Wall clock time and date at job start Tue Mar 31 2020 18:33:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46493 * 109.47296 * 2 1 4 4 C 1.34770 * 120.00184 * 180.02562 * 3 2 1 5 5 O 1.21283 * 119.99720 * 359.97438 * 4 3 2 6 6 C 1.50697 * 120.00491 * 179.97438 * 4 3 2 7 7 C 1.52997 * 109.47601 * 204.99970 * 6 4 3 8 8 C 1.53007 * 109.47038 * 84.99613 * 6 4 3 9 9 N 1.46901 * 109.47186 * 325.00038 * 6 4 3 10 10 C 1.46897 * 111.00182 * 179.97438 * 9 6 4 11 11 C 1.50703 * 109.46910 * 179.97438 * 10 9 6 12 12 C 1.38286 * 119.92478 * 90.00241 * 11 10 9 13 13 C 1.38101 * 120.07469 * 180.02562 * 12 11 10 14 14 C 1.38911 * 119.92611 * 359.97438 * 13 12 11 15 15 N 1.39677 * 120.07774 * 179.97438 * 14 13 12 16 16 C 1.46508 * 119.99671 * 359.97438 * 15 14 13 17 17 C 1.46500 * 120.00191 * 180.02562 * 15 14 13 18 18 C 1.50706 * 109.46949 * 89.99699 * 17 15 14 19 19 H 1.07999 * 120.00196 * 0.02562 * 18 17 15 20 20 C 1.37879 * 119.99394 * 180.02562 * 18 17 15 21 21 N 1.31514 * 120.00338 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 119.99426 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.47361 * 359.97438 * 22 20 18 24 24 H 1.48500 * 109.47264 * 120.00115 * 22 20 18 25 25 H 1.48500 * 109.46969 * 239.99720 * 22 20 18 26 26 C 1.38915 * 119.84858 * 0.25685 * 14 13 12 27 27 C 1.38101 * 119.92539 * 359.48545 * 26 14 13 28 28 H 1.08998 * 109.47335 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47310 * 300.00260 * 1 2 3 30 30 H 1.09002 * 109.46876 * 60.00050 * 1 2 3 31 31 H 1.09001 * 109.46864 * 239.99110 * 2 1 3 32 32 H 1.09002 * 109.46876 * 119.99950 * 2 1 3 33 33 H 0.97007 * 119.99961 * 359.97438 * 3 2 1 34 34 H 1.09007 * 109.47385 * 180.02562 * 7 6 4 35 35 H 1.09002 * 109.47158 * 299.99819 * 7 6 4 36 36 H 1.08997 * 109.47127 * 59.99563 * 7 6 4 37 37 H 1.08998 * 109.47222 * 300.00496 * 8 6 4 38 38 H 1.09001 * 109.46619 * 60.00249 * 8 6 4 39 39 H 1.08998 * 109.46963 * 180.02562 * 8 6 4 40 40 H 1.00906 * 110.99849 * 56.04256 * 9 6 4 41 41 H 1.08997 * 109.46951 * 60.00392 * 10 9 6 42 42 H 1.08998 * 109.47048 * 299.99579 * 10 9 6 43 43 H 1.07999 * 119.96200 * 359.97438 * 12 11 10 44 44 H 1.08002 * 120.04127 * 179.97438 * 13 12 11 45 45 H 1.08991 * 109.46955 * 270.00182 * 16 15 14 46 46 H 1.08995 * 109.47080 * 30.00542 * 16 15 14 47 47 H 1.09001 * 109.46349 * 150.00155 * 16 15 14 48 48 H 1.09000 * 109.46609 * 329.99879 * 17 15 14 49 49 H 1.09000 * 109.47175 * 209.99673 * 17 15 14 50 50 H 0.96996 * 119.99730 * 180.02562 * 21 20 18 51 51 H 1.08002 * 120.03297 * 179.72644 * 26 14 13 52 52 H 1.08001 * 119.96366 * 180.25592 * 27 26 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 3.3434 1.6274 -0.0005 5 8 4.1315 0.7055 -0.0005 6 6 3.8459 3.0481 -0.0011 7 6 5.2482 3.0930 -0.6112 8 6 3.8978 3.5713 1.4358 9 7 2.9393 3.8878 -0.7954 10 6 3.3982 5.2831 -0.8180 11 6 2.4458 6.1119 -1.6408 12 6 1.3613 6.7206 -1.0359 13 6 0.4863 7.4803 -1.7871 14 6 0.6967 7.6333 -3.1516 15 7 -0.1866 8.4006 -3.9145 16 6 -1.3370 9.0448 -3.2756 17 6 0.0366 8.5604 -5.3535 18 6 -0.6745 7.4593 -6.0974 19 1 -1.2368 6.7153 -5.5527 20 6 -0.6071 7.4020 -7.4734 21 7 0.0772 8.3083 -8.1366 22 14 -1.4891 6.0377 -8.3954 23 1 -2.1828 5.1527 -7.4255 24 1 -2.4841 6.6310 -9.3244 25 1 -0.5008 5.2443 -9.1695 26 6 1.7844 7.0166 -3.7569 27 6 2.6586 6.2625 -2.9989 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.8934 -0.5140 -0.8899 32 1 1.8934 -0.5138 0.8900 33 1 1.3881 2.1185 -0.0004 34 1 5.6118 4.1207 -0.6112 35 1 5.9210 2.4700 -0.0218 36 1 5.2112 2.7203 -1.6348 37 1 2.8987 3.5394 1.8704 38 1 4.5705 2.9483 2.0252 39 1 4.2608 4.5991 1.4353 40 1 1.9929 3.8243 -0.4512 41 1 4.3942 5.3308 -1.2581 42 1 3.4317 5.6710 0.2001 43 1 1.1981 6.6009 0.0249 44 1 -0.3607 7.9551 -1.3142 45 1 -2.1914 8.3684 -3.2991 46 1 -1.0912 9.2840 -2.2410 47 1 -1.5841 9.9612 -3.8116 48 1 1.1050 8.5094 -5.5633 49 1 -0.3515 9.5264 -5.6764 50 1 0.1242 8.2681 -9.1046 51 1 1.9484 7.1299 -4.8184 52 1 3.5067 5.7862 -3.4681 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000835075592.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:33:16 Heat of formation + Delta-G solvation = -26.340380 kcal Electronic energy + Delta-G solvation = -28767.395411 eV Core-core repulsion = 24958.777140 eV Total energy + Delta-G solvation = -3808.618271 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.33421 -40.37030 -38.32643 -36.96112 -36.36324 -34.78653 -32.83116 -31.84458 -31.39816 -30.14400 -29.54427 -28.26856 -27.22021 -26.03002 -24.78426 -23.55540 -22.95560 -22.76762 -21.02720 -20.35859 -18.74603 -18.64374 -17.95802 -17.26988 -16.89900 -16.65778 -16.31573 -15.93397 -15.64256 -15.57847 -15.30784 -15.21639 -14.84795 -14.67209 -14.45538 -14.27882 -14.00797 -13.93993 -13.63306 -13.37685 -13.18942 -13.17528 -13.10070 -13.00691 -12.79226 -12.70456 -12.63686 -12.54840 -12.48391 -12.37473 -12.25716 -12.14187 -11.79523 -11.72377 -11.36433 -10.84250 -10.64444 -10.37223 -10.11556 -9.62065 -9.37094 -8.35893 -7.78259 -6.37194 0.76247 0.86442 1.35359 1.37516 1.49187 1.56859 2.19944 2.34261 2.65737 2.96682 3.06226 3.39723 3.68013 3.90758 3.98123 4.10545 4.16256 4.20215 4.22240 4.27183 4.45035 4.47995 4.49728 4.61112 4.67700 4.71782 4.76362 4.79196 4.88114 4.88694 4.90953 4.96530 4.97266 5.04028 5.05415 5.13465 5.20694 5.21624 5.25510 5.28799 5.37371 5.46061 5.61700 5.69402 5.72644 5.91254 6.01222 6.07807 6.26392 6.34030 6.51768 6.55668 6.84000 6.97103 7.19108 7.34801 8.83239 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.010930 B = 0.002741 C = 0.002489 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2561.062242 B =10213.858427 C =11247.986734 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.110 3.890 3 N -0.716 5.716 4 C 0.526 3.474 5 O -0.583 6.583 6 C 0.101 3.899 7 C -0.128 4.128 8 C -0.174 4.174 9 N -0.678 5.678 10 C 0.116 3.884 11 C -0.157 4.157 12 C -0.056 4.056 13 C -0.217 4.217 14 C 0.213 3.787 15 N -0.633 5.633 16 C 0.100 3.900 17 C 0.266 3.734 18 C -0.539 4.539 19 H 0.048 0.952 20 C 0.012 3.988 21 N -0.927 5.927 22 Si 0.960 3.040 23 H -0.270 1.270 24 H -0.274 1.274 25 H -0.279 1.279 26 C -0.220 4.220 27 C -0.056 4.056 28 H 0.084 0.916 29 H 0.074 0.926 30 H 0.061 0.939 31 H 0.050 0.950 32 H 0.063 0.937 33 H 0.411 0.589 34 H 0.082 0.918 35 H 0.063 0.937 36 H 0.046 0.954 37 H 0.073 0.927 38 H 0.064 0.936 39 H 0.089 0.911 40 H 0.345 0.655 41 H 0.080 0.920 42 H 0.066 0.934 43 H 0.150 0.850 44 H 0.134 0.866 45 H 0.039 0.961 46 H 0.086 0.914 47 H 0.059 0.941 48 H 0.010 0.990 49 H 0.009 0.991 50 H 0.267 0.733 51 H 0.089 0.911 52 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.744 -8.749 22.720 24.501 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.013 4.013 3 N -0.369 5.369 4 C 0.312 3.688 5 O -0.462 6.462 6 C 0.007 3.993 7 C -0.186 4.186 8 C -0.233 4.233 9 N -0.312 5.312 10 C -0.011 4.011 11 C -0.160 4.160 12 C -0.075 4.075 13 C -0.239 4.239 14 C 0.108 3.892 15 N -0.340 5.340 16 C -0.043 4.043 17 C 0.144 3.856 18 C -0.578 4.578 19 H 0.067 0.933 20 C -0.187 4.187 21 N -0.567 5.567 22 Si 0.785 3.215 23 H -0.194 1.194 24 H -0.199 1.199 25 H -0.205 1.205 26 C -0.242 4.242 27 C -0.075 4.075 28 H 0.103 0.897 29 H 0.093 0.907 30 H 0.080 0.920 31 H 0.068 0.932 32 H 0.082 0.918 33 H 0.248 0.752 34 H 0.101 0.899 35 H 0.082 0.918 36 H 0.065 0.935 37 H 0.092 0.908 38 H 0.083 0.917 39 H 0.108 0.892 40 H 0.165 0.835 41 H 0.099 0.901 42 H 0.084 0.916 43 H 0.167 0.833 44 H 0.151 0.849 45 H 0.057 0.943 46 H 0.105 0.895 47 H 0.078 0.922 48 H 0.028 0.972 49 H 0.027 0.973 50 H 0.076 0.924 51 H 0.108 0.892 52 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 3.466 -9.401 21.825 24.015 hybrid contribution -0.937 0.054 -0.734 1.192 sum 2.529 -9.347 21.091 23.207 Atomic orbital electron populations 1.21968 0.92192 1.04170 1.03197 1.21370 0.96063 0.82510 1.01373 1.46078 1.06910 1.09712 1.74170 1.20830 0.82465 0.91261 0.74215 1.90670 1.56580 1.47212 1.51764 1.21068 0.95010 0.88797 0.94452 1.21709 0.93300 1.03014 1.00579 1.22469 1.03683 1.03221 0.93902 1.60726 1.05182 1.09351 1.55987 1.20775 0.97064 0.85077 0.98203 1.19466 0.99431 1.03786 0.93322 1.20951 0.92359 0.94326 0.99887 1.20805 1.04268 1.07655 0.91208 1.18249 0.89193 0.90208 0.91551 1.46960 1.26745 1.52632 1.07710 1.21591 0.87689 0.96676 0.98349 1.18781 0.95400 0.95113 0.76278 1.21806 1.31857 1.12185 0.91937 0.93324 1.25771 0.96115 0.98402 0.98427 1.70038 1.42262 1.36145 1.08241 0.85474 0.78478 0.79112 0.78423 1.19447 1.19899 1.20454 1.20773 0.98463 1.05516 0.99483 1.20787 0.97400 0.95281 0.94021 0.89710 0.90734 0.91957 0.93164 0.91841 0.75234 0.89906 0.91764 0.93490 0.90834 0.91701 0.89233 0.83457 0.90124 0.91585 0.83277 0.84867 0.94274 0.89530 0.92214 0.97242 0.97268 0.92426 0.89230 0.86549 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.67 10.03 71.98 0.72 -0.94 16 2 C 0.11 1.80 6.39 86.38 0.55 2.35 16 3 N -0.72 -12.36 5.45 -463.07 -2.53 -14.88 16 4 C 0.53 11.82 6.71 87.66 0.59 12.41 16 5 O -0.58 -17.77 16.10 -3.04 -0.05 -17.82 16 6 C 0.10 1.78 0.91 2.78 0.00 1.78 16 7 C -0.13 -2.50 7.77 71.98 0.56 -1.94 16 8 C -0.17 -2.13 8.21 71.98 0.59 -1.54 16 9 N -0.68 -12.10 5.99 -477.88 -2.86 -14.97 16 10 C 0.12 2.07 5.02 85.56 0.43 2.50 16 11 C -0.16 -3.92 5.40 -19.84 -0.11 -4.03 16 12 C -0.06 -1.32 9.69 22.25 0.22 -1.10 16 13 C -0.22 -6.43 9.21 22.40 0.21 -6.23 16 14 C 0.21 8.31 6.55 38.21 0.25 8.56 16 15 N -0.63 -27.08 2.99 -726.54 -2.17 -29.25 16 16 C 0.10 3.34 10.23 127.77 1.31 4.65 16 17 C 0.27 13.93 4.95 85.63 0.42 14.35 16 18 C -0.54 -30.36 9.39 25.60 0.24 -30.12 16 19 H 0.05 2.78 7.81 -2.91 -0.02 2.76 16 20 C 0.01 0.67 5.46 84.66 0.46 1.14 16 21 N -0.93 -54.63 13.29 21.45 0.28 -54.35 16 22 Si 0.96 44.36 29.54 68.60 2.03 46.38 16 23 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 24 H -0.27 -12.14 7.11 99.48 0.71 -11.44 16 25 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 26 C -0.22 -8.99 9.20 22.40 0.21 -8.78 16 27 C -0.06 -1.81 9.69 22.25 0.22 -1.60 16 28 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 29 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 30 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 31 H 0.05 0.99 8.14 -2.39 -0.02 0.98 16 32 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 33 H 0.41 5.23 6.75 -92.70 -0.63 4.60 16 34 H 0.08 1.30 6.41 -2.38 -0.02 1.28 16 35 H 0.06 1.30 7.87 -2.39 -0.02 1.28 16 36 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 37 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 38 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 39 H 0.09 0.88 6.40 -2.39 -0.02 0.86 16 40 H 0.35 5.18 7.02 -89.69 -0.63 4.55 16 41 H 0.08 1.48 6.25 -2.39 -0.01 1.47 16 42 H 0.07 0.85 6.24 -2.39 -0.01 0.84 16 43 H 0.15 2.27 8.06 -2.91 -0.02 2.24 16 44 H 0.13 3.36 6.14 -2.91 -0.02 3.34 16 45 H 0.04 1.30 8.14 -2.39 -0.02 1.28 16 46 H 0.09 2.27 6.20 -2.39 -0.01 2.25 16 47 H 0.06 1.97 7.89 -2.39 -0.02 1.95 16 48 H 0.01 0.55 6.21 -2.39 -0.01 0.53 16 49 H 0.01 0.51 7.89 -2.39 -0.02 0.49 16 50 H 0.27 14.76 8.31 -92.71 -0.77 13.99 16 51 H 0.09 4.34 6.15 -2.91 -0.02 4.32 16 52 H 0.12 3.58 8.06 -2.91 -0.02 3.55 16 Total: -1.00 -71.34 412.43 1.23 -70.11 By element: Atomic # 1 Polarization: 23.66 SS G_CDS: -0.33 Total: 23.33 kcal Atomic # 6 Polarization: -15.42 SS G_CDS: 6.87 Total: -8.55 kcal Atomic # 7 Polarization: -106.17 SS G_CDS: -7.28 Total: -113.44 kcal Atomic # 8 Polarization: -17.77 SS G_CDS: -0.05 Total: -17.82 kcal Atomic # 14 Polarization: 44.36 SS G_CDS: 2.03 Total: 46.38 kcal Total: -71.34 1.23 -70.11 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000835075592.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.769 kcal (2) G-P(sol) polarization free energy of solvation -71.344 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.575 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.235 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.109 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.340 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds