Wall clock time and date at job start Tue Mar 31 2020 18:13:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46501 * 109.46949 * 2 1 4 4 C 1.46495 * 120.00132 * 269.99699 * 3 2 1 5 5 C 1.52998 * 109.47446 * 270.00121 * 4 3 2 6 6 C 1.39676 * 119.99720 * 90.00476 * 3 2 1 7 7 C 1.38916 * 120.07242 * 179.97438 * 6 3 2 8 8 C 1.38099 * 119.92453 * 180.02562 * 7 6 3 9 9 C 1.38288 * 120.07504 * 0.02562 * 8 7 6 10 10 C 1.50695 * 119.92463 * 179.97438 * 9 8 7 11 11 N 1.46497 * 109.47378 * 89.99918 * 10 9 8 12 12 C 1.34781 * 120.00245 * 179.97438 * 11 10 9 13 13 O 1.21275 * 119.99676 * 0.02562 * 12 11 10 14 14 C 1.50703 * 119.99971 * 179.97438 * 12 11 10 15 15 H 1.09002 * 109.47083 * 320.00492 * 14 12 11 16 16 N 1.46898 * 109.47113 * 200.00293 * 14 12 11 17 17 C 1.53000 * 109.46801 * 80.00207 * 14 12 11 18 18 C 1.52997 * 109.47060 * 184.99876 * 17 14 12 19 19 C 1.50697 * 109.47466 * 180.02562 * 18 17 14 20 20 H 1.08001 * 119.99890 * 0.02562 * 19 18 17 21 21 C 1.37876 * 120.00428 * 179.97438 * 19 18 17 22 22 N 1.31519 * 119.99563 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 120.00432 * 179.97438 * 21 19 18 24 24 H 1.48499 * 109.46616 * 0.02562 * 23 21 19 25 25 H 1.48501 * 109.47104 * 119.99966 * 23 21 19 26 26 H 1.48489 * 109.47200 * 240.00246 * 23 21 19 27 27 C 1.38284 * 120.15011 * 0.27001 * 9 8 7 28 28 C 1.38110 * 120.07133 * 359.45305 * 27 9 8 29 29 H 1.09003 * 109.47348 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47207 * 300.00109 * 1 2 3 31 31 H 1.09006 * 109.47286 * 59.99945 * 1 2 3 32 32 H 1.09004 * 109.47386 * 240.00554 * 2 1 3 33 33 H 1.08996 * 109.47263 * 119.99926 * 2 1 3 34 34 H 1.09008 * 109.47188 * 30.00521 * 4 3 2 35 35 H 1.09003 * 109.47159 * 150.00153 * 4 3 2 36 36 H 1.09008 * 109.47434 * 179.97438 * 5 4 3 37 37 H 1.08995 * 109.47424 * 300.00080 * 5 4 3 38 38 H 1.09003 * 109.46915 * 59.99883 * 5 4 3 39 39 H 1.07995 * 120.03597 * 0.04093 * 7 6 3 40 40 H 1.07998 * 119.96211 * 179.97438 * 8 7 6 41 41 H 1.09004 * 109.47459 * 329.99811 * 10 9 8 42 42 H 1.09009 * 109.47360 * 209.99613 * 10 9 8 43 43 H 0.97000 * 120.00041 * 359.97438 * 11 10 9 44 44 H 1.00899 * 111.00057 * 300.00501 * 16 14 12 45 45 H 1.00902 * 110.99515 * 63.95638 * 16 14 12 46 46 H 1.09002 * 109.47398 * 305.00045 * 17 14 12 47 47 H 1.09001 * 109.47194 * 65.00225 * 17 14 12 48 48 H 1.09002 * 109.47153 * 300.00319 * 18 17 14 49 49 H 1.08998 * 109.47533 * 59.99948 * 18 17 14 50 50 H 0.97002 * 119.99731 * 180.02562 * 22 21 19 51 51 H 1.07998 * 119.96735 * 179.70769 * 27 9 8 52 52 H 1.08004 * 120.03764 * 180.27548 * 28 27 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0182 1.3812 0.0000 4 6 2.2625 2.0718 -1.2687 5 6 3.7074 1.8315 -1.7103 6 6 2.2511 2.0396 1.2097 7 6 2.7146 3.3491 1.2115 8 6 2.9443 3.9970 2.4093 9 6 2.7139 3.3434 3.6060 10 6 2.9663 4.0533 4.9110 11 7 1.7460 4.7443 5.3350 12 6 1.7356 5.4503 6.4831 13 8 2.7365 5.5140 7.1648 14 6 0.4805 6.1616 6.9189 15 1 -0.0026 6.6107 6.0511 16 7 0.8238 7.2121 7.8865 17 6 -0.4733 5.1590 7.5715 18 6 -1.7961 5.8537 7.9011 19 6 -2.7354 4.8664 8.5445 20 1 -2.4202 3.8456 8.7029 21 6 -3.9966 5.2664 8.9320 22 7 -4.3802 6.5097 8.7395 23 14 -5.1612 4.0425 9.7289 24 1 -4.4945 2.7195 9.8311 25 1 -5.5262 4.5187 11.0873 26 1 -6.3883 3.9164 8.9022 27 6 2.2583 2.0377 3.6078 28 6 2.0211 1.3859 2.4135 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 -0.3634 0.5139 -0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8899 34 1 1.5816 1.6878 -2.0284 35 1 2.0955 3.1411 -1.1383 36 1 3.8890 2.3450 -2.6546 37 1 4.3882 2.2156 -0.9507 38 1 3.8744 0.7622 -1.8407 39 1 2.8949 3.8601 0.2773 40 1 3.3051 5.0149 2.4114 41 1 3.7684 4.7798 4.7804 42 1 3.2546 3.3263 5.6704 43 1 0.9455 4.6937 4.7895 44 1 1.2734 6.8209 8.7007 45 1 1.4013 7.9214 7.4604 46 1 -0.6580 4.3330 6.8846 47 1 -0.0259 4.7758 8.4886 48 1 -1.6114 6.6796 8.5880 49 1 -2.2436 6.2369 6.9842 50 1 -5.2674 6.7912 9.0124 51 1 2.0839 1.5285 4.5441 52 1 1.6610 0.3677 2.4156 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000827340469.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:13:39 Heat of formation + Delta-G solvation = -45.351656 kcal Electronic energy + Delta-G solvation = -27974.475526 eV Core-core repulsion = 24165.032864 eV Total energy + Delta-G solvation = -3809.442662 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.15599 -40.58209 -38.15391 -36.79340 -35.66256 -34.79402 -33.42064 -32.24805 -31.90020 -31.48751 -29.65808 -28.15336 -26.61341 -24.98384 -24.93312 -23.10389 -22.94679 -22.27507 -21.21240 -20.86265 -18.82820 -18.39476 -18.00071 -17.37723 -17.16055 -16.81365 -16.43372 -16.05253 -15.98492 -15.56472 -15.41393 -15.12871 -14.92974 -14.76387 -14.62105 -14.27284 -14.18361 -13.99698 -13.81808 -13.54522 -13.39410 -13.32158 -13.26347 -12.93372 -12.81651 -12.65195 -12.50534 -12.24819 -12.21801 -12.09967 -11.86434 -11.75608 -11.64710 -11.50756 -11.24355 -11.00285 -10.72027 -10.48381 -10.10937 -9.82911 -9.60462 -8.18317 -8.12924 -6.23058 0.52739 0.54523 1.41589 1.42565 1.54016 1.56188 2.18803 2.29680 2.45429 3.01295 3.19839 3.61249 3.80018 3.85146 3.93230 3.96951 4.12097 4.14217 4.17285 4.25889 4.33674 4.36275 4.49499 4.50023 4.53664 4.57896 4.68267 4.68821 4.77040 4.80276 4.91892 4.96530 4.98093 4.99512 5.00501 5.18781 5.26927 5.29562 5.35597 5.41315 5.41519 5.46771 5.58545 5.77941 5.85962 5.93358 6.00087 6.12397 6.31818 6.40908 6.49079 6.56698 6.58811 6.95729 7.17371 7.44818 8.98413 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.010814 B = 0.002309 C = 0.002002 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2588.604276 B =12121.802460 C =13983.245579 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.115 3.885 3 N -0.628 5.628 4 C 0.114 3.886 5 C -0.166 4.166 6 C 0.221 3.779 7 C -0.206 4.206 8 C -0.054 4.054 9 C -0.176 4.176 10 C 0.172 3.828 11 N -0.711 5.711 12 C 0.488 3.512 13 O -0.584 6.584 14 C 0.086 3.914 15 H 0.109 0.891 16 N -0.819 5.819 17 C -0.081 4.081 18 C 0.039 3.961 19 C -0.541 4.541 20 H 0.055 0.945 21 C 0.000 4.000 22 N -0.930 5.930 23 Si 0.960 3.040 24 H -0.264 1.264 25 H -0.281 1.281 26 H -0.277 1.277 27 C -0.058 4.058 28 C -0.208 4.208 29 H 0.075 0.925 30 H 0.042 0.958 31 H 0.055 0.945 32 H 0.089 0.911 33 H 0.075 0.925 34 H 0.086 0.914 35 H 0.076 0.924 36 H 0.077 0.923 37 H 0.045 0.955 38 H 0.054 0.946 39 H 0.136 0.864 40 H 0.131 0.869 41 H 0.068 0.932 42 H 0.060 0.940 43 H 0.411 0.589 44 H 0.345 0.655 45 H 0.346 0.654 46 H 0.065 0.935 47 H 0.042 0.958 48 H 0.006 0.994 49 H -0.007 1.007 50 H 0.262 0.738 51 H 0.123 0.877 52 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.478 -12.172 -25.067 32.374 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.007 4.007 3 N -0.338 5.338 4 C -0.009 4.009 5 C -0.225 4.225 6 C 0.118 3.882 7 C -0.228 4.228 8 C -0.073 4.073 9 C -0.178 4.178 10 C 0.049 3.951 11 N -0.362 5.362 12 C 0.273 3.727 13 O -0.465 6.465 14 C -0.030 4.030 15 H 0.126 0.874 16 N -0.347 5.347 17 C -0.120 4.120 18 C 0.002 3.998 19 C -0.580 4.580 20 H 0.073 0.927 21 C -0.198 4.198 22 N -0.570 5.570 23 Si 0.785 3.215 24 H -0.188 1.188 25 H -0.207 1.207 26 H -0.203 1.203 27 C -0.078 4.078 28 C -0.230 4.230 29 H 0.094 0.906 30 H 0.061 0.939 31 H 0.074 0.926 32 H 0.107 0.893 33 H 0.093 0.907 34 H 0.104 0.896 35 H 0.094 0.906 36 H 0.095 0.905 37 H 0.065 0.935 38 H 0.074 0.926 39 H 0.154 0.846 40 H 0.148 0.852 41 H 0.086 0.914 42 H 0.078 0.922 43 H 0.247 0.753 44 H 0.159 0.841 45 H 0.160 0.840 46 H 0.084 0.916 47 H 0.061 0.939 48 H 0.025 0.975 49 H 0.012 0.988 50 H 0.071 0.929 51 H 0.141 0.859 52 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 16.237 -11.983 -24.718 31.909 hybrid contribution -0.112 -0.638 0.270 0.701 sum 16.124 -12.620 -24.448 31.890 Atomic orbital electron populations 1.22186 0.96269 1.02563 1.01701 1.21506 0.93966 0.81853 1.03398 1.46869 1.70520 1.13635 1.02752 1.21530 0.96909 0.97839 0.84617 1.22168 0.96537 1.02134 1.01618 1.18025 0.92241 0.91595 0.86380 1.20824 1.08892 0.94234 0.98856 1.20948 0.95857 0.99370 0.91166 1.19468 1.09016 0.95537 0.93801 1.20027 0.86830 0.95096 0.93129 1.46252 1.15604 1.50915 1.23470 1.22351 0.90996 0.78788 0.80521 1.90628 1.36715 1.63999 1.55150 1.21623 0.91638 0.92826 0.96921 0.87357 1.58981 1.52635 1.13856 1.09267 1.21383 0.95214 0.96372 0.99016 1.18830 0.90716 0.95049 0.95210 1.21757 0.99477 0.97185 1.39538 0.92672 1.25919 1.00136 0.97040 0.96682 1.70118 1.20032 1.17996 1.48876 0.85473 0.78656 0.79277 0.78067 1.18832 1.20651 1.20262 1.20950 0.95024 0.93786 0.97994 1.20804 1.09823 1.01421 0.90958 0.90577 0.93901 0.92597 0.89289 0.90662 0.89584 0.90593 0.90456 0.93539 0.92643 0.84638 0.85156 0.91376 0.92152 0.75324 0.84148 0.84035 0.91613 0.93899 0.97534 0.98817 0.92948 0.85891 0.85071 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.80 10.24 71.98 0.74 -1.06 16 2 C 0.12 1.15 5.88 86.38 0.51 1.66 16 3 N -0.63 -8.07 2.61 -697.30 -1.82 -9.89 16 4 C 0.11 1.04 5.88 86.38 0.51 1.55 16 5 C -0.17 -1.36 10.24 71.98 0.74 -0.62 16 6 C 0.22 3.76 6.55 38.21 0.25 4.01 16 7 C -0.21 -3.45 9.21 22.40 0.21 -3.24 16 8 C -0.05 -0.98 9.69 22.25 0.22 -0.77 16 9 C -0.18 -3.56 5.25 -19.84 -0.10 -3.66 16 10 C 0.17 4.01 5.80 85.63 0.50 4.51 16 11 N -0.71 -18.22 5.55 -466.78 -2.59 -20.81 16 12 C 0.49 15.60 7.07 87.66 0.62 16.22 16 13 O -0.58 -21.99 16.25 -3.01 -0.05 -22.03 16 14 C 0.09 2.94 3.15 44.17 0.14 3.07 16 15 H 0.11 3.46 8.14 -2.39 -0.02 3.44 16 16 N -0.82 -28.53 8.44 -171.80 -1.45 -29.98 16 17 C -0.08 -3.37 4.78 30.59 0.15 -3.22 16 18 C 0.04 2.07 4.86 29.85 0.15 2.22 16 19 C -0.54 -31.18 9.11 25.60 0.23 -30.95 16 20 H 0.06 3.07 7.74 -2.91 -0.02 3.05 16 21 C 0.00 -0.01 5.46 84.65 0.46 0.45 16 22 N -0.93 -57.27 13.29 21.45 0.28 -56.98 16 23 Si 0.96 44.95 29.54 68.60 2.03 46.98 16 24 H -0.26 -11.84 7.11 99.48 0.71 -11.13 16 25 H -0.28 -12.89 7.11 99.48 0.71 -12.19 16 26 H -0.28 -12.53 7.11 99.48 0.71 -11.83 16 27 C -0.06 -1.16 9.69 22.25 0.22 -0.94 16 28 C -0.21 -3.78 9.21 22.40 0.21 -3.57 16 29 H 0.08 0.62 8.14 -2.39 -0.02 0.60 16 30 H 0.04 0.63 8.14 -2.39 -0.02 0.61 16 31 H 0.05 0.59 8.14 -2.38 -0.02 0.57 16 32 H 0.09 0.60 8.07 -2.38 -0.02 0.58 16 33 H 0.08 0.77 6.20 -2.39 -0.01 0.76 16 34 H 0.09 0.58 8.07 -2.38 -0.02 0.56 16 35 H 0.08 0.71 6.20 -2.39 -0.01 0.69 16 36 H 0.08 0.43 8.14 -2.38 -0.02 0.41 16 37 H 0.05 0.52 8.14 -2.39 -0.02 0.50 16 38 H 0.05 0.46 8.14 -2.39 -0.02 0.44 16 39 H 0.14 1.81 6.14 -2.91 -0.02 1.79 16 40 H 0.13 2.04 8.06 -2.91 -0.02 2.01 16 41 H 0.07 1.60 8.08 -2.38 -0.02 1.58 16 42 H 0.06 1.53 8.08 -2.38 -0.02 1.51 16 43 H 0.41 9.41 8.46 -92.71 -0.78 8.62 16 44 H 0.34 12.30 8.58 -89.69 -0.77 11.53 16 45 H 0.35 10.36 9.06 -89.69 -0.81 9.55 16 46 H 0.07 2.53 8.14 -2.39 -0.02 2.51 16 47 H 0.04 1.85 8.14 -2.39 -0.02 1.83 16 48 H 0.01 0.36 7.75 -2.39 -0.02 0.34 16 49 H -0.01 -0.37 8.14 -2.39 -0.02 -0.39 16 50 H 0.26 15.12 8.31 -92.71 -0.77 14.35 16 51 H 0.12 2.35 8.06 -2.91 -0.02 2.33 16 52 H 0.13 2.05 6.14 -2.91 -0.02 2.03 16 Total: -1.00 -71.07 423.47 0.68 -70.39 By element: Atomic # 1 Polarization: 38.11 SS G_CDS: -1.44 Total: 36.66 kcal Atomic # 6 Polarization: -20.06 SS G_CDS: 5.72 Total: -14.34 kcal Atomic # 7 Polarization: -112.09 SS G_CDS: -5.57 Total: -117.66 kcal Atomic # 8 Polarization: -21.99 SS G_CDS: -0.05 Total: -22.03 kcal Atomic # 14 Polarization: 44.95 SS G_CDS: 2.03 Total: 46.98 kcal Total: -71.07 0.68 -70.39 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000827340469.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.036 kcal (2) G-P(sol) polarization free energy of solvation -71.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.035 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.684 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.388 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.352 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds