Wall clock time and date at job start Tue Mar 31 2020 18:33:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46493 * 109.47296 * 2 1 4 4 C 1.34770 * 120.00184 * 180.02562 * 3 2 1 5 5 O 1.21283 * 119.99720 * 359.97438 * 4 3 2 6 6 C 1.50697 * 120.00491 * 179.97438 * 4 3 2 7 7 C 1.52997 * 109.47601 * 204.99970 * 6 4 3 8 8 C 1.53007 * 109.47038 * 84.99613 * 6 4 3 9 9 N 1.46901 * 109.47186 * 325.00038 * 6 4 3 10 10 C 1.46897 * 111.00182 * 179.97438 * 9 6 4 11 11 C 1.50703 * 109.46910 * 179.97438 * 10 9 6 12 12 C 1.38286 * 119.92478 * 90.00241 * 11 10 9 13 13 C 1.38101 * 120.07469 * 180.02562 * 12 11 10 14 14 C 1.38911 * 119.92611 * 359.97438 * 13 12 11 15 15 N 1.39677 * 120.07774 * 179.97438 * 14 13 12 16 16 C 1.46508 * 119.99671 * 359.97438 * 15 14 13 17 17 C 1.46500 * 120.00191 * 180.02562 * 15 14 13 18 18 C 1.50706 * 109.46949 * 89.99699 * 17 15 14 19 19 H 1.07999 * 120.00196 * 0.02562 * 18 17 15 20 20 C 1.37879 * 119.99394 * 180.02562 * 18 17 15 21 21 N 1.31514 * 120.00338 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 119.99426 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.47361 * 359.97438 * 22 20 18 24 24 H 1.48500 * 109.47264 * 120.00115 * 22 20 18 25 25 H 1.48500 * 109.46969 * 239.99720 * 22 20 18 26 26 C 1.38915 * 119.84858 * 0.25685 * 14 13 12 27 27 C 1.38101 * 119.92539 * 359.48545 * 26 14 13 28 28 H 1.08998 * 109.47335 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47310 * 300.00260 * 1 2 3 30 30 H 1.09002 * 109.46876 * 60.00050 * 1 2 3 31 31 H 1.09001 * 109.46864 * 239.99110 * 2 1 3 32 32 H 1.09002 * 109.46876 * 119.99950 * 2 1 3 33 33 H 0.97007 * 119.99961 * 359.97438 * 3 2 1 34 34 H 1.09007 * 109.47385 * 180.02562 * 7 6 4 35 35 H 1.09002 * 109.47158 * 299.99819 * 7 6 4 36 36 H 1.08997 * 109.47127 * 59.99563 * 7 6 4 37 37 H 1.08998 * 109.47222 * 300.00496 * 8 6 4 38 38 H 1.09001 * 109.46619 * 60.00249 * 8 6 4 39 39 H 1.08998 * 109.46963 * 180.02562 * 8 6 4 40 40 H 1.00906 * 110.99849 * 56.04256 * 9 6 4 41 41 H 1.08997 * 109.46951 * 60.00392 * 10 9 6 42 42 H 1.08998 * 109.47048 * 299.99579 * 10 9 6 43 43 H 1.07999 * 119.96200 * 359.97438 * 12 11 10 44 44 H 1.08002 * 120.04127 * 179.97438 * 13 12 11 45 45 H 1.08991 * 109.46955 * 270.00182 * 16 15 14 46 46 H 1.08995 * 109.47080 * 30.00542 * 16 15 14 47 47 H 1.09001 * 109.46349 * 150.00155 * 16 15 14 48 48 H 1.09000 * 109.46609 * 329.99879 * 17 15 14 49 49 H 1.09000 * 109.47175 * 209.99673 * 17 15 14 50 50 H 0.96996 * 119.99730 * 180.02562 * 21 20 18 51 51 H 1.08002 * 120.03297 * 179.72644 * 26 14 13 52 52 H 1.08001 * 119.96366 * 180.25592 * 27 26 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 3.3434 1.6274 -0.0005 5 8 4.1315 0.7055 -0.0005 6 6 3.8459 3.0481 -0.0011 7 6 5.2482 3.0930 -0.6112 8 6 3.8978 3.5713 1.4358 9 7 2.9393 3.8878 -0.7954 10 6 3.3982 5.2831 -0.8180 11 6 2.4458 6.1119 -1.6408 12 6 1.3613 6.7206 -1.0359 13 6 0.4863 7.4803 -1.7871 14 6 0.6967 7.6333 -3.1516 15 7 -0.1866 8.4006 -3.9145 16 6 -1.3370 9.0448 -3.2756 17 6 0.0366 8.5604 -5.3535 18 6 -0.6745 7.4593 -6.0974 19 1 -1.2368 6.7153 -5.5527 20 6 -0.6071 7.4020 -7.4734 21 7 0.0772 8.3083 -8.1366 22 14 -1.4891 6.0377 -8.3954 23 1 -2.1828 5.1527 -7.4255 24 1 -2.4841 6.6310 -9.3244 25 1 -0.5008 5.2443 -9.1695 26 6 1.7844 7.0166 -3.7569 27 6 2.6586 6.2625 -2.9989 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.8934 -0.5140 -0.8899 32 1 1.8934 -0.5138 0.8900 33 1 1.3881 2.1185 -0.0004 34 1 5.6118 4.1207 -0.6112 35 1 5.9210 2.4700 -0.0218 36 1 5.2112 2.7203 -1.6348 37 1 2.8987 3.5394 1.8704 38 1 4.5705 2.9483 2.0252 39 1 4.2608 4.5991 1.4353 40 1 1.9929 3.8243 -0.4512 41 1 4.3942 5.3308 -1.2581 42 1 3.4317 5.6710 0.2001 43 1 1.1981 6.6009 0.0249 44 1 -0.3607 7.9551 -1.3142 45 1 -2.1914 8.3684 -3.2991 46 1 -1.0912 9.2840 -2.2410 47 1 -1.5841 9.9612 -3.8116 48 1 1.1050 8.5094 -5.5633 49 1 -0.3515 9.5264 -5.6764 50 1 0.1242 8.2681 -9.1046 51 1 1.9484 7.1299 -4.8184 52 1 3.5067 5.7862 -3.4681 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000835075592.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:33:17 Heat of formation + Delta-G solvation = -6.497720 kcal Electronic energy + Delta-G solvation = -28766.534969 eV Core-core repulsion = 24958.777140 eV Total energy + Delta-G solvation = -3807.757829 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.44603 -39.06368 -37.30494 -35.65092 -35.48004 -32.81068 -31.73268 -30.71525 -30.48053 -28.95102 -27.83628 -27.55195 -26.03745 -24.65653 -23.60549 -22.40795 -21.80827 -21.55573 -19.73397 -19.47363 -17.83005 -16.66162 -16.50752 -16.34627 -15.85750 -15.42402 -15.09242 -14.85300 -14.59969 -14.38318 -14.12659 -13.98024 -13.73406 -13.54045 -13.22208 -13.05497 -12.93693 -12.83113 -12.66956 -12.26641 -12.17100 -12.14040 -12.04688 -11.77024 -11.75563 -11.60878 -11.49093 -11.39160 -11.27446 -10.96204 -10.72626 -10.70951 -10.27633 -9.94648 -9.90678 -9.74952 -9.28185 -8.89864 -8.56395 -8.52272 -8.30922 -6.50597 -6.04367 -4.19091 2.06933 2.13509 2.48293 2.96500 3.24565 3.32915 3.37483 3.94254 4.11901 4.39700 4.44025 4.58333 4.65029 4.66858 4.82514 4.83281 5.06611 5.12232 5.19909 5.23263 5.31697 5.35918 5.49439 5.51365 5.52917 5.60822 5.64241 5.67321 5.71794 5.75642 5.80120 5.89560 5.97636 6.07923 6.10962 6.23339 6.25215 6.33946 6.39281 6.59280 6.73376 6.90936 6.98008 7.07172 7.18568 7.23722 7.32882 7.34207 7.56153 7.79374 8.03556 8.13182 8.22830 8.44368 8.89912 9.47928 10.93895 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.010930 B = 0.002741 C = 0.002489 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2561.062242 B =10213.858427 C =11247.986734 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.114 3.886 3 N -0.726 5.726 4 C 0.533 3.467 5 O -0.541 6.541 6 C 0.094 3.906 7 C -0.128 4.128 8 C -0.179 4.179 9 N -0.668 5.668 10 C 0.111 3.889 11 C -0.175 4.175 12 C -0.068 4.068 13 C -0.223 4.223 14 C 0.244 3.756 15 N -0.615 5.615 16 C 0.100 3.900 17 C 0.248 3.752 18 C -0.530 4.530 19 H 0.060 0.940 20 C 0.061 3.939 21 N -0.895 5.895 22 Si 0.896 3.104 23 H -0.273 1.273 24 H -0.283 1.283 25 H -0.282 1.282 26 C -0.188 4.188 27 C -0.049 4.049 28 H 0.073 0.927 29 H 0.060 0.940 30 H 0.066 0.934 31 H 0.067 0.933 32 H 0.065 0.935 33 H 0.400 0.600 34 H 0.065 0.935 35 H 0.067 0.933 36 H 0.068 0.932 37 H 0.058 0.942 38 H 0.067 0.933 39 H 0.075 0.925 40 H 0.337 0.663 41 H 0.080 0.920 42 H 0.036 0.964 43 H 0.104 0.896 44 H 0.112 0.888 45 H 0.041 0.959 46 H 0.053 0.947 47 H 0.061 0.939 48 H 0.036 0.964 49 H 0.030 0.970 50 H 0.263 0.737 51 H 0.132 0.868 52 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.672 -8.082 19.544 21.466 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.010 4.010 3 N -0.379 5.379 4 C 0.319 3.681 5 O -0.417 6.417 6 C -0.001 4.001 7 C -0.186 4.186 8 C -0.238 4.238 9 N -0.301 5.301 10 C -0.016 4.016 11 C -0.178 4.178 12 C -0.087 4.087 13 C -0.246 4.246 14 C 0.136 3.864 15 N -0.321 5.321 16 C -0.044 4.044 17 C 0.129 3.871 18 C -0.569 4.569 19 H 0.078 0.922 20 C -0.141 4.141 21 N -0.534 5.534 22 Si 0.723 3.277 23 H -0.197 1.197 24 H -0.210 1.210 25 H -0.208 1.208 26 C -0.211 4.211 27 C -0.068 4.068 28 H 0.092 0.908 29 H 0.080 0.920 30 H 0.085 0.915 31 H 0.086 0.914 32 H 0.083 0.917 33 H 0.235 0.765 34 H 0.084 0.916 35 H 0.086 0.914 36 H 0.087 0.913 37 H 0.077 0.923 38 H 0.086 0.914 39 H 0.094 0.906 40 H 0.156 0.844 41 H 0.098 0.902 42 H 0.054 0.946 43 H 0.122 0.878 44 H 0.130 0.870 45 H 0.059 0.941 46 H 0.072 0.928 47 H 0.080 0.920 48 H 0.054 0.946 49 H 0.048 0.952 50 H 0.073 0.927 51 H 0.149 0.851 52 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 4.422 -8.739 18.607 21.027 hybrid contribution -1.308 -0.089 0.154 1.320 sum 3.114 -8.828 18.761 20.967 Atomic orbital electron populations 1.22019 0.94330 1.03241 1.02830 1.21298 0.94374 0.83039 1.02256 1.46077 1.07345 1.08944 1.75523 1.20420 0.82085 0.90816 0.74807 1.90689 1.55466 1.45908 1.49642 1.21160 0.95806 0.89996 0.93098 1.21709 0.92691 1.02236 1.01923 1.22501 1.02709 1.02757 0.95831 1.60858 1.04588 1.09572 1.55129 1.20794 0.98101 0.85381 0.97342 1.19137 0.99329 1.04936 0.94414 1.20490 0.93853 0.96423 0.97964 1.20513 1.03355 1.07896 0.92819 1.17961 0.89123 0.89242 0.90067 1.47118 1.24903 1.50831 1.09201 1.21461 0.88940 0.97123 0.96879 1.19316 0.97527 0.96932 0.73354 1.21601 1.32007 1.11913 0.91408 0.92223 1.24960 0.95405 0.96183 0.97527 1.69934 1.41072 1.34512 1.07881 0.86472 0.79506 0.81948 0.79734 1.19736 1.20955 1.20803 1.20915 0.96327 1.02849 1.00962 1.20653 0.97789 0.95723 0.92673 0.90825 0.92046 0.91527 0.91431 0.91706 0.76455 0.91576 0.91354 0.91321 0.92290 0.91389 0.90621 0.84387 0.90202 0.94556 0.87770 0.86970 0.94089 0.92835 0.92040 0.94610 0.95207 0.92683 0.85058 0.86979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.06 10.03 37.16 0.37 -0.68 16 2 C 0.11 0.99 6.39 -4.04 -0.03 0.96 16 3 N -0.73 -6.91 5.45 -60.30 -0.33 -7.24 16 4 C 0.53 6.34 6.71 -10.99 -0.07 6.27 16 5 O -0.54 -8.27 16.10 5.56 0.09 -8.18 16 6 C 0.09 0.94 0.91 -132.75 -0.12 0.82 16 7 C -0.13 -1.34 7.77 37.16 0.29 -1.05 16 8 C -0.18 -1.44 8.21 37.16 0.31 -1.13 16 9 N -0.67 -7.04 5.99 -102.40 -0.61 -7.65 16 10 C 0.11 1.22 5.02 -4.98 -0.02 1.19 16 11 C -0.18 -2.46 5.40 -104.58 -0.56 -3.02 16 12 C -0.07 -0.95 9.69 -39.61 -0.38 -1.33 16 13 C -0.22 -3.62 9.21 -39.38 -0.36 -3.99 16 14 C 0.24 4.74 6.55 -83.78 -0.55 4.19 16 15 N -0.62 -12.82 2.99 -180.99 -0.54 -13.36 16 16 C 0.10 1.70 10.23 59.85 0.61 2.31 16 17 C 0.25 6.13 4.95 -5.19 -0.03 6.11 16 18 C -0.53 -14.35 9.39 -34.44 -0.32 -14.68 16 19 H 0.06 1.66 7.81 -52.49 -0.41 1.25 16 20 C 0.06 1.68 5.46 -17.82 -0.10 1.59 16 21 N -0.89 -25.48 13.29 55.43 0.74 -24.75 16 22 Si 0.90 21.24 29.54 -169.99 -5.02 16.22 16 23 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 24 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 25 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 26 C -0.19 -3.69 9.20 -39.38 -0.36 -4.05 16 27 C -0.05 -0.80 9.69 -39.61 -0.38 -1.19 16 28 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 31 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.40 3.11 6.75 -40.82 -0.28 2.83 16 34 H 0.07 0.60 6.41 -51.93 -0.33 0.27 16 35 H 0.07 0.72 7.87 -51.93 -0.41 0.31 16 36 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 37 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 38 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.07 0.56 6.40 -51.93 -0.33 0.23 16 40 H 0.34 3.22 7.02 -39.29 -0.28 2.94 16 41 H 0.08 0.87 6.25 -51.93 -0.32 0.55 16 42 H 0.04 0.35 6.24 -51.93 -0.32 0.02 16 43 H 0.10 1.16 8.06 -52.49 -0.42 0.74 16 44 H 0.11 1.65 6.14 -52.49 -0.32 1.32 16 45 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 46 H 0.05 0.76 6.20 -51.93 -0.32 0.44 16 47 H 0.06 1.00 7.89 -51.93 -0.41 0.59 16 48 H 0.04 0.93 6.21 -51.93 -0.32 0.61 16 49 H 0.03 0.77 7.89 -51.93 -0.41 0.36 16 50 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 51 H 0.13 2.88 6.15 -52.49 -0.32 2.56 16 52 H 0.11 1.70 8.06 -52.49 -0.42 1.28 16 LS Contribution 412.43 15.07 6.22 6.22 Total: -1.00 -31.02 412.43 -9.76 -40.78 By element: Atomic # 1 Polarization: 14.24 SS G_CDS: -8.58 Total: 5.66 kcal Atomic # 6 Polarization: -5.97 SS G_CDS: -1.72 Total: -7.69 kcal Atomic # 7 Polarization: -52.25 SS G_CDS: -0.75 Total: -53.00 kcal Atomic # 8 Polarization: -8.27 SS G_CDS: 0.09 Total: -8.18 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Total LS contribution 6.22 Total: 6.22 kcal Total: -31.02 -9.76 -40.78 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000835075592.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.278 kcal (2) G-P(sol) polarization free energy of solvation -31.015 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.263 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.761 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.776 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.498 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds