C -0.160 4.160 20 C -0.040 4.040 21 C -0.570 4.570 22 H 0.043 0.957 23 C -0.194 4.194 24 N -0.593 5.593 25 Si 0.776 3.224 26 H -0.187 1.187 27 H -0.216 1.216 28 H -0.163 1.163 29 H 0.104 0.896 30 H 0.085 0.915 31 H 0.057 0.943 32 H 0.101 0.899 33 H 0.123 0.877 34 H 0.127 0.873 35 H 0.084 0.916 36 H 0.120 0.880 37 H 0.139 0.861 38 H 0.069 0.931 39 H 0.102 0.898 40 H 0.079 0.921 41 H 0.102 0.898 42 H 0.084 0.916 43 H 0.078 0.922 44 H 0.163 0.837 45 H 0.164 0.836 46 H 0.168 0.832 47 H 0.157 0.843 48 H 0.086 0.914 49 H 0.056 0.944 50 H 0.041 0.959 51 H 0.048 0.952 52 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 19.435 -2.707 26.530 32.998 hybrid contribution -0.925 0.272 -1.668 1.926 sum 18.510 -2.436 24.862 31.091 Atomic orbital electron populations 1.22285 0.95399 1.03511 1.01927 1.21866 0.94668 0.81168 1.04741 1.48083 1.64239 1.15245 1.05708 1.20255 0.94244 0.97091 0.84371 1.19966 0.96085 0.98959 1.02414 1.20893 0.92751 0.98148 0.96511 1.20740 0.97874 1.00898 1.04036 1.18034 0.86035 0.93205 0.92173 1.46558 1.05612 1.39707 1.43927 1.21696 0.88621 0.95185 0.99764 1.21848 1.03076 0.90412 0.90337 1.20954 0.92679 1.02198 1.07078 1.21019 0.96932 0.95365 0.93953 1.20709 0.75115 0.87075 0.85652 1.90590 1.49732 1.17844 1.87004 1.21540 0.91315 0.99797 0.91077 0.86790 1.58805 1.47189 1.08397 1.21861 1.22091 0.96283 0.99503 0.98104 1.19470 0.95112 0.95805 0.93654 1.21394 1.00173 1.24816 1.10608 0.95680 1.26074 0.97682 0.98729 0.96933 1.70084 1.24520 1.43530 1.21141 0.85611 0.80414 0.79271 0.77070 1.18742 1.21552 1.16334 0.89623 0.91524 0.94255 0.89875 0.87656 0.87280 0.91613 0.88038 0.86073 0.93066 0.89813 0.92123 0.89788 0.91590 0.92153 0.83741 0.83584 0.83153 0.84287 0.91418 0.94427 0.95889 0.95177 0.92535 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.54 10.23 71.98 0.74 -2.80 16 2 C 0.10 1.93 6.11 86.38 0.53 2.46 16 3 N -0.60 -15.40 2.46 -826.16 -2.03 -17.43 16 4 C 0.16 3.71 5.59 85.63 0.48 4.19 16 5 C -0.17 -3.90 5.46 -19.84 -0.11 -4.01 16 6 C -0.06 -1.68 9.69 22.25 0.22 -1.47 16 7 C -0.21 -5.01 9.16 22.40 0.21 -4.80 16 8 C 0.21 4.20 6.53 38.21 0.25 4.45 16 9 N -0.65 -10.11 3.41 -747.27 -2.55 -12.66 16 10 C 0.09 1.12 10.09 127.77 1.29 2.41 16 11 C 0.09 0.82 10.63 127.77 1.36 2.18 16 12 C -0.21 -3.62 9.31 22.40 0.21 -3.42 16 13 C -0.05 -0.96 9.69 22.25 0.22 -0.74 16 14 C 0.53 17.47 6.82 87.66 0.60 18.07 16 15 O -0.57 -22.64 15.72 -3.05 -0.05 -22.68 16 16 C 0.08 2.53 2.58 44.17 0.11 2.65 16 17 H 0.11 3.30 5.85 -2.39 -0.01 3.28 16 18 N -0.83 -27.15 9.05 -171.81 -1.56 -28.71 16 19 C -0.12 -4.68 4.78 30.60 0.15 -4.53 16 20 C 0.00 -0.13 3.81 29.85 0.11 -0.02 16 21 C -0.53 -30.24 9.66 25.60 0.25 -30.00 16 22 H 0.02 1.60 7.99 -2.91 -0.02 1.57 16 23 C 0.00 0.14 5.47 84.65 0.46 0.61 16 24 N -0.95 -59.54 13.96 21.45 0.30 -59.24 16 25 Si 0.95 42.87 27.47 68.60 1.88 44.75 16 26 H -0.26 -11.18 7.11 99.48 0.71 -10.47 16 27 H -0.29 -13.03 7.11 99.48 0.71 -12.32 16 28 H -0.24 -9.76 6.54 99.48 0.65 -9.11 16 29 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 30 H 0.07 1.21 8.03 -2.38 -0.02 1.19 16 31 H 0.04 1.06 5.57 -2.39 -0.01 1.05 16 32 H 0.08 1.73 5.48 -2.39 -0.01 1.72 16 33 H 0.11 1.46 8.12 -2.39 -0.02 1.44 16 34 H 0.11 1.81 7.91 -2.38 -0.02 1.79 16 35 H 0.07 1.81 7.30 -2.39 -0.02 1.79 16 36 H 0.10 3.10 7.84 -2.91 -0.02 3.08 16 37 H 0.12 2.63 6.32 -2.91 -0.02 2.61 16 38 H 0.05 0.58 8.14 -2.39 -0.02 0.56 16 39 H 0.08 0.71 8.07 -2.38 -0.02 0.69 16 40 H 0.06 0.86 6.47 -2.39 -0.02 0.84 16 41 H 0.08 0.69 5.32 -2.39 -0.01 0.68 16 42 H 0.07 0.49 8.14 -2.39 -0.02 0.47 16 43 H 0.06 0.47 8.14 -2.39 -0.02 0.45 16 44 H 0.15 1.78 5.75 -2.91 -0.02 1.76 16 45 H 0.15 1.73 8.06 -2.91 -0.02 1.71 16 46 H 0.35 10.88 7.56 -89.69 -0.68 10.20 16 47 H 0.34 11.83 8.55 -89.70 -0.77 11.07 16 48 H 0.07 2.61 5.57 -2.39 -0.01 2.60 16 49 H 0.04 1.62 8.14 -2.38 -0.02 1.60 16 50 H 0.02 0.99 5.94 -2.38 -0.01 0.97 16 51 H 0.03 1.24 7.57 -2.39 -0.02 1.23 16 52 H 0.27 15.49 8.31 -92.71 -0.77 14.72 16 Total: -1.00 -74.63 406.71 2.50 -72.14 By element: Atomic # 1 Polarization: 39.16 SS G_CDS: -0.56 Total: 38.60 kcal Atomic # 6 Polarization: -21.83 SS G_CDS: 7.06 Total: -14.77 kcal Atomic # 7 Polarization: -112.20 SS G_CDS: -5.83 Total: -118.03 kcal Atomic # 8 Polarization: -22.64 SS G_CDS: -0.05 Total: -22.68 kcal Atomic # 14 Polarization: 42.87 SS G_CDS: 1.88 Total: 44.75 kcal Total: -74.63 2.50 -72.14 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000818208965.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.089 kcal (2) G-P(sol) polarization free energy of solvation -74.635 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.546 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.500 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.135 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.046 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds