Wall clock time and date at job start Tue Mar 31 2020 18:13:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46497 * 109.47034 * 2 1 4 4 C 1.46508 * 119.99617 * 269.99368 * 3 2 1 5 5 C 1.52994 * 109.47041 * 270.00142 * 4 3 2 6 6 C 1.39678 * 120.00488 * 89.99791 * 3 2 1 7 7 C 1.38905 * 120.07451 * 180.02562 * 6 3 2 8 8 C 1.38109 * 119.92227 * 180.02562 * 7 6 3 9 9 C 1.38278 * 120.07429 * 359.97438 * 8 7 6 10 10 C 1.50703 * 119.92650 * 180.02562 * 9 8 7 11 11 N 1.46499 * 109.47138 * 90.00123 * 10 9 8 12 12 C 1.34777 * 119.99665 * 180.28062 * 11 10 9 13 13 O 1.21283 * 119.99990 * 359.71991 * 12 11 10 14 14 C 1.50698 * 119.99538 * 179.72653 * 12 11 10 15 15 H 1.08994 * 109.47374 * 39.99639 * 14 12 11 16 16 N 1.46899 * 109.46954 * 159.99915 * 14 12 11 17 17 C 1.53003 * 109.47045 * 279.99176 * 14 12 11 18 18 C 1.53000 * 109.47286 * 174.99954 * 17 14 12 19 19 C 1.50701 * 109.47289 * 180.02562 * 18 17 14 20 20 H 1.08003 * 119.99592 * 0.02562 * 19 18 17 21 21 C 1.37879 * 119.99954 * 180.02562 * 19 18 17 22 22 N 1.31505 * 119.99983 * 0.02562 * 21 19 18 23 23 Si 1.86796 * 119.99858 * 180.02562 * 21 19 18 24 24 H 1.48503 * 109.47109 * 0.02562 * 23 21 19 25 25 H 1.48505 * 109.47066 * 120.00164 * 23 21 19 26 26 H 1.48493 * 109.47409 * 240.00113 * 23 21 19 27 27 C 1.38285 * 120.15362 * 0.27826 * 9 8 7 28 28 C 1.38115 * 120.06838 * 359.45082 * 27 9 8 29 29 H 1.08998 * 109.47007 * 60.00528 * 1 2 3 30 30 H 1.08998 * 109.47319 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47704 * 300.00567 * 1 2 3 32 32 H 1.08998 * 109.47704 * 239.99433 * 2 1 3 33 33 H 1.09005 * 109.46716 * 119.99721 * 2 1 3 34 34 H 1.08998 * 109.47045 * 30.00139 * 4 3 2 35 35 H 1.08998 * 109.46712 * 150.00378 * 4 3 2 36 36 H 1.09000 * 109.47034 * 180.02562 * 5 4 3 37 37 H 1.09007 * 109.47373 * 300.00015 * 5 4 3 38 38 H 1.08998 * 109.47518 * 60.00098 * 5 4 3 39 39 H 1.07999 * 120.04020 * 0.03689 * 7 6 3 40 40 H 1.08001 * 119.95794 * 179.97438 * 8 7 6 41 41 H 1.09009 * 109.46601 * 330.00026 * 10 9 8 42 42 H 1.08998 * 109.47035 * 210.00533 * 10 9 8 43 43 H 0.97001 * 119.99790 * 359.97438 * 11 10 9 44 44 H 1.00900 * 110.99932 * 296.04066 * 16 14 12 45 45 H 1.00903 * 111.00374 * 59.99775 * 16 14 12 46 46 H 1.08994 * 109.47574 * 295.00663 * 17 14 12 47 47 H 1.09004 * 109.46944 * 55.00483 * 17 14 12 48 48 H 1.08994 * 109.47393 * 300.00821 * 18 17 14 49 49 H 1.09004 * 109.46697 * 60.00377 * 18 17 14 50 50 H 0.96998 * 120.00408 * 179.97438 * 22 21 19 51 51 H 1.07996 * 119.96896 * 179.70164 * 27 9 8 52 52 H 1.08007 * 120.03225 * 180.27979 * 28 27 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0717 -1.2688 5 6 3.7075 1.8312 -1.7104 6 6 2.2510 2.0398 1.2096 7 6 2.7135 3.3496 1.2113 8 6 2.9431 3.9975 2.4091 9 6 2.7126 3.3441 3.6058 10 6 2.9638 4.0545 4.9109 11 7 1.7427 4.7446 5.3341 12 6 1.7330 5.4559 6.4788 13 8 2.7336 5.5205 7.1611 14 6 0.4788 6.1708 6.9109 15 1 -0.3872 5.5415 6.7058 16 7 0.5481 6.4543 8.3507 17 6 0.3488 7.4850 6.1382 18 6 -0.9847 8.1505 6.4843 19 6 -1.1129 9.4445 5.7228 20 1 -0.3225 9.7605 5.0580 21 6 -2.2393 10.2251 5.8746 22 7 -3.2015 9.8406 6.6844 23 14 -2.3986 11.8288 4.9301 24 1 -1.1893 12.0321 4.0925 25 1 -3.5999 11.7729 4.0589 26 1 -2.5335 12.9559 5.8874 27 6 2.2572 2.0384 3.6077 28 6 2.0202 1.3864 2.4134 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3634 0.5139 0.8899 32 1 1.8934 -0.5139 -0.8899 33 1 1.8932 -0.5138 0.8901 34 1 1.5818 1.6875 -2.0285 35 1 2.0956 3.1409 -1.1385 36 1 3.8894 2.3454 -2.6541 37 1 4.3883 2.2154 -0.9507 38 1 3.8745 0.7620 -1.8406 39 1 2.8932 3.8607 0.2770 40 1 3.3031 5.0158 2.4111 41 1 3.7654 4.7816 4.7803 42 1 3.2524 3.3280 5.6704 43 1 0.9426 4.6932 4.7881 44 1 0.5694 5.5998 8.8868 45 1 1.3432 7.0367 8.5667 46 1 1.1683 8.1497 6.4113 47 1 0.3867 7.2824 5.0679 48 1 -1.8042 7.4858 6.2112 49 1 -1.0226 8.3531 7.5547 50 1 -3.9937 10.3898 6.7916 51 1 2.0828 1.5293 4.5440 52 1 1.6602 0.3681 2.4157 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000827340468.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:13:36 Heat of formation + Delta-G solvation = -24.409292 kcal Electronic energy + Delta-G solvation = -27969.354562 eV Core-core repulsion = 24160.820029 eV Total energy + Delta-G solvation = -3808.534533 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.22428 -39.52691 -37.45317 -35.21058 -34.55273 -32.93298 -32.75402 -31.46375 -30.81194 -30.04514 -28.90676 -26.68917 -25.34716 -24.46604 -23.40817 -22.30824 -22.29760 -20.58137 -20.30891 -19.70131 -17.91770 -17.09824 -16.55694 -16.28813 -15.99099 -15.41985 -15.26575 -15.20325 -14.64708 -14.55527 -14.36567 -14.29635 -14.02807 -13.78253 -13.61280 -13.36313 -13.30764 -12.87495 -12.64603 -12.52596 -12.45529 -12.27653 -12.15314 -11.95973 -11.58759 -11.49885 -11.46038 -11.38267 -10.89395 -10.88746 -10.63853 -10.48815 -10.21558 -9.95981 -9.74906 -9.32656 -9.10747 -8.96329 -8.91894 -8.31678 -8.16703 -7.53062 -5.90933 -3.92702 1.27086 1.29116 2.72225 2.88018 3.35709 3.36447 3.43189 3.47257 3.85936 4.40248 4.44939 4.52720 4.67293 4.69398 4.73406 4.79950 4.94266 4.96193 4.97952 4.99699 5.07652 5.21741 5.25827 5.26799 5.29300 5.40244 5.44673 5.44832 5.54990 5.56993 5.62305 5.73761 5.75509 5.82809 5.87537 5.90976 6.07966 6.19194 6.48643 6.54819 6.55384 6.64861 6.71716 6.96394 7.14361 7.21765 7.46150 7.71610 7.80421 7.86511 8.00480 8.17054 8.42309 8.52263 9.15638 9.70227 11.20076 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.010494 B = 0.002283 C = 0.002037 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2667.534109 B =12258.974252 C =13742.244367 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.119 3.881 3 N -0.628 5.628 4 C 0.118 3.882 5 C -0.172 4.172 6 C 0.223 3.777 7 C -0.198 4.198 8 C -0.050 4.050 9 C -0.165 4.165 10 C 0.167 3.833 11 N -0.726 5.726 12 C 0.482 3.518 13 O -0.557 6.557 14 C 0.078 3.922 15 H 0.097 0.903 16 N -0.807 5.807 17 C -0.095 4.095 18 C 0.031 3.969 19 C -0.520 4.520 20 H 0.052 0.948 21 C 0.057 3.943 22 N -0.893 5.893 23 Si 0.888 3.112 24 H -0.274 1.274 25 H -0.285 1.285 26 H -0.284 1.284 27 C -0.052 4.052 28 C -0.200 4.200 29 H 0.056 0.944 30 H 0.063 0.937 31 H 0.060 0.940 32 H 0.071 0.929 33 H 0.075 0.925 34 H 0.072 0.928 35 H 0.077 0.923 36 H 0.063 0.937 37 H 0.059 0.941 38 H 0.054 0.946 39 H 0.122 0.878 40 H 0.123 0.877 41 H 0.069 0.931 42 H 0.068 0.932 43 H 0.403 0.597 44 H 0.333 0.667 45 H 0.347 0.653 46 H 0.052 0.948 47 H 0.053 0.947 48 H 0.013 0.987 49 H 0.035 0.965 50 H 0.258 0.742 51 H 0.121 0.879 52 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.934 -23.289 -15.614 30.473 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.004 4.004 3 N -0.339 5.339 4 C -0.006 4.006 5 C -0.231 4.231 6 C 0.122 3.878 7 C -0.221 4.221 8 C -0.069 4.069 9 C -0.167 4.167 10 C 0.044 3.956 11 N -0.378 5.378 12 C 0.267 3.733 13 O -0.435 6.435 14 C -0.038 4.038 15 H 0.115 0.885 16 N -0.335 5.335 17 C -0.133 4.133 18 C -0.006 4.006 19 C -0.559 4.559 20 H 0.070 0.930 21 C -0.144 4.144 22 N -0.532 5.532 23 Si 0.716 3.284 24 H -0.199 1.199 25 H -0.211 1.211 26 H -0.211 1.211 27 C -0.072 4.072 28 C -0.222 4.222 29 H 0.075 0.925 30 H 0.082 0.918 31 H 0.080 0.920 32 H 0.090 0.910 33 H 0.093 0.907 34 H 0.091 0.909 35 H 0.095 0.905 36 H 0.082 0.918 37 H 0.078 0.922 38 H 0.073 0.927 39 H 0.140 0.860 40 H 0.141 0.859 41 H 0.087 0.913 42 H 0.086 0.914 43 H 0.238 0.762 44 H 0.145 0.855 45 H 0.161 0.839 46 H 0.071 0.929 47 H 0.072 0.928 48 H 0.031 0.969 49 H 0.053 0.947 50 H 0.068 0.932 51 H 0.139 0.861 52 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 11.748 -22.913 -15.309 29.956 hybrid contribution 0.390 0.279 -0.982 1.093 sum 12.138 -22.634 -16.291 30.414 Atomic orbital electron populations 1.22237 0.96255 1.01991 1.02744 1.21375 0.94069 0.82458 1.02509 1.46657 1.71252 1.13117 1.02852 1.21390 0.96229 0.97927 0.85007 1.22229 0.97354 1.02012 1.01500 1.17854 0.92848 0.91406 0.85707 1.20671 1.08790 0.94043 0.98558 1.20862 0.95800 0.99010 0.91258 1.19618 1.07438 0.95301 0.94373 1.20031 0.87805 0.95347 0.92442 1.46317 1.14781 1.52002 1.24723 1.22742 0.92284 0.77963 0.80262 1.90638 1.35841 1.62647 1.54417 1.21825 0.92859 0.98568 0.90503 0.88525 1.59004 1.50038 1.21220 1.03238 1.21647 1.02590 0.92088 0.96994 1.19022 0.89226 0.94212 0.98188 1.21325 1.03170 1.05799 1.25556 0.92952 1.24995 0.96023 0.97896 0.95495 1.69981 1.07983 1.38141 1.37118 0.86601 0.77863 0.84041 0.79859 1.19860 1.21142 1.21070 1.20812 0.95256 0.93692 0.97395 1.20643 1.09828 1.00784 0.90993 0.92523 0.91819 0.92044 0.91031 0.90680 0.90942 0.90491 0.91775 0.92181 0.92652 0.85967 0.85915 0.91307 0.91422 0.76219 0.85522 0.83873 0.92886 0.92845 0.96904 0.94663 0.93189 0.86122 0.86058 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.98 10.24 37.16 0.38 -0.60 16 2 C 0.12 0.67 5.88 -4.05 -0.02 0.65 16 3 N -0.63 -4.58 2.61 -171.76 -0.45 -5.02 16 4 C 0.12 0.70 5.88 -4.04 -0.02 0.67 16 5 C -0.17 -0.93 10.24 37.15 0.38 -0.55 16 6 C 0.22 2.05 6.55 -83.79 -0.55 1.50 16 7 C -0.20 -1.89 9.21 -39.38 -0.36 -2.25 16 8 C -0.05 -0.51 9.69 -39.61 -0.38 -0.90 16 9 C -0.16 -1.73 5.25 -104.59 -0.55 -2.28 16 10 C 0.17 2.00 5.80 -5.19 -0.03 1.97 16 11 N -0.73 -9.62 5.55 -61.47 -0.34 -9.96 16 12 C 0.48 7.85 7.07 -10.99 -0.08 7.77 16 13 O -0.56 -10.59 16.25 5.55 0.09 -10.50 16 14 C 0.08 1.35 3.15 -68.86 -0.22 1.14 16 15 H 0.10 1.58 8.14 -51.93 -0.42 1.16 16 16 N -0.81 -14.03 8.44 -5.66 -0.05 -14.07 16 17 C -0.09 -1.96 4.78 -26.73 -0.13 -2.09 16 18 C 0.03 0.79 4.86 -27.88 -0.14 0.66 16 19 C -0.52 -14.88 9.11 -34.44 -0.31 -15.19 16 20 H 0.05 1.46 7.74 -52.48 -0.41 1.06 16 21 C 0.06 1.65 5.46 -17.82 -0.10 1.56 16 22 N -0.89 -27.19 13.28 55.43 0.74 -26.45 16 23 Si 0.89 21.94 29.54 -169.99 -5.02 16.92 16 24 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 25 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 26 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 27 C -0.05 -0.50 9.69 -39.61 -0.38 -0.89 16 28 C -0.20 -1.82 9.21 -39.38 -0.36 -2.18 16 29 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 30 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 31 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.07 0.32 8.07 -51.93 -0.42 -0.10 16 33 H 0.07 0.41 6.20 -51.93 -0.32 0.09 16 34 H 0.07 0.35 8.07 -51.93 -0.42 -0.07 16 35 H 0.08 0.48 6.20 -51.93 -0.32 0.15 16 36 H 0.06 0.28 8.14 -51.93 -0.42 -0.15 16 37 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 38 H 0.05 0.30 8.14 -51.93 -0.42 -0.13 16 39 H 0.12 1.01 6.14 -52.49 -0.32 0.69 16 40 H 0.12 1.19 8.06 -52.49 -0.42 0.77 16 41 H 0.07 0.88 8.08 -51.92 -0.42 0.46 16 42 H 0.07 0.82 8.08 -51.93 -0.42 0.40 16 43 H 0.40 4.86 8.46 -40.82 -0.35 4.51 16 44 H 0.33 5.04 9.06 -39.29 -0.36 4.68 16 45 H 0.35 6.13 8.58 -39.29 -0.34 5.79 16 46 H 0.05 1.14 8.14 -51.93 -0.42 0.72 16 47 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 48 H 0.01 0.34 8.14 -51.93 -0.42 -0.08 16 49 H 0.03 0.99 7.75 -51.93 -0.40 0.59 16 50 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 51 H 0.12 1.03 8.06 -52.49 -0.42 0.60 16 52 H 0.12 0.92 6.14 -52.48 -0.32 0.60 16 LS Contribution 423.47 15.07 6.38 6.38 Total: -1.00 -33.32 423.47 -10.55 -43.87 By element: Atomic # 1 Polarization: 18.87 SS G_CDS: -9.02 Total: 9.85 kcal Atomic # 6 Polarization: -8.13 SS G_CDS: -2.88 Total: -11.01 kcal Atomic # 7 Polarization: -55.41 SS G_CDS: -0.10 Total: -55.51 kcal Atomic # 8 Polarization: -10.59 SS G_CDS: 0.09 Total: -10.50 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.92 kcal Total LS contribution 6.38 Total: 6.38 kcal Total: -33.32 -10.55 -43.87 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000827340468.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.458 kcal (2) G-P(sol) polarization free energy of solvation -33.319 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.861 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.867 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.409 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds