Wall clock time and date at job start Tue Mar 31 2020 17:55:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52997 * 109.47301 * 2 1 4 4 N 1.46501 * 109.46612 * 119.99944 * 2 1 3 5 5 C 1.34782 * 119.99606 * 154.99708 * 4 2 1 6 6 O 1.21285 * 120.00083 * 0.02562 * 5 4 2 7 7 C 1.50697 * 119.99889 * 179.97438 * 5 4 2 8 8 H 1.09002 * 109.47149 * 60.00753 * 7 5 4 9 9 C 1.52999 * 109.47371 * 300.00373 * 7 5 4 10 10 N 1.46906 * 109.47129 * 180.02562 * 7 5 4 11 11 C 1.46899 * 111.00049 * 205.00238 * 10 7 5 12 12 C 1.50699 * 109.47104 * 180.02562 * 11 10 7 13 13 C 1.38286 * 119.92533 * 90.00165 * 12 11 10 14 14 C 1.38104 * 120.07376 * 180.25715 * 13 12 11 15 15 C 1.38918 * 119.92017 * 359.44392 * 14 13 12 16 16 N 1.39676 * 120.07049 * 180.30184 * 15 14 13 17 17 C 1.46502 * 119.99924 * 180.25823 * 16 15 14 18 18 C 1.46500 * 120.00213 * 0.25045 * 16 15 14 19 19 C 1.50692 * 109.47029 * 90.00163 * 18 16 15 20 20 H 1.07998 * 120.00179 * 0.02562 * 19 18 16 21 21 C 1.37881 * 120.00178 * 180.02562 * 19 18 16 22 22 N 1.31521 * 119.99945 * 359.97438 * 21 19 18 23 23 Si 1.86805 * 120.00333 * 180.02562 * 21 19 18 24 24 H 1.48504 * 109.46906 * 89.99568 * 23 21 19 25 25 H 1.48497 * 109.46839 * 209.99888 * 23 21 19 26 26 H 1.48495 * 109.46807 * 329.99870 * 23 21 19 27 27 C 1.38905 * 119.85194 * 0.55157 * 15 14 13 28 28 C 1.38099 * 119.92845 * 359.72525 * 27 15 14 29 29 H 1.09002 * 109.47224 * 300.00252 * 1 2 3 30 30 H 1.09002 * 109.46766 * 59.99913 * 1 2 3 31 31 H 1.08998 * 109.47248 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.46709 * 239.99788 * 2 1 3 33 33 H 1.09002 * 109.47282 * 299.99772 * 3 2 1 34 34 H 1.09002 * 109.47187 * 59.99726 * 3 2 1 35 35 H 1.08999 * 109.47103 * 179.97438 * 3 2 1 36 36 H 0.96996 * 120.00703 * 334.99747 * 4 2 1 37 37 H 1.09001 * 109.46887 * 59.99657 * 9 7 5 38 38 H 1.08993 * 109.47209 * 179.97438 * 9 7 5 39 39 H 1.09002 * 109.47295 * 300.00291 * 9 7 5 40 40 H 1.00897 * 110.99569 * 328.95467 * 10 7 5 41 41 H 1.09006 * 109.47061 * 59.99820 * 11 10 7 42 42 H 1.09004 * 109.46817 * 300.00324 * 11 10 7 43 43 H 1.08002 * 119.96057 * 359.97173 * 13 12 11 44 44 H 1.07998 * 120.04042 * 179.72222 * 14 13 12 45 45 H 1.08990 * 109.47426 * 89.99418 * 17 16 15 46 46 H 1.09005 * 109.46823 * 210.00050 * 17 16 15 47 47 H 1.09005 * 109.46514 * 329.99017 * 17 16 15 48 48 H 1.09003 * 109.47215 * 210.00592 * 18 16 15 49 49 H 1.09002 * 109.46876 * 330.00328 * 18 16 15 50 50 H 0.96995 * 119.99824 * 180.02562 * 22 21 19 51 51 H 1.08006 * 120.03717 * 179.70113 * 27 15 14 52 52 H 1.07997 * 119.96598 * 179.97438 * 28 27 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 3.2402 -1.2593 1.1944 6 8 3.9358 -1.1988 0.2027 7 6 3.7427 -1.9692 2.4251 8 1 3.0702 -2.7912 2.6704 9 6 3.7944 -0.9857 3.5959 10 7 5.0896 -2.4974 2.1700 11 6 5.3782 -3.6456 3.0397 12 6 6.7653 -4.1588 2.7504 13 6 7.8472 -3.6531 3.4475 14 6 9.1203 -4.1174 3.1812 15 6 9.3119 -5.1017 2.2198 16 7 10.5974 -5.5780 1.9524 17 6 10.7984 -6.6121 0.9343 18 6 11.7449 -5.0434 2.6899 19 6 11.9713 -5.8663 3.9319 20 1 11.3254 -6.7040 4.1498 21 6 13.0031 -5.5498 4.7900 22 7 13.7900 -4.5300 4.5243 23 14 13.2842 -6.5703 6.3292 24 1 14.2141 -7.6862 6.0202 25 1 13.8734 -5.7141 7.3899 26 1 11.9886 -7.1218 6.8009 27 6 8.2229 -5.6074 1.5215 28 6 6.9532 -5.1347 1.7888 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 1.6768 1.9563 -0.8900 34 1 1.6767 1.9563 0.8900 35 1 3.1301 1.4424 0.0005 36 1 1.4622 -0.7387 1.9895 37 1 2.7952 -0.5934 3.7852 38 1 4.1574 -1.4993 4.4861 39 1 4.4669 -0.1637 3.3506 40 1 5.2038 -2.7424 1.1979 41 1 4.6513 -4.4359 2.8512 42 1 5.3159 -3.3359 4.0829 43 1 7.6969 -2.8910 4.1979 44 1 9.9654 -3.7189 3.7228 45 1 10.9690 -6.1408 -0.0336 46 1 11.6632 -7.2202 1.1998 47 1 9.9124 -7.2447 0.8793 48 1 12.6332 -5.0848 2.0596 49 1 11.5464 -4.0090 2.9706 50 1 14.5160 -4.3076 5.1278 51 1 8.3690 -6.3693 0.7700 52 1 6.1061 -5.5272 1.2459 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000840975218.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:55:56 Heat of formation + Delta-G solvation = -32.436569 kcal Electronic energy + Delta-G solvation = -27998.471382 eV Core-core repulsion = 24189.588761 eV Total energy + Delta-G solvation = -3808.882622 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.11157 -40.40446 -38.00251 -37.07087 -36.32943 -34.76505 -33.20844 -31.88379 -31.72340 -29.89176 -29.51802 -28.09195 -27.16935 -25.97422 -24.76030 -23.45895 -22.99125 -21.97824 -21.11902 -21.03371 -18.64171 -18.57617 -17.91542 -17.54229 -16.92653 -16.50034 -16.26665 -15.97777 -15.72098 -15.56521 -15.35228 -15.03978 -14.87127 -14.65891 -14.42055 -14.29117 -14.04979 -13.85045 -13.43410 -13.31015 -13.24011 -13.16233 -13.09914 -13.03709 -12.96873 -12.85991 -12.66579 -12.54097 -12.35599 -12.29117 -12.21961 -11.91847 -11.86462 -11.73022 -11.41033 -10.76270 -10.64181 -10.41506 -10.12659 -9.66186 -9.33822 -8.35818 -7.80217 -6.37422 0.71989 0.83335 1.36899 1.38052 1.49437 1.60918 2.15253 2.34548 2.63529 3.02330 3.06360 3.47687 3.72758 3.98182 4.05656 4.08126 4.15790 4.18091 4.23209 4.30690 4.32959 4.43949 4.49588 4.65166 4.70158 4.71948 4.74034 4.75976 4.84122 4.88156 4.91142 4.93255 4.95936 5.01507 5.03958 5.12839 5.20820 5.26955 5.32583 5.33115 5.36111 5.55873 5.59539 5.66079 5.70214 5.92680 6.06487 6.07263 6.22717 6.38479 6.50365 6.60304 6.82659 6.93592 7.26398 7.34331 8.83787 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.021441 B = 0.001942 C = 0.001883 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1305.593663 B =14414.062159 C =14867.914546 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.131 3.869 3 C -0.160 4.160 4 N -0.711 5.711 5 C 0.510 3.490 6 O -0.577 6.577 7 C 0.068 3.932 8 H 0.094 0.906 9 C -0.132 4.132 10 N -0.685 5.685 11 C 0.122 3.878 12 C -0.161 4.161 13 C -0.054 4.054 14 C -0.218 4.218 15 C 0.212 3.788 16 N -0.632 5.632 17 C 0.098 3.902 18 C 0.266 3.734 19 C -0.541 4.541 20 H 0.050 0.950 21 C 0.011 3.989 22 N -0.927 5.927 23 Si 0.964 3.036 24 H -0.270 1.270 25 H -0.279 1.279 26 H -0.271 1.271 27 C -0.218 4.218 28 C -0.063 4.063 29 H 0.077 0.923 30 H 0.080 0.920 31 H 0.064 0.936 32 H 0.062 0.938 33 H 0.076 0.924 34 H 0.070 0.930 35 H 0.029 0.971 36 H 0.416 0.584 37 H 0.088 0.912 38 H 0.072 0.928 39 H 0.045 0.955 40 H 0.345 0.655 41 H 0.051 0.949 42 H 0.085 0.915 43 H 0.124 0.876 44 H 0.095 0.905 45 H 0.050 0.950 46 H 0.057 0.943 47 H 0.079 0.921 48 H 0.008 0.992 49 H 0.010 0.990 50 H 0.267 0.733 51 H 0.132 0.868 52 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.774 6.447 -5.033 31.842 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.027 3.973 3 C -0.218 4.218 4 N -0.364 5.364 5 C 0.297 3.703 6 O -0.456 6.456 7 C -0.045 4.045 8 H 0.112 0.888 9 C -0.190 4.190 10 N -0.320 5.320 11 C -0.006 4.006 12 C -0.163 4.163 13 C -0.073 4.073 14 C -0.241 4.241 15 C 0.107 3.893 16 N -0.340 5.340 17 C -0.045 4.045 18 C 0.144 3.856 19 C -0.580 4.580 20 H 0.068 0.932 21 C -0.189 4.189 22 N -0.567 5.567 23 Si 0.789 3.211 24 H -0.196 1.196 25 H -0.204 1.204 26 H -0.196 1.196 27 C -0.241 4.241 28 C -0.082 4.082 29 H 0.096 0.904 30 H 0.099 0.901 31 H 0.083 0.917 32 H 0.080 0.920 33 H 0.095 0.905 34 H 0.089 0.911 35 H 0.049 0.951 36 H 0.253 0.747 37 H 0.106 0.894 38 H 0.091 0.909 39 H 0.065 0.935 40 H 0.166 0.834 41 H 0.069 0.931 42 H 0.104 0.896 43 H 0.142 0.858 44 H 0.113 0.887 45 H 0.069 0.931 46 H 0.076 0.924 47 H 0.097 0.903 48 H 0.026 0.974 49 H 0.028 0.972 50 H 0.076 0.924 51 H 0.150 0.850 52 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -29.631 6.971 -5.336 30.904 hybrid contribution 0.573 -0.933 0.601 1.249 sum -29.058 6.038 -4.734 30.054 Atomic orbital electron populations 1.22016 0.91424 1.03216 1.04197 1.21008 0.95857 0.92579 0.87856 1.22149 1.00231 0.96126 1.03333 1.46001 1.16974 1.55876 1.17555 1.21052 0.81514 0.78461 0.89270 1.90703 1.57168 1.61095 1.36671 1.21600 0.91030 0.98511 0.93361 0.88820 1.21759 1.02956 0.98151 0.96175 1.60499 1.25475 1.35231 1.10805 1.20717 0.91580 0.90491 0.97774 1.19518 0.95272 1.00777 1.00761 1.20805 0.90997 0.97356 0.98158 1.20799 0.98075 1.02412 1.02775 1.18239 0.85430 0.92332 0.93296 1.46956 1.04305 1.41940 1.40774 1.21598 1.02151 0.90552 0.90184 1.18778 0.82989 0.93509 0.90317 1.21769 1.13931 1.14506 1.07786 0.93162 1.25825 0.95361 0.96359 1.01311 1.70049 1.18755 1.28811 1.39049 0.85460 0.78378 0.78573 0.78692 1.19567 1.20391 1.19581 1.20768 0.91805 1.06090 1.05429 1.20926 0.96068 0.95331 0.95857 0.90418 0.90084 0.91677 0.91981 0.90489 0.91065 0.95129 0.74694 0.89355 0.90883 0.93546 0.83394 0.93063 0.89646 0.85847 0.88706 0.93146 0.92409 0.90284 0.97367 0.97240 0.92398 0.85014 0.84250 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.81 9.38 71.98 0.68 -0.14 16 2 C 0.13 1.61 3.18 44.99 0.14 1.76 16 3 C -0.16 -2.07 9.48 71.98 0.68 -1.38 16 4 N -0.71 -8.56 4.97 -442.52 -2.20 -10.75 16 5 C 0.51 10.09 7.15 87.66 0.63 10.72 16 6 O -0.58 -17.23 15.31 -3.05 -0.05 -17.28 16 7 C 0.07 1.11 3.03 44.17 0.13 1.25 16 8 H 0.09 1.07 7.80 -2.39 -0.02 1.05 16 9 C -0.13 -1.77 9.31 71.98 0.67 -1.09 16 10 N -0.69 -16.10 6.17 -499.44 -3.08 -19.19 16 11 C 0.12 2.70 5.61 85.56 0.48 3.18 16 12 C -0.16 -4.83 5.40 -19.84 -0.11 -4.93 16 13 C -0.05 -1.94 9.69 22.25 0.22 -1.72 16 14 C -0.22 -9.57 9.21 22.40 0.21 -9.37 16 15 C 0.21 9.08 6.55 38.21 0.25 9.33 16 16 N -0.63 -28.87 2.99 -726.56 -2.17 -31.04 16 17 C 0.10 3.56 10.19 127.77 1.30 4.87 16 18 C 0.27 14.47 4.92 85.63 0.42 14.89 16 19 C -0.54 -31.11 9.39 25.60 0.24 -30.87 16 20 H 0.05 2.92 7.81 -2.91 -0.02 2.89 16 21 C 0.01 0.60 5.46 84.65 0.46 1.07 16 22 N -0.93 -55.48 13.29 21.45 0.28 -55.19 16 23 Si 0.96 44.72 29.54 68.60 2.03 46.75 16 24 H -0.27 -12.04 7.11 99.48 0.71 -11.34 16 25 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 26 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16 27 C -0.22 -7.59 9.21 22.40 0.21 -7.38 16 28 C -0.06 -1.87 9.69 22.25 0.22 -1.65 16 29 H 0.08 0.20 8.14 -2.39 -0.02 0.18 16 30 H 0.08 0.34 8.14 -2.39 -0.02 0.32 16 31 H 0.06 0.34 8.14 -2.39 -0.02 0.32 16 32 H 0.06 1.10 7.58 -2.39 -0.02 1.08 16 33 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 34 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 35 H 0.03 0.59 8.14 -2.39 -0.02 0.57 16 36 H 0.42 2.16 8.02 -92.71 -0.74 1.41 16 37 H 0.09 0.59 7.56 -2.39 -0.02 0.57 16 38 H 0.07 0.95 7.45 -2.39 -0.02 0.93 16 39 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 40 H 0.35 9.44 7.44 -89.70 -0.67 8.77 16 41 H 0.05 0.93 8.00 -2.38 -0.02 0.91 16 42 H 0.09 1.72 7.38 -2.39 -0.02 1.70 16 43 H 0.12 4.01 8.06 -2.91 -0.02 3.99 16 44 H 0.09 4.78 6.14 -2.91 -0.02 4.76 16 45 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 46 H 0.06 2.16 8.07 -2.38 -0.02 2.14 16 47 H 0.08 2.44 6.20 -2.38 -0.01 2.42 16 48 H 0.01 0.48 8.07 -2.39 -0.02 0.46 16 49 H 0.01 0.57 6.19 -2.39 -0.01 0.55 16 50 H 0.27 15.01 8.31 -92.71 -0.77 14.24 16 51 H 0.13 3.99 6.14 -2.91 -0.02 3.97 16 52 H 0.14 3.20 8.06 -2.91 -0.02 3.18 16 Total: -1.00 -73.83 419.83 1.13 -72.69 By element: Atomic # 1 Polarization: 26.00 SS G_CDS: -0.50 Total: 25.50 kcal Atomic # 6 Polarization: -18.31 SS G_CDS: 6.82 Total: -11.49 kcal Atomic # 7 Polarization: -109.00 SS G_CDS: -7.17 Total: -116.17 kcal Atomic # 8 Polarization: -17.23 SS G_CDS: -0.05 Total: -17.28 kcal Atomic # 14 Polarization: 44.72 SS G_CDS: 2.03 Total: 46.75 kcal Total: -73.83 1.13 -72.69 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000840975218.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.256 kcal (2) G-P(sol) polarization free energy of solvation -73.826 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.570 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.693 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.437 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds