Wall clock time and date at job start Tue Mar 31 2020 17:55:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52997 * 109.47301 * 2 1 4 4 N 1.46501 * 109.46612 * 119.99944 * 2 1 3 5 5 C 1.34782 * 119.99606 * 154.99708 * 4 2 1 6 6 O 1.21285 * 120.00083 * 0.02562 * 5 4 2 7 7 C 1.50697 * 119.99889 * 179.97438 * 5 4 2 8 8 H 1.09002 * 109.47149 * 60.00753 * 7 5 4 9 9 C 1.52999 * 109.47371 * 300.00373 * 7 5 4 10 10 N 1.46906 * 109.47129 * 180.02562 * 7 5 4 11 11 C 1.46899 * 111.00049 * 205.00238 * 10 7 5 12 12 C 1.50699 * 109.47104 * 180.02562 * 11 10 7 13 13 C 1.38286 * 119.92533 * 90.00165 * 12 11 10 14 14 C 1.38104 * 120.07376 * 180.25715 * 13 12 11 15 15 C 1.38918 * 119.92017 * 359.44392 * 14 13 12 16 16 N 1.39676 * 120.07049 * 180.30184 * 15 14 13 17 17 C 1.46502 * 119.99924 * 180.25823 * 16 15 14 18 18 C 1.46500 * 120.00213 * 0.25045 * 16 15 14 19 19 C 1.50692 * 109.47029 * 90.00163 * 18 16 15 20 20 H 1.07998 * 120.00179 * 0.02562 * 19 18 16 21 21 C 1.37881 * 120.00178 * 180.02562 * 19 18 16 22 22 N 1.31521 * 119.99945 * 359.97438 * 21 19 18 23 23 Si 1.86805 * 120.00333 * 180.02562 * 21 19 18 24 24 H 1.48504 * 109.46906 * 89.99568 * 23 21 19 25 25 H 1.48497 * 109.46839 * 209.99888 * 23 21 19 26 26 H 1.48495 * 109.46807 * 329.99870 * 23 21 19 27 27 C 1.38905 * 119.85194 * 0.55157 * 15 14 13 28 28 C 1.38099 * 119.92845 * 359.72525 * 27 15 14 29 29 H 1.09002 * 109.47224 * 300.00252 * 1 2 3 30 30 H 1.09002 * 109.46766 * 59.99913 * 1 2 3 31 31 H 1.08998 * 109.47248 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.46709 * 239.99788 * 2 1 3 33 33 H 1.09002 * 109.47282 * 299.99772 * 3 2 1 34 34 H 1.09002 * 109.47187 * 59.99726 * 3 2 1 35 35 H 1.08999 * 109.47103 * 179.97438 * 3 2 1 36 36 H 0.96996 * 120.00703 * 334.99747 * 4 2 1 37 37 H 1.09001 * 109.46887 * 59.99657 * 9 7 5 38 38 H 1.08993 * 109.47209 * 179.97438 * 9 7 5 39 39 H 1.09002 * 109.47295 * 300.00291 * 9 7 5 40 40 H 1.00897 * 110.99569 * 328.95467 * 10 7 5 41 41 H 1.09006 * 109.47061 * 59.99820 * 11 10 7 42 42 H 1.09004 * 109.46817 * 300.00324 * 11 10 7 43 43 H 1.08002 * 119.96057 * 359.97173 * 13 12 11 44 44 H 1.07998 * 120.04042 * 179.72222 * 14 13 12 45 45 H 1.08990 * 109.47426 * 89.99418 * 17 16 15 46 46 H 1.09005 * 109.46823 * 210.00050 * 17 16 15 47 47 H 1.09005 * 109.46514 * 329.99017 * 17 16 15 48 48 H 1.09003 * 109.47215 * 210.00592 * 18 16 15 49 49 H 1.09002 * 109.46876 * 330.00328 * 18 16 15 50 50 H 0.96995 * 119.99824 * 180.02562 * 22 21 19 51 51 H 1.08006 * 120.03717 * 179.70113 * 27 15 14 52 52 H 1.07997 * 119.96598 * 179.97438 * 28 27 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 3.2402 -1.2593 1.1944 6 8 3.9358 -1.1988 0.2027 7 6 3.7427 -1.9692 2.4251 8 1 3.0702 -2.7912 2.6704 9 6 3.7944 -0.9857 3.5959 10 7 5.0896 -2.4974 2.1700 11 6 5.3782 -3.6456 3.0397 12 6 6.7653 -4.1588 2.7504 13 6 7.8472 -3.6531 3.4475 14 6 9.1203 -4.1174 3.1812 15 6 9.3119 -5.1017 2.2198 16 7 10.5974 -5.5780 1.9524 17 6 10.7984 -6.6121 0.9343 18 6 11.7449 -5.0434 2.6899 19 6 11.9713 -5.8663 3.9319 20 1 11.3254 -6.7040 4.1498 21 6 13.0031 -5.5498 4.7900 22 7 13.7900 -4.5300 4.5243 23 14 13.2842 -6.5703 6.3292 24 1 14.2141 -7.6862 6.0202 25 1 13.8734 -5.7141 7.3899 26 1 11.9886 -7.1218 6.8009 27 6 8.2229 -5.6074 1.5215 28 6 6.9532 -5.1347 1.7888 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 1.6768 1.9563 -0.8900 34 1 1.6767 1.9563 0.8900 35 1 3.1301 1.4424 0.0005 36 1 1.4622 -0.7387 1.9895 37 1 2.7952 -0.5934 3.7852 38 1 4.1574 -1.4993 4.4861 39 1 4.4669 -0.1637 3.3506 40 1 5.2038 -2.7424 1.1979 41 1 4.6513 -4.4359 2.8512 42 1 5.3159 -3.3359 4.0829 43 1 7.6969 -2.8910 4.1979 44 1 9.9654 -3.7189 3.7228 45 1 10.9690 -6.1408 -0.0336 46 1 11.6632 -7.2202 1.1998 47 1 9.9124 -7.2447 0.8793 48 1 12.6332 -5.0848 2.0596 49 1 11.5464 -4.0090 2.9706 50 1 14.5160 -4.3076 5.1278 51 1 8.3690 -6.3693 0.7700 52 1 6.1061 -5.5272 1.2459 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000840975218.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:55:57 Heat of formation + Delta-G solvation = -11.922076 kcal Electronic energy + Delta-G solvation = -27997.581807 eV Core-core repulsion = 24189.588761 eV Total energy + Delta-G solvation = -3807.993046 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.31103 -38.97364 -36.95607 -36.09425 -35.14381 -32.78939 -32.29978 -30.77630 -30.38686 -28.70088 -27.76519 -27.64759 -25.88605 -24.58044 -23.54292 -22.06074 -21.48745 -21.35041 -20.36591 -19.57082 -17.66576 -16.81993 -16.55688 -16.36524 -15.78244 -15.35637 -15.10590 -14.90737 -14.41932 -14.34561 -14.21804 -13.89987 -13.63783 -13.48830 -13.28522 -13.00975 -12.83244 -12.76785 -12.63658 -12.50842 -12.34245 -12.22935 -12.07186 -11.79470 -11.71149 -11.49398 -11.38145 -11.35800 -11.22316 -10.92677 -10.68622 -10.66106 -10.23684 -9.92937 -9.84699 -9.72883 -9.44488 -8.82187 -8.48601 -8.43334 -8.21082 -6.43205 -5.99007 -4.15159 2.17002 2.23748 2.39877 2.81485 3.27259 3.34040 3.38617 4.13949 4.19145 4.32586 4.43279 4.52081 4.62091 4.70044 4.81071 4.86040 4.93759 5.13830 5.23527 5.25754 5.28482 5.34908 5.35714 5.40614 5.49101 5.55107 5.61562 5.64461 5.68665 5.81144 5.86977 5.87615 5.99897 6.07510 6.12939 6.16505 6.31439 6.43761 6.48449 6.68553 6.86078 7.00371 7.08113 7.18074 7.23147 7.31044 7.40878 7.46418 7.65261 7.83289 7.95989 8.18221 8.30409 8.52772 8.93939 9.51430 10.97819 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.021441 B = 0.001942 C = 0.001883 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1305.593663 B =14414.062159 C =14867.914546 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.135 3.865 3 C -0.164 4.164 4 N -0.728 5.728 5 C 0.514 3.486 6 O -0.527 6.527 7 C 0.065 3.935 8 H 0.066 0.934 9 C -0.136 4.136 10 N -0.667 5.667 11 C 0.117 3.883 12 C -0.173 4.173 13 C -0.049 4.049 14 C -0.189 4.189 15 C 0.243 3.757 16 N -0.615 5.615 17 C 0.098 3.902 18 C 0.248 3.752 19 C -0.531 4.531 20 H 0.059 0.941 21 C 0.061 3.939 22 N -0.895 5.895 23 Si 0.896 3.104 24 H -0.280 1.280 25 H -0.285 1.285 26 H -0.273 1.273 27 C -0.222 4.222 28 C -0.066 4.066 29 H 0.060 0.940 30 H 0.072 0.928 31 H 0.061 0.939 32 H 0.087 0.913 33 H 0.064 0.936 34 H 0.056 0.944 35 H 0.062 0.938 36 H 0.399 0.601 37 H 0.056 0.944 38 H 0.069 0.931 39 H 0.068 0.932 40 H 0.356 0.644 41 H 0.028 0.972 42 H 0.073 0.927 43 H 0.112 0.888 44 H 0.132 0.868 45 H 0.035 0.965 46 H 0.066 0.934 47 H 0.054 0.946 48 H 0.030 0.970 49 H 0.037 0.963 50 H 0.264 0.736 51 H 0.113 0.887 52 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.846 7.219 -5.769 28.392 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.031 3.969 3 C -0.222 4.222 4 N -0.382 5.382 5 C 0.299 3.701 6 O -0.401 6.401 7 C -0.048 4.048 8 H 0.084 0.916 9 C -0.194 4.194 10 N -0.303 5.303 11 C -0.011 4.011 12 C -0.176 4.176 13 C -0.068 4.068 14 C -0.211 4.211 15 C 0.135 3.865 16 N -0.321 5.321 17 C -0.046 4.046 18 C 0.129 3.871 19 C -0.570 4.570 20 H 0.077 0.923 21 C -0.141 4.141 22 N -0.533 5.533 23 Si 0.724 3.276 24 H -0.207 1.207 25 H -0.211 1.211 26 H -0.198 1.198 27 C -0.245 4.245 28 C -0.086 4.086 29 H 0.080 0.920 30 H 0.091 0.909 31 H 0.080 0.920 32 H 0.105 0.895 33 H 0.083 0.917 34 H 0.075 0.925 35 H 0.081 0.919 36 H 0.233 0.767 37 H 0.075 0.925 38 H 0.088 0.912 39 H 0.087 0.913 40 H 0.178 0.822 41 H 0.046 0.954 42 H 0.092 0.908 43 H 0.130 0.870 44 H 0.149 0.851 45 H 0.054 0.946 46 H 0.085 0.915 47 H 0.073 0.927 48 H 0.048 0.952 49 H 0.055 0.945 50 H 0.073 0.927 51 H 0.130 0.870 52 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -25.623 7.735 -6.089 27.449 hybrid contribution -0.481 -1.273 0.877 1.619 sum -26.105 6.462 -5.211 27.393 Atomic orbital electron populations 1.22077 0.94151 1.02589 1.02959 1.20938 0.93862 0.93186 0.88931 1.22185 1.02418 0.95642 1.01987 1.46109 1.17950 1.57312 1.16788 1.20792 0.81048 0.78578 0.89636 1.90720 1.55578 1.59003 1.34849 1.21503 0.92138 0.97620 0.93542 0.91591 1.21749 1.01518 0.99216 0.96909 1.60552 1.22968 1.35231 1.11541 1.20733 0.93530 0.89737 0.97139 1.19103 0.94051 1.02055 1.02410 1.20625 0.91550 0.97126 0.97540 1.20893 0.97785 1.00827 1.01604 1.17964 0.85117 0.91344 0.92048 1.47094 1.04823 1.40469 1.39708 1.21470 1.01381 0.91094 0.90633 1.19290 0.82225 0.94848 0.90778 1.21582 1.13969 1.14644 1.06781 0.92265 1.24971 0.95711 0.95269 0.98170 1.69935 1.18231 1.27395 1.37784 0.86520 0.78419 0.80019 0.82653 1.20660 1.21095 1.19821 1.20506 0.92052 1.06117 1.05820 1.20502 0.95788 0.96031 0.96245 0.92046 0.90911 0.92013 0.89472 0.91694 0.92503 0.91856 0.76676 0.92548 0.91233 0.91278 0.82208 0.95366 0.90828 0.87007 0.85070 0.94615 0.91482 0.92720 0.95217 0.94546 0.92663 0.86956 0.87776 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.66 9.38 37.16 0.35 -0.31 16 2 C 0.14 0.92 3.18 -67.93 -0.22 0.71 16 3 C -0.16 -1.14 9.48 37.16 0.35 -0.78 16 4 N -0.73 -5.15 4.97 -53.80 -0.27 -5.42 16 5 C 0.51 5.42 7.15 -10.98 -0.08 5.34 16 6 O -0.53 -7.78 15.31 5.55 0.09 -7.70 16 7 C 0.07 0.62 3.03 -68.86 -0.21 0.41 16 8 H 0.07 0.52 7.80 -51.93 -0.41 0.12 16 9 C -0.14 -1.09 9.31 37.16 0.35 -0.74 16 10 N -0.67 -8.46 6.17 -109.21 -0.67 -9.14 16 11 C 0.12 1.47 5.61 -4.98 -0.03 1.44 16 12 C -0.17 -2.76 5.40 -104.59 -0.56 -3.32 16 13 C -0.05 -0.87 9.69 -39.61 -0.38 -1.26 16 14 C -0.19 -3.93 9.21 -39.38 -0.36 -4.30 16 15 C 0.24 5.06 6.55 -83.79 -0.55 4.51 16 16 N -0.62 -13.51 2.99 -181.00 -0.54 -14.06 16 17 C 0.10 1.78 10.19 59.85 0.61 2.39 16 18 C 0.25 6.35 4.92 -5.20 -0.03 6.32 16 19 C -0.53 -14.65 9.39 -34.44 -0.32 -14.97 16 20 H 0.06 1.67 7.81 -52.49 -0.41 1.26 16 21 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 22 N -0.89 -25.87 13.29 55.43 0.74 -25.13 16 23 Si 0.90 21.45 29.54 -169.99 -5.02 16.43 16 24 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 25 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 26 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 27 C -0.22 -4.00 9.21 -39.39 -0.36 -4.36 16 28 C -0.07 -1.07 9.69 -39.61 -0.38 -1.45 16 29 H 0.06 0.20 8.14 -51.93 -0.42 -0.23 16 30 H 0.07 0.25 8.14 -51.93 -0.42 -0.17 16 31 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 32 H 0.09 0.77 7.58 -51.93 -0.39 0.38 16 33 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 34 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 35 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.40 1.73 8.02 -40.82 -0.33 1.41 16 37 H 0.06 0.30 7.56 -51.93 -0.39 -0.09 16 38 H 0.07 0.56 7.45 -51.93 -0.39 0.17 16 39 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 40 H 0.36 5.08 7.44 -39.29 -0.29 4.79 16 41 H 0.03 0.32 8.00 -51.93 -0.42 -0.09 16 42 H 0.07 0.86 7.38 -51.93 -0.38 0.48 16 43 H 0.11 1.80 8.06 -52.49 -0.42 1.38 16 44 H 0.13 3.00 6.14 -52.49 -0.32 2.68 16 45 H 0.04 0.59 8.14 -51.93 -0.42 0.16 16 46 H 0.07 1.23 8.07 -51.93 -0.42 0.81 16 47 H 0.05 0.87 6.20 -51.93 -0.32 0.55 16 48 H 0.03 0.80 8.07 -51.93 -0.42 0.38 16 49 H 0.04 0.98 6.19 -51.93 -0.32 0.66 16 50 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 51 H 0.11 1.83 6.14 -52.48 -0.32 1.51 16 52 H 0.10 1.42 8.06 -52.49 -0.42 1.00 16 LS Contribution 419.83 15.07 6.33 6.33 Total: -1.00 -31.82 419.83 -10.18 -42.00 By element: Atomic # 1 Polarization: 14.36 SS G_CDS: -8.90 Total: 5.46 kcal Atomic # 6 Polarization: -6.85 SS G_CDS: -1.93 Total: -8.77 kcal Atomic # 7 Polarization: -53.00 SS G_CDS: -0.75 Total: -53.75 kcal Atomic # 8 Polarization: -7.78 SS G_CDS: 0.09 Total: -7.70 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Total LS contribution 6.33 Total: 6.33 kcal Total: -31.82 -10.18 -42.00 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000840975218.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.079 kcal (2) G-P(sol) polarization free energy of solvation -31.823 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.744 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.178 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.001 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.922 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds