Wall clock time and date at job start Tue Mar 31 2020 18:13:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46497 * 109.47034 * 2 1 4 4 C 1.46508 * 119.99617 * 269.99368 * 3 2 1 5 5 C 1.52994 * 109.47041 * 270.00142 * 4 3 2 6 6 C 1.39678 * 120.00488 * 89.99791 * 3 2 1 7 7 C 1.38905 * 120.07451 * 180.02562 * 6 3 2 8 8 C 1.38109 * 119.92227 * 180.02562 * 7 6 3 9 9 C 1.38278 * 120.07429 * 359.97438 * 8 7 6 10 10 C 1.50703 * 119.92650 * 180.02562 * 9 8 7 11 11 N 1.46499 * 109.47138 * 90.00123 * 10 9 8 12 12 C 1.34777 * 119.99665 * 180.28062 * 11 10 9 13 13 O 1.21283 * 119.99990 * 359.71991 * 12 11 10 14 14 C 1.50698 * 119.99538 * 179.72653 * 12 11 10 15 15 H 1.08994 * 109.47374 * 39.99639 * 14 12 11 16 16 N 1.46899 * 109.46954 * 159.99915 * 14 12 11 17 17 C 1.53003 * 109.47045 * 279.99176 * 14 12 11 18 18 C 1.53000 * 109.47286 * 174.99954 * 17 14 12 19 19 C 1.50701 * 109.47289 * 180.02562 * 18 17 14 20 20 H 1.08003 * 119.99592 * 0.02562 * 19 18 17 21 21 C 1.37879 * 119.99954 * 180.02562 * 19 18 17 22 22 N 1.31505 * 119.99983 * 0.02562 * 21 19 18 23 23 Si 1.86796 * 119.99858 * 180.02562 * 21 19 18 24 24 H 1.48503 * 109.47109 * 0.02562 * 23 21 19 25 25 H 1.48505 * 109.47066 * 120.00164 * 23 21 19 26 26 H 1.48493 * 109.47409 * 240.00113 * 23 21 19 27 27 C 1.38285 * 120.15362 * 0.27826 * 9 8 7 28 28 C 1.38115 * 120.06838 * 359.45082 * 27 9 8 29 29 H 1.08998 * 109.47007 * 60.00528 * 1 2 3 30 30 H 1.08998 * 109.47319 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47704 * 300.00567 * 1 2 3 32 32 H 1.08998 * 109.47704 * 239.99433 * 2 1 3 33 33 H 1.09005 * 109.46716 * 119.99721 * 2 1 3 34 34 H 1.08998 * 109.47045 * 30.00139 * 4 3 2 35 35 H 1.08998 * 109.46712 * 150.00378 * 4 3 2 36 36 H 1.09000 * 109.47034 * 180.02562 * 5 4 3 37 37 H 1.09007 * 109.47373 * 300.00015 * 5 4 3 38 38 H 1.08998 * 109.47518 * 60.00098 * 5 4 3 39 39 H 1.07999 * 120.04020 * 0.03689 * 7 6 3 40 40 H 1.08001 * 119.95794 * 179.97438 * 8 7 6 41 41 H 1.09009 * 109.46601 * 330.00026 * 10 9 8 42 42 H 1.08998 * 109.47035 * 210.00533 * 10 9 8 43 43 H 0.97001 * 119.99790 * 359.97438 * 11 10 9 44 44 H 1.00900 * 110.99932 * 296.04066 * 16 14 12 45 45 H 1.00903 * 111.00374 * 59.99775 * 16 14 12 46 46 H 1.08994 * 109.47574 * 295.00663 * 17 14 12 47 47 H 1.09004 * 109.46944 * 55.00483 * 17 14 12 48 48 H 1.08994 * 109.47393 * 300.00821 * 18 17 14 49 49 H 1.09004 * 109.46697 * 60.00377 * 18 17 14 50 50 H 0.96998 * 120.00408 * 179.97438 * 22 21 19 51 51 H 1.07996 * 119.96896 * 179.70164 * 27 9 8 52 52 H 1.08007 * 120.03225 * 180.27979 * 28 27 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0717 -1.2688 5 6 3.7075 1.8312 -1.7104 6 6 2.2510 2.0398 1.2096 7 6 2.7135 3.3496 1.2113 8 6 2.9431 3.9975 2.4091 9 6 2.7126 3.3441 3.6058 10 6 2.9638 4.0545 4.9109 11 7 1.7427 4.7446 5.3341 12 6 1.7330 5.4559 6.4788 13 8 2.7336 5.5205 7.1611 14 6 0.4788 6.1708 6.9109 15 1 -0.3872 5.5415 6.7058 16 7 0.5481 6.4543 8.3507 17 6 0.3488 7.4850 6.1382 18 6 -0.9847 8.1505 6.4843 19 6 -1.1129 9.4445 5.7228 20 1 -0.3225 9.7605 5.0580 21 6 -2.2393 10.2251 5.8746 22 7 -3.2015 9.8406 6.6844 23 14 -2.3986 11.8288 4.9301 24 1 -1.1893 12.0321 4.0925 25 1 -3.5999 11.7729 4.0589 26 1 -2.5335 12.9559 5.8874 27 6 2.2572 2.0384 3.6077 28 6 2.0202 1.3864 2.4134 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3634 0.5139 0.8899 32 1 1.8934 -0.5139 -0.8899 33 1 1.8932 -0.5138 0.8901 34 1 1.5818 1.6875 -2.0285 35 1 2.0956 3.1409 -1.1385 36 1 3.8894 2.3454 -2.6541 37 1 4.3883 2.2154 -0.9507 38 1 3.8745 0.7620 -1.8406 39 1 2.8932 3.8607 0.2770 40 1 3.3031 5.0158 2.4111 41 1 3.7654 4.7816 4.7803 42 1 3.2524 3.3280 5.6704 43 1 0.9426 4.6932 4.7881 44 1 0.5694 5.5998 8.8868 45 1 1.3432 7.0367 8.5667 46 1 1.1683 8.1497 6.4113 47 1 0.3867 7.2824 5.0679 48 1 -1.8042 7.4858 6.2112 49 1 -1.0226 8.3531 7.5547 50 1 -3.9937 10.3898 6.7916 51 1 2.0828 1.5293 4.5440 52 1 1.6602 0.3681 2.4157 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000827340468.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:13:35 Heat of formation + Delta-G solvation = -45.331942 kcal Electronic energy + Delta-G solvation = -27970.261836 eV Core-core repulsion = 24160.820029 eV Total energy + Delta-G solvation = -3809.441807 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.15562 -40.58170 -38.15352 -36.79287 -35.66231 -34.79495 -33.42079 -32.24850 -31.90063 -31.48710 -29.65804 -28.15323 -26.61380 -24.98383 -24.93315 -23.10418 -22.94735 -22.27492 -21.21287 -20.86268 -18.82804 -18.39463 -18.00067 -17.37572 -17.16798 -16.80133 -16.43329 -16.07218 -15.98755 -15.52005 -15.41747 -15.17073 -14.92711 -14.74981 -14.62009 -14.27048 -14.18198 -13.99924 -13.81699 -13.56453 -13.35273 -13.33855 -13.27271 -12.93305 -12.81585 -12.65161 -12.50426 -12.24879 -12.21723 -12.09930 -11.86451 -11.75646 -11.64640 -11.50811 -11.24338 -11.00244 -10.72050 -10.48418 -10.10972 -9.82873 -9.60442 -8.18342 -8.12866 -6.23032 0.52772 0.54478 1.41700 1.42636 1.54013 1.56213 2.18780 2.29742 2.45516 3.01308 3.19967 3.61235 3.79968 3.85165 3.93212 3.96935 4.12122 4.14208 4.17300 4.25917 4.33672 4.36273 4.49484 4.49997 4.53738 4.57905 4.68316 4.68773 4.77078 4.80263 4.91918 4.96577 4.98160 4.99425 5.00537 5.18764 5.26942 5.29343 5.35618 5.41247 5.41490 5.46756 5.58580 5.77934 5.85982 5.93361 6.00102 6.12417 6.31850 6.40878 6.49076 6.56711 6.58818 6.95758 7.17343 7.44895 8.98528 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.010494 B = 0.002283 C = 0.002037 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2667.534109 B =12258.974252 C =13742.244367 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.115 3.885 3 N -0.628 5.628 4 C 0.113 3.887 5 C -0.166 4.166 6 C 0.221 3.779 7 C -0.208 4.208 8 C -0.058 4.058 9 C -0.176 4.176 10 C 0.172 3.828 11 N -0.711 5.711 12 C 0.488 3.512 13 O -0.584 6.584 14 C 0.086 3.914 15 H 0.109 0.891 16 N -0.819 5.819 17 C -0.081 4.081 18 C 0.039 3.961 19 C -0.541 4.541 20 H 0.055 0.945 21 C 0.000 4.000 22 N -0.930 5.930 23 Si 0.960 3.040 24 H -0.264 1.264 25 H -0.277 1.277 26 H -0.281 1.281 27 C -0.054 4.054 28 C -0.206 4.206 29 H 0.053 0.947 30 H 0.077 0.923 31 H 0.044 0.956 32 H 0.088 0.912 33 H 0.078 0.922 34 H 0.086 0.914 35 H 0.073 0.927 36 H 0.075 0.925 37 H 0.044 0.956 38 H 0.057 0.943 39 H 0.131 0.869 40 H 0.123 0.877 41 H 0.060 0.940 42 H 0.068 0.932 43 H 0.411 0.589 44 H 0.346 0.654 45 H 0.345 0.655 46 H 0.042 0.958 47 H 0.065 0.935 48 H -0.007 1.007 49 H 0.006 0.994 50 H 0.262 0.738 51 H 0.131 0.869 52 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.217 -24.224 -17.634 32.357 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.007 4.007 3 N -0.338 5.338 4 C -0.009 4.009 5 C -0.224 4.224 6 C 0.118 3.882 7 C -0.230 4.230 8 C -0.078 4.078 9 C -0.178 4.178 10 C 0.049 3.951 11 N -0.362 5.362 12 C 0.273 3.727 13 O -0.465 6.465 14 C -0.030 4.030 15 H 0.126 0.874 16 N -0.347 5.347 17 C -0.120 4.120 18 C 0.002 3.998 19 C -0.580 4.580 20 H 0.073 0.927 21 C -0.197 4.197 22 N -0.570 5.570 23 Si 0.785 3.215 24 H -0.188 1.188 25 H -0.203 1.203 26 H -0.206 1.206 27 C -0.073 4.073 28 C -0.228 4.228 29 H 0.072 0.928 30 H 0.096 0.904 31 H 0.063 0.937 32 H 0.106 0.894 33 H 0.096 0.904 34 H 0.105 0.895 35 H 0.091 0.909 36 H 0.094 0.906 37 H 0.064 0.936 38 H 0.076 0.924 39 H 0.149 0.851 40 H 0.141 0.859 41 H 0.078 0.922 42 H 0.086 0.914 43 H 0.247 0.753 44 H 0.160 0.840 45 H 0.159 0.841 46 H 0.061 0.939 47 H 0.084 0.916 48 H 0.012 0.988 49 H 0.025 0.975 50 H 0.071 0.929 51 H 0.149 0.851 52 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 12.028 -23.887 -17.375 31.892 hybrid contribution 0.284 0.485 -0.423 0.703 sum 12.311 -23.402 -17.798 31.874 Atomic orbital electron populations 1.22186 0.96202 1.02610 1.01704 1.21521 0.94022 0.81687 1.03485 1.46872 1.70539 1.13705 1.02667 1.21516 0.96921 0.97749 0.84762 1.22162 0.96522 1.02188 1.01554 1.18022 0.92222 0.91412 0.86583 1.20802 1.09064 0.94463 0.98681 1.20948 0.96033 0.99208 0.91574 1.19468 1.09043 0.95753 0.93554 1.20028 0.86730 0.95019 0.93310 1.46252 1.15665 1.50773 1.23543 1.22351 0.91219 0.78239 0.80848 1.90630 1.36461 1.63921 1.55485 1.21621 0.94101 0.97104 0.90183 0.87363 1.58979 1.50054 1.22161 1.03552 1.21382 0.99097 0.93280 0.98218 1.18831 0.91349 0.93604 0.96020 1.21757 1.03385 1.06986 1.25837 0.92672 1.25911 0.95657 1.01724 0.96441 1.70109 1.08618 1.39752 1.38566 0.85477 0.78286 0.79225 0.78510 1.18805 1.20279 1.20646 1.20952 0.94832 0.93383 0.98168 1.20828 1.09727 1.01480 0.90767 0.92825 0.90414 0.93727 0.89387 0.90387 0.89525 0.90910 0.90596 0.93640 0.92435 0.85088 0.85905 0.92163 0.91362 0.75322 0.84036 0.84146 0.93894 0.91617 0.98827 0.97535 0.92940 0.85142 0.84621 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.60 10.24 71.98 0.74 -0.87 16 2 C 0.12 1.06 5.88 86.38 0.51 1.56 16 3 N -0.63 -8.08 2.61 -697.31 -1.82 -9.90 16 4 C 0.11 1.14 5.88 86.38 0.51 1.65 16 5 C -0.17 -1.50 10.24 71.98 0.74 -0.77 16 6 C 0.22 3.77 6.55 38.21 0.25 4.02 16 7 C -0.21 -3.78 9.21 22.40 0.21 -3.58 16 8 C -0.06 -1.16 9.69 22.25 0.22 -0.95 16 9 C -0.18 -3.56 5.25 -19.84 -0.10 -3.66 16 10 C 0.17 4.01 5.80 85.63 0.50 4.51 16 11 N -0.71 -18.22 5.55 -466.78 -2.59 -20.81 16 12 C 0.49 15.60 7.07 87.66 0.62 16.22 16 13 O -0.58 -21.99 16.25 -3.04 -0.05 -22.04 16 14 C 0.09 2.94 3.15 44.17 0.14 3.07 16 15 H 0.11 3.46 8.14 -2.39 -0.02 3.44 16 16 N -0.82 -28.53 8.44 -171.81 -1.45 -29.98 16 17 C -0.08 -3.36 4.78 30.60 0.15 -3.22 16 18 C 0.04 2.07 4.86 29.85 0.15 2.22 16 19 C -0.54 -31.17 9.11 25.60 0.23 -30.94 16 20 H 0.06 3.07 7.74 -2.91 -0.02 3.05 16 21 C 0.00 0.02 5.46 84.66 0.46 0.48 16 22 N -0.93 -57.28 13.28 21.45 0.28 -57.00 16 23 Si 0.96 44.92 29.54 68.60 2.03 46.95 16 24 H -0.26 -11.82 7.11 99.48 0.71 -11.11 16 25 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 26 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 27 C -0.05 -0.98 9.69 22.25 0.22 -0.76 16 28 C -0.21 -3.44 9.21 22.40 0.21 -3.24 16 29 H 0.05 0.54 8.14 -2.39 -0.02 0.52 16 30 H 0.08 0.52 8.14 -2.39 -0.02 0.50 16 31 H 0.04 0.58 8.14 -2.39 -0.02 0.56 16 32 H 0.09 0.54 8.07 -2.39 -0.02 0.53 16 33 H 0.08 0.68 6.20 -2.38 -0.01 0.67 16 34 H 0.09 0.64 8.07 -2.39 -0.02 0.62 16 35 H 0.07 0.80 6.20 -2.39 -0.01 0.79 16 36 H 0.08 0.51 8.14 -2.39 -0.02 0.49 16 37 H 0.04 0.55 8.14 -2.38 -0.02 0.53 16 38 H 0.06 0.50 8.14 -2.39 -0.02 0.48 16 39 H 0.13 2.06 6.14 -2.91 -0.02 2.04 16 40 H 0.12 2.36 8.06 -2.91 -0.02 2.33 16 41 H 0.06 1.52 8.08 -2.38 -0.02 1.50 16 42 H 0.07 1.60 8.08 -2.39 -0.02 1.58 16 43 H 0.41 9.41 8.46 -92.71 -0.78 8.63 16 44 H 0.35 10.37 9.06 -89.69 -0.81 9.55 16 45 H 0.34 12.30 8.58 -89.69 -0.77 11.53 16 46 H 0.04 1.85 8.14 -2.39 -0.02 1.83 16 47 H 0.07 2.53 8.14 -2.38 -0.02 2.51 16 48 H -0.01 -0.37 8.14 -2.39 -0.02 -0.39 16 49 H 0.01 0.36 7.75 -2.38 -0.02 0.34 16 50 H 0.26 15.12 8.31 -92.71 -0.77 14.35 16 51 H 0.13 2.03 8.06 -2.91 -0.02 2.01 16 52 H 0.14 1.81 6.14 -2.91 -0.02 1.79 16 Total: -1.00 -71.05 423.47 0.68 -70.37 By element: Atomic # 1 Polarization: 38.10 SS G_CDS: -1.44 Total: 36.66 kcal Atomic # 6 Polarization: -19.97 SS G_CDS: 5.72 Total: -14.25 kcal Atomic # 7 Polarization: -112.11 SS G_CDS: -5.57 Total: -117.69 kcal Atomic # 8 Polarization: -21.99 SS G_CDS: -0.05 Total: -22.04 kcal Atomic # 14 Polarization: 44.92 SS G_CDS: 2.03 Total: 46.95 kcal Total: -71.05 0.68 -70.37 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000827340468.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.039 kcal (2) G-P(sol) polarization free energy of solvation -71.054 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.015 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.683 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.371 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.332 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds