Wall clock time and date at job start Tue Mar 31 2020 18:13:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46501 * 109.46949 * 2 1 4 4 C 1.46495 * 120.00132 * 269.99699 * 3 2 1 5 5 C 1.52998 * 109.47446 * 270.00121 * 4 3 2 6 6 C 1.39676 * 119.99720 * 90.00476 * 3 2 1 7 7 C 1.38916 * 120.07242 * 179.97438 * 6 3 2 8 8 C 1.38099 * 119.92453 * 180.02562 * 7 6 3 9 9 C 1.38288 * 120.07504 * 0.02562 * 8 7 6 10 10 C 1.50695 * 119.92463 * 179.97438 * 9 8 7 11 11 N 1.46497 * 109.47378 * 89.99918 * 10 9 8 12 12 C 1.34781 * 120.00245 * 179.97438 * 11 10 9 13 13 O 1.21275 * 119.99676 * 0.02562 * 12 11 10 14 14 C 1.50703 * 119.99971 * 179.97438 * 12 11 10 15 15 H 1.09002 * 109.47083 * 320.00492 * 14 12 11 16 16 N 1.46898 * 109.47113 * 200.00293 * 14 12 11 17 17 C 1.53000 * 109.46801 * 80.00207 * 14 12 11 18 18 C 1.52997 * 109.47060 * 184.99876 * 17 14 12 19 19 C 1.50697 * 109.47466 * 180.02562 * 18 17 14 20 20 H 1.08001 * 119.99890 * 0.02562 * 19 18 17 21 21 C 1.37876 * 120.00428 * 179.97438 * 19 18 17 22 22 N 1.31519 * 119.99563 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 120.00432 * 179.97438 * 21 19 18 24 24 H 1.48499 * 109.46616 * 0.02562 * 23 21 19 25 25 H 1.48501 * 109.47104 * 119.99966 * 23 21 19 26 26 H 1.48489 * 109.47200 * 240.00246 * 23 21 19 27 27 C 1.38284 * 120.15011 * 0.27001 * 9 8 7 28 28 C 1.38110 * 120.07133 * 359.45305 * 27 9 8 29 29 H 1.09003 * 109.47348 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47207 * 300.00109 * 1 2 3 31 31 H 1.09006 * 109.47286 * 59.99945 * 1 2 3 32 32 H 1.09004 * 109.47386 * 240.00554 * 2 1 3 33 33 H 1.08996 * 109.47263 * 119.99926 * 2 1 3 34 34 H 1.09008 * 109.47188 * 30.00521 * 4 3 2 35 35 H 1.09003 * 109.47159 * 150.00153 * 4 3 2 36 36 H 1.09008 * 109.47434 * 179.97438 * 5 4 3 37 37 H 1.08995 * 109.47424 * 300.00080 * 5 4 3 38 38 H 1.09003 * 109.46915 * 59.99883 * 5 4 3 39 39 H 1.07995 * 120.03597 * 0.04093 * 7 6 3 40 40 H 1.07998 * 119.96211 * 179.97438 * 8 7 6 41 41 H 1.09004 * 109.47459 * 329.99811 * 10 9 8 42 42 H 1.09009 * 109.47360 * 209.99613 * 10 9 8 43 43 H 0.97000 * 120.00041 * 359.97438 * 11 10 9 44 44 H 1.00899 * 111.00057 * 300.00501 * 16 14 12 45 45 H 1.00902 * 110.99515 * 63.95638 * 16 14 12 46 46 H 1.09002 * 109.47398 * 305.00045 * 17 14 12 47 47 H 1.09001 * 109.47194 * 65.00225 * 17 14 12 48 48 H 1.09002 * 109.47153 * 300.00319 * 18 17 14 49 49 H 1.08998 * 109.47533 * 59.99948 * 18 17 14 50 50 H 0.97002 * 119.99731 * 180.02562 * 22 21 19 51 51 H 1.07998 * 119.96735 * 179.70769 * 27 9 8 52 52 H 1.08004 * 120.03764 * 180.27548 * 28 27 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0182 1.3812 0.0000 4 6 2.2625 2.0718 -1.2687 5 6 3.7074 1.8315 -1.7103 6 6 2.2511 2.0396 1.2097 7 6 2.7146 3.3491 1.2115 8 6 2.9443 3.9970 2.4093 9 6 2.7139 3.3434 3.6060 10 6 2.9663 4.0533 4.9110 11 7 1.7460 4.7443 5.3350 12 6 1.7356 5.4503 6.4831 13 8 2.7365 5.5140 7.1648 14 6 0.4805 6.1616 6.9189 15 1 -0.0026 6.6107 6.0511 16 7 0.8238 7.2121 7.8865 17 6 -0.4733 5.1590 7.5715 18 6 -1.7961 5.8537 7.9011 19 6 -2.7354 4.8664 8.5445 20 1 -2.4202 3.8456 8.7029 21 6 -3.9966 5.2664 8.9320 22 7 -4.3802 6.5097 8.7395 23 14 -5.1612 4.0425 9.7289 24 1 -4.4945 2.7195 9.8311 25 1 -5.5262 4.5187 11.0873 26 1 -6.3883 3.9164 8.9022 27 6 2.2583 2.0377 3.6078 28 6 2.0211 1.3859 2.4135 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 -0.3634 0.5139 -0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8899 34 1 1.5816 1.6878 -2.0284 35 1 2.0955 3.1411 -1.1383 36 1 3.8890 2.3450 -2.6546 37 1 4.3882 2.2156 -0.9507 38 1 3.8744 0.7622 -1.8407 39 1 2.8949 3.8601 0.2773 40 1 3.3051 5.0149 2.4114 41 1 3.7684 4.7798 4.7804 42 1 3.2546 3.3263 5.6704 43 1 0.9455 4.6937 4.7895 44 1 1.2734 6.8209 8.7007 45 1 1.4013 7.9214 7.4604 46 1 -0.6580 4.3330 6.8846 47 1 -0.0259 4.7758 8.4886 48 1 -1.6114 6.6796 8.5880 49 1 -2.2436 6.2369 6.9842 50 1 -5.2674 6.7912 9.0124 51 1 2.0839 1.5285 4.5441 52 1 1.6610 0.3677 2.4156 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000827340469.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:13:40 Heat of formation + Delta-G solvation = -24.424273 kcal Electronic energy + Delta-G solvation = -27973.568047 eV Core-core repulsion = 24165.032864 eV Total energy + Delta-G solvation = -3808.535182 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.22447 -39.52769 -37.45342 -35.21086 -34.55314 -32.93089 -32.75286 -31.46252 -30.81216 -30.04452 -28.90513 -26.68870 -25.34641 -24.46435 -23.40760 -22.30798 -22.29643 -20.58123 -20.30865 -19.70104 -17.91809 -17.09857 -16.55850 -16.28227 -15.99326 -15.44830 -15.26019 -15.16329 -14.65480 -14.58147 -14.37023 -14.29531 -13.95678 -13.82877 -13.62270 -13.34985 -13.31061 -12.86716 -12.65021 -12.52569 -12.45018 -12.27699 -12.14851 -11.96092 -11.58124 -11.50440 -11.45988 -11.37910 -10.89396 -10.88803 -10.63768 -10.48826 -10.21579 -9.95960 -9.74908 -9.32634 -9.10819 -8.96334 -8.91878 -8.31638 -8.16675 -7.53030 -5.90947 -3.92691 1.27101 1.29048 2.72246 2.88100 3.35695 3.36384 3.43151 3.47227 3.85894 4.40121 4.45017 4.52691 4.67319 4.69382 4.73494 4.79951 4.94270 4.96104 4.97933 5.00662 5.07686 5.21684 5.25744 5.26511 5.29335 5.40879 5.44622 5.45476 5.55148 5.57058 5.62256 5.73150 5.75497 5.84719 5.87561 5.91001 6.08001 6.19181 6.48681 6.54784 6.55450 6.64846 6.71705 6.96403 7.14375 7.21745 7.46129 7.71606 7.80414 7.86490 8.00510 8.17058 8.42327 8.52276 9.15651 9.70215 11.20025 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.010814 B = 0.002309 C = 0.002002 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2588.604276 B =12121.802460 C =13983.245579 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.119 3.881 3 N -0.628 5.628 4 C 0.118 3.882 5 C -0.172 4.172 6 C 0.223 3.777 7 C -0.200 4.200 8 C -0.052 4.052 9 C -0.165 4.165 10 C 0.167 3.833 11 N -0.726 5.726 12 C 0.482 3.518 13 O -0.557 6.557 14 C 0.078 3.922 15 H 0.097 0.903 16 N -0.807 5.807 17 C -0.095 4.095 18 C 0.031 3.969 19 C -0.520 4.520 20 H 0.052 0.948 21 C 0.056 3.944 22 N -0.893 5.893 23 Si 0.888 3.112 24 H -0.274 1.274 25 H -0.285 1.285 26 H -0.285 1.285 27 C -0.050 4.050 28 C -0.198 4.198 29 H 0.063 0.937 30 H 0.061 0.939 31 H 0.055 0.945 32 H 0.071 0.929 33 H 0.076 0.924 34 H 0.072 0.928 35 H 0.076 0.924 36 H 0.063 0.937 37 H 0.059 0.941 38 H 0.055 0.945 39 H 0.122 0.878 40 H 0.121 0.879 41 H 0.067 0.933 42 H 0.069 0.931 43 H 0.403 0.597 44 H 0.347 0.653 45 H 0.333 0.667 46 H 0.053 0.947 47 H 0.052 0.948 48 H 0.035 0.965 49 H 0.013 0.987 50 H 0.258 0.742 51 H 0.123 0.877 52 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.397 -10.694 -23.380 30.493 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.004 4.004 3 N -0.339 5.339 4 C -0.005 4.005 5 C -0.231 4.231 6 C 0.122 3.878 7 C -0.222 4.222 8 C -0.072 4.072 9 C -0.167 4.167 10 C 0.044 3.956 11 N -0.378 5.378 12 C 0.268 3.732 13 O -0.435 6.435 14 C -0.038 4.038 15 H 0.115 0.885 16 N -0.335 5.335 17 C -0.133 4.133 18 C -0.007 4.007 19 C -0.558 4.558 20 H 0.070 0.930 21 C -0.144 4.144 22 N -0.532 5.532 23 Si 0.717 3.283 24 H -0.199 1.199 25 H -0.211 1.211 26 H -0.211 1.211 27 C -0.069 4.069 28 C -0.221 4.221 29 H 0.082 0.918 30 H 0.080 0.920 31 H 0.074 0.926 32 H 0.090 0.910 33 H 0.094 0.906 34 H 0.090 0.910 35 H 0.094 0.906 36 H 0.082 0.918 37 H 0.078 0.922 38 H 0.074 0.926 39 H 0.139 0.861 40 H 0.139 0.861 41 H 0.086 0.914 42 H 0.087 0.913 43 H 0.238 0.762 44 H 0.161 0.839 45 H 0.145 0.855 46 H 0.072 0.928 47 H 0.071 0.929 48 H 0.053 0.947 49 H 0.031 0.969 50 H 0.068 0.932 51 H 0.141 0.859 52 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 16.153 -10.482 -22.974 29.976 hybrid contribution -0.092 -1.077 -0.146 1.091 sum 16.061 -11.559 -23.120 30.431 Atomic orbital electron populations 1.22239 0.96188 1.02082 1.02741 1.21386 0.94119 0.82394 1.02541 1.46656 1.71251 1.13157 1.02813 1.21379 0.96215 0.97835 0.85066 1.22232 0.97370 1.02073 1.01432 1.17857 0.92843 0.91402 0.85714 1.20639 1.09049 0.94110 0.98447 1.20809 0.96180 0.98888 0.91281 1.19618 1.07444 0.95349 0.94320 1.20030 0.87653 0.95395 0.92544 1.46316 1.14714 1.52252 1.24547 1.22742 0.91942 0.78636 0.79929 1.90636 1.35980 1.62882 1.54042 1.21827 0.91604 0.93424 0.96901 0.88524 1.59007 1.52073 1.13372 1.09043 1.21647 0.97120 0.95721 0.98836 1.19021 0.88529 0.95997 0.97104 1.21324 0.98605 0.96593 1.39318 0.92950 1.25001 0.98208 0.95099 0.96128 1.69991 1.19364 1.15999 1.47863 0.86597 0.81010 0.81589 0.79151 1.19871 1.21075 1.21136 1.20864 0.94807 0.93697 0.97558 1.20671 1.09553 1.00876 0.90967 0.91761 0.91963 0.92577 0.91036 0.90619 0.90951 0.90588 0.91816 0.92193 0.92621 0.86061 0.86124 0.91427 0.91305 0.76221 0.83873 0.85523 0.92839 0.92888 0.94666 0.96899 0.93197 0.85916 0.85966 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.06 10.24 37.15 0.38 -0.68 16 2 C 0.12 0.70 5.88 -4.04 -0.02 0.68 16 3 N -0.63 -4.57 2.61 -171.75 -0.45 -5.02 16 4 C 0.12 0.67 5.88 -4.05 -0.02 0.64 16 5 C -0.17 -0.88 10.24 37.16 0.38 -0.50 16 6 C 0.22 2.05 6.55 -83.79 -0.55 1.50 16 7 C -0.20 -1.82 9.21 -39.38 -0.36 -2.18 16 8 C -0.05 -0.50 9.69 -39.61 -0.38 -0.89 16 9 C -0.16 -1.73 5.25 -104.59 -0.55 -2.28 16 10 C 0.17 2.00 5.80 -5.20 -0.03 1.97 16 11 N -0.73 -9.62 5.55 -61.47 -0.34 -9.96 16 12 C 0.48 7.85 7.07 -10.98 -0.08 7.77 16 13 O -0.56 -10.59 16.25 5.56 0.09 -10.49 16 14 C 0.08 1.35 3.15 -68.86 -0.22 1.14 16 15 H 0.10 1.58 8.14 -51.93 -0.42 1.16 16 16 N -0.81 -14.02 8.44 -5.65 -0.05 -14.07 16 17 C -0.09 -1.96 4.78 -26.73 -0.13 -2.09 16 18 C 0.03 0.79 4.86 -27.89 -0.14 0.66 16 19 C -0.52 -14.88 9.11 -34.44 -0.31 -15.19 16 20 H 0.05 1.47 7.74 -52.49 -0.41 1.06 16 21 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 22 N -0.89 -27.18 13.29 55.43 0.74 -26.45 16 23 Si 0.89 21.95 29.54 -169.99 -5.02 16.93 16 24 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 25 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 26 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 27 C -0.05 -0.51 9.69 -39.61 -0.38 -0.90 16 28 C -0.20 -1.89 9.21 -39.38 -0.36 -2.25 16 29 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 32 H 0.07 0.33 8.07 -51.93 -0.42 -0.09 16 33 H 0.08 0.45 6.20 -51.93 -0.32 0.12 16 34 H 0.07 0.34 8.07 -51.92 -0.42 -0.08 16 35 H 0.08 0.43 6.20 -51.93 -0.32 0.11 16 36 H 0.06 0.25 8.14 -51.92 -0.42 -0.17 16 37 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 38 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 39 H 0.12 0.92 6.14 -52.49 -0.32 0.59 16 40 H 0.12 1.03 8.06 -52.49 -0.42 0.60 16 41 H 0.07 0.82 8.08 -51.93 -0.42 0.40 16 42 H 0.07 0.88 8.08 -51.92 -0.42 0.46 16 43 H 0.40 4.86 8.46 -40.82 -0.35 4.51 16 44 H 0.35 6.13 8.58 -39.29 -0.34 5.79 16 45 H 0.33 5.03 9.06 -39.29 -0.36 4.68 16 46 H 0.05 1.05 8.14 -51.93 -0.42 0.62 16 47 H 0.05 1.14 8.14 -51.93 -0.42 0.72 16 48 H 0.03 0.99 7.75 -51.93 -0.40 0.59 16 49 H 0.01 0.35 8.14 -51.93 -0.42 -0.08 16 50 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 51 H 0.12 1.19 8.06 -52.49 -0.42 0.76 16 52 H 0.12 1.01 6.14 -52.48 -0.32 0.69 16 LS Contribution 423.47 15.07 6.38 6.38 Total: -1.00 -33.32 423.47 -10.55 -43.87 By element: Atomic # 1 Polarization: 18.88 SS G_CDS: -9.02 Total: 9.86 kcal Atomic # 6 Polarization: -8.17 SS G_CDS: -2.88 Total: -11.04 kcal Atomic # 7 Polarization: -55.40 SS G_CDS: -0.10 Total: -55.50 kcal Atomic # 8 Polarization: -10.59 SS G_CDS: 0.09 Total: -10.49 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.93 kcal Total LS contribution 6.38 Total: 6.38 kcal Total: -33.32 -10.55 -43.87 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000827340469.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.445 kcal (2) G-P(sol) polarization free energy of solvation -33.321 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.876 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.869 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.424 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds