Wall clock time and date at job start Tue Mar 31 2020 17:56:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53004 * 109.47083 * 2 1 4 4 N 1.46498 * 109.47257 * 119.99988 * 2 1 3 5 5 C 1.34777 * 119.99828 * 84.72116 * 4 2 1 6 6 O 1.21283 * 120.00222 * 0.28168 * 5 4 2 7 7 C 1.50703 * 120.00290 * 180.27728 * 5 4 2 8 8 H 1.08998 * 109.46954 * 300.00581 * 7 5 4 9 9 C 1.53001 * 109.46771 * 60.00208 * 7 5 4 10 10 N 1.46896 * 109.47254 * 180.02562 * 7 5 4 11 11 C 1.46904 * 110.99743 * 155.00163 * 10 7 5 12 12 C 1.50702 * 109.46935 * 179.97438 * 11 10 7 13 13 C 1.38284 * 119.92647 * 269.72764 * 12 11 10 14 14 C 1.38106 * 120.07604 * 179.72827 * 13 12 11 15 15 C 1.38907 * 119.92362 * 0.54126 * 14 13 12 16 16 N 1.39666 * 120.07810 * 179.75134 * 15 14 13 17 17 C 1.46507 * 120.00609 * 179.97438 * 16 15 14 18 18 C 1.46504 * 119.99931 * 359.97438 * 16 15 14 19 19 C 1.50693 * 109.47483 * 89.99901 * 18 16 15 20 20 H 1.08006 * 120.00277 * 0.02562 * 19 18 16 21 21 C 1.37883 * 120.00254 * 180.02562 * 19 18 16 22 22 N 1.31510 * 119.99567 * 0.02562 * 21 19 18 23 23 Si 1.86794 * 120.00034 * 179.97438 * 21 19 18 24 24 H 1.48504 * 109.46972 * 60.00123 * 23 21 19 25 25 H 1.48500 * 109.47130 * 180.02562 * 23 21 19 26 26 H 1.48499 * 109.47328 * 300.00208 * 23 21 19 27 27 C 1.38918 * 119.84892 * 359.73085 * 15 14 13 28 28 C 1.38100 * 119.92722 * 0.02562 * 27 15 14 29 29 H 1.09003 * 109.47054 * 59.99725 * 1 2 3 30 30 H 1.08996 * 109.47245 * 179.97438 * 1 2 3 31 31 H 1.08995 * 109.47098 * 300.00077 * 1 2 3 32 32 H 1.08995 * 109.47098 * 239.99923 * 2 1 3 33 33 H 1.08998 * 109.46617 * 179.97438 * 3 2 1 34 34 H 1.08994 * 109.47168 * 299.99945 * 3 2 1 35 35 H 1.08994 * 109.46839 * 60.00381 * 3 2 1 36 36 H 0.97001 * 120.00384 * 265.00562 * 4 2 1 37 37 H 1.08992 * 109.47503 * 60.00389 * 9 7 5 38 38 H 1.08998 * 109.46818 * 180.02562 * 9 7 5 39 39 H 1.09008 * 109.47076 * 299.99851 * 9 7 5 40 40 H 1.00905 * 110.99923 * 278.95049 * 10 7 5 41 41 H 1.08992 * 109.47000 * 299.99435 * 11 10 7 42 42 H 1.08994 * 109.47240 * 59.99967 * 11 10 7 43 43 H 1.08004 * 119.95801 * 359.97438 * 13 12 11 44 44 H 1.08000 * 120.03534 * 180.27376 * 14 13 12 45 45 H 1.08998 * 109.46978 * 89.99645 * 17 16 15 46 46 H 1.08996 * 109.47155 * 210.00405 * 17 16 15 47 47 H 1.08999 * 109.46755 * 330.00132 * 17 16 15 48 48 H 1.09003 * 109.47143 * 210.00307 * 18 16 15 49 49 H 1.09002 * 109.46826 * 329.99864 * 18 16 15 50 50 H 0.97003 * 120.00095 * 180.02562 * 22 21 19 51 51 H 1.07998 * 120.03500 * 179.97438 * 27 15 14 52 52 H 1.08000 * 119.96522 * 179.97438 * 28 27 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 2.1417 -2.0327 1.1962 6 8 1.8533 -2.6683 0.2043 7 6 2.6382 -2.7438 2.4287 8 1 3.6381 -2.3873 2.6758 9 6 1.6922 -2.4595 3.5972 10 7 2.6830 -4.1900 2.1750 11 6 3.6651 -4.8472 3.0478 12 6 3.6823 -6.3264 2.7599 13 6 2.8444 -7.1753 3.4595 14 6 2.8536 -8.5306 3.1942 15 6 3.7140 -9.0423 2.2312 16 7 3.7297 -10.4130 1.9640 17 6 4.6374 -10.9510 0.9475 18 6 2.8385 -11.3131 2.7001 19 6 1.5310 -11.4401 1.9617 20 1 1.3791 -10.9043 1.0363 21 6 0.5285 -12.2403 2.4675 22 7 0.7132 -12.8924 3.5945 23 14 -1.0925 -12.3971 1.5525 24 1 -0.8439 -12.9477 0.1960 25 1 -1.9962 -13.3086 2.2993 26 1 -1.7262 -11.0592 1.4352 27 6 4.5585 -8.1874 1.5341 28 6 4.5405 -6.8325 1.8009 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8899 32 1 1.8933 -0.5138 -0.8899 33 1 3.1300 1.4424 0.0005 34 1 1.6767 1.9563 -0.8899 35 1 1.6767 1.9563 0.8900 36 1 2.2490 -0.1823 1.9895 37 1 0.6923 -2.8159 3.3502 38 1 2.0515 -2.9734 4.4887 39 1 1.6594 -1.3863 3.7853 40 1 1.7693 -4.6044 2.2824 41 1 4.6541 -4.4290 2.8614 42 1 3.3918 -4.6836 4.0901 43 1 2.1791 -6.7773 4.2115 44 1 2.1957 -9.1923 3.7379 45 1 5.5872 -11.2157 1.4121 46 1 4.1933 -11.8386 0.4970 47 1 4.8070 -10.1987 0.1772 48 1 3.3040 -12.2950 2.7862 49 1 2.6557 -10.9091 3.6958 50 1 0.0082 -13.4556 3.9502 51 1 5.2289 -8.5821 0.7851 52 1 5.1971 -6.1674 1.2596 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000840975220.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:56:01 Heat of formation + Delta-G solvation = -10.294561 kcal Electronic energy + Delta-G solvation = -28106.851949 eV Core-core repulsion = 24298.929476 eV Total energy + Delta-G solvation = -3807.922472 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.10248 -38.97936 -36.98438 -36.00272 -35.20837 -32.77475 -32.18281 -30.76008 -30.39249 -28.57242 -27.75694 -27.58792 -25.77191 -24.60816 -23.63131 -22.14146 -21.51647 -21.33049 -20.39213 -19.57073 -17.47176 -16.61356 -16.52666 -16.36132 -15.67907 -15.20825 -15.06768 -14.88649 -14.54423 -14.26752 -14.08096 -13.94050 -13.66365 -13.42990 -13.28162 -12.96958 -12.84895 -12.78531 -12.69625 -12.65509 -12.43514 -12.15568 -11.84983 -11.76528 -11.71936 -11.63422 -11.36709 -11.29364 -11.21144 -10.93124 -10.74618 -10.63797 -10.24613 -9.86572 -9.78170 -9.71620 -9.28386 -8.82690 -8.48091 -8.34526 -8.21061 -6.43464 -5.99150 -4.14970 2.15839 2.24269 2.60804 2.91885 3.30712 3.34399 3.38899 4.15131 4.22121 4.42825 4.43933 4.58745 4.68835 4.69935 4.77520 4.84093 4.89103 5.19137 5.22117 5.23711 5.28447 5.32261 5.33965 5.41111 5.45258 5.56074 5.63034 5.67217 5.72596 5.75123 5.81198 5.86859 5.92979 6.05173 6.11580 6.30220 6.32568 6.43259 6.47394 6.69136 6.86482 7.00577 7.09126 7.23416 7.26576 7.32967 7.37377 7.45839 7.64611 7.83505 8.18114 8.19679 8.30066 8.52296 8.94130 9.51730 10.97701 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.013419 B = 0.002231 C = 0.002070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2086.132472 B =12544.787173 C =13523.990753 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.136 3.864 3 C -0.159 4.159 4 N -0.734 5.734 5 C 0.516 3.484 6 O -0.512 6.512 7 C 0.067 3.933 8 H 0.101 0.899 9 C -0.180 4.180 10 N -0.662 5.662 11 C 0.118 3.882 12 C -0.174 4.174 13 C -0.066 4.066 14 C -0.188 4.188 15 C 0.242 3.758 16 N -0.615 5.615 17 C 0.098 3.902 18 C 0.249 3.751 19 C -0.531 4.531 20 H 0.059 0.941 21 C 0.061 3.939 22 N -0.896 5.896 23 Si 0.896 3.104 24 H -0.277 1.277 25 H -0.287 1.287 26 H -0.275 1.275 27 C -0.222 4.222 28 C -0.048 4.048 29 H 0.063 0.937 30 H 0.061 0.939 31 H 0.055 0.945 32 H 0.087 0.913 33 H 0.061 0.939 34 H 0.071 0.929 35 H 0.059 0.941 36 H 0.396 0.604 37 H 0.064 0.936 38 H 0.069 0.931 39 H 0.063 0.937 40 H 0.351 0.649 41 H 0.071 0.929 42 H 0.031 0.969 43 H 0.107 0.893 44 H 0.131 0.869 45 H 0.035 0.965 46 H 0.066 0.934 47 H 0.055 0.945 48 H 0.030 0.970 49 H 0.036 0.964 50 H 0.264 0.736 51 H 0.113 0.887 52 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.472 26.532 -0.449 27.094 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.032 3.968 3 C -0.217 4.217 4 N -0.389 5.389 5 C 0.301 3.699 6 O -0.385 6.385 7 C -0.047 4.047 8 H 0.119 0.881 9 C -0.239 4.239 10 N -0.294 5.294 11 C -0.009 4.009 12 C -0.177 4.177 13 C -0.086 4.086 14 C -0.211 4.211 15 C 0.135 3.865 16 N -0.321 5.321 17 C -0.046 4.046 18 C 0.129 3.871 19 C -0.570 4.570 20 H 0.077 0.923 21 C -0.141 4.141 22 N -0.535 5.535 23 Si 0.724 3.276 24 H -0.202 1.202 25 H -0.212 1.212 26 H -0.201 1.201 27 C -0.245 4.245 28 C -0.068 4.068 29 H 0.082 0.918 30 H 0.080 0.920 31 H 0.074 0.926 32 H 0.105 0.895 33 H 0.080 0.920 34 H 0.090 0.910 35 H 0.078 0.922 36 H 0.230 0.770 37 H 0.083 0.917 38 H 0.088 0.912 39 H 0.082 0.918 40 H 0.171 0.829 41 H 0.089 0.911 42 H 0.049 0.951 43 H 0.125 0.875 44 H 0.149 0.851 45 H 0.054 0.946 46 H 0.085 0.915 47 H 0.074 0.926 48 H 0.048 0.952 49 H 0.054 0.946 50 H 0.074 0.926 51 H 0.131 0.869 52 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 5.609 25.698 -1.642 26.354 hybrid contribution -1.426 0.071 0.721 1.600 sum 4.183 25.769 -0.921 26.122 Atomic orbital electron populations 1.22186 0.95422 1.02756 1.01851 1.20889 0.94091 0.92647 0.89197 1.22069 1.01677 0.95177 1.02797 1.46164 1.69019 1.07133 1.16579 1.20718 0.77522 0.81751 0.89904 1.90728 1.47569 1.65679 1.34545 1.21465 1.00260 0.91258 0.91693 0.88093 1.22473 1.00393 1.02460 0.98587 1.60238 1.12861 0.99571 1.56730 1.20694 0.95517 0.91489 0.93239 1.19105 1.02676 0.93414 1.02542 1.20640 0.96940 0.92955 0.98042 1.20832 1.02937 0.95391 1.01901 1.17963 0.92191 0.84245 0.92085 1.47097 1.41134 1.03652 1.40204 1.21475 0.92681 0.99190 0.91254 1.19278 0.87772 0.88142 0.91878 1.21554 0.98868 1.27806 1.08731 0.92282 1.24962 0.98762 0.95348 0.95027 1.69921 1.34017 1.29931 1.19606 0.86578 0.83152 0.78111 0.79759 1.20230 1.21227 1.20064 1.20573 1.05230 0.93513 1.05231 1.20490 0.97016 0.93960 0.95300 0.91783 0.91963 0.92640 0.89497 0.92006 0.91024 0.92184 0.77034 0.91699 0.91234 0.91807 0.82933 0.91105 0.95080 0.87484 0.85130 0.94631 0.91475 0.92631 0.95223 0.94642 0.92634 0.86901 0.87307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.24 9.48 37.16 0.35 -0.88 16 2 C 0.14 1.03 3.18 -67.93 -0.22 0.82 16 3 C -0.16 -0.75 9.38 37.16 0.35 -0.40 16 4 N -0.73 -5.62 4.97 -53.81 -0.27 -5.89 16 5 C 0.52 5.82 7.19 -10.98 -0.08 5.74 16 6 O -0.51 -8.35 16.10 5.55 0.09 -8.26 16 7 C 0.07 0.64 3.00 -68.86 -0.21 0.43 16 8 H 0.10 0.79 7.80 -51.93 -0.40 0.38 16 9 C -0.18 -1.29 9.06 37.16 0.34 -0.96 16 10 N -0.66 -8.44 5.73 -109.22 -0.63 -9.06 16 11 C 0.12 1.45 5.61 -4.97 -0.03 1.42 16 12 C -0.17 -2.74 5.39 -104.59 -0.56 -3.31 16 13 C -0.07 -1.14 9.69 -39.61 -0.38 -1.52 16 14 C -0.19 -3.87 9.21 -39.38 -0.36 -4.23 16 15 C 0.24 5.04 6.55 -83.79 -0.55 4.49 16 16 N -0.62 -13.48 2.99 -181.00 -0.54 -14.02 16 17 C 0.10 1.78 10.19 59.85 0.61 2.39 16 18 C 0.25 6.34 4.91 -5.20 -0.03 6.31 16 19 C -0.53 -14.71 9.39 -34.44 -0.32 -15.04 16 20 H 0.06 1.68 7.81 -52.48 -0.41 1.27 16 21 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 22 N -0.90 -25.87 13.29 55.43 0.74 -25.13 16 23 Si 0.90 21.69 29.54 -169.99 -5.02 16.67 16 24 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 25 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 26 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 27 C -0.22 -4.04 9.21 -39.38 -0.36 -4.40 16 28 C -0.05 -0.80 9.69 -39.61 -0.38 -1.18 16 29 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 30 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 32 H 0.09 0.86 7.58 -51.93 -0.39 0.47 16 33 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 34 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 35 H 0.06 0.22 8.14 -51.93 -0.42 -0.20 16 36 H 0.40 1.87 8.02 -40.82 -0.33 1.55 16 37 H 0.06 0.54 8.13 -51.93 -0.42 0.12 16 38 H 0.07 0.48 7.45 -51.93 -0.39 0.10 16 39 H 0.06 0.32 7.56 -51.92 -0.39 -0.08 16 40 H 0.35 4.79 8.46 -39.29 -0.33 4.46 16 41 H 0.07 0.80 8.00 -51.93 -0.42 0.38 16 42 H 0.03 0.34 7.38 -51.93 -0.38 -0.05 16 43 H 0.11 1.60 8.06 -52.48 -0.42 1.18 16 44 H 0.13 2.95 6.14 -52.49 -0.32 2.63 16 45 H 0.04 0.58 8.14 -51.93 -0.42 0.15 16 46 H 0.07 1.24 8.07 -51.93 -0.42 0.82 16 47 H 0.06 0.90 6.20 -51.93 -0.32 0.58 16 48 H 0.03 0.79 8.07 -51.93 -0.42 0.37 16 49 H 0.04 0.95 6.20 -51.93 -0.32 0.63 16 50 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 51 H 0.11 1.87 6.14 -52.49 -0.32 1.54 16 52 H 0.11 1.58 8.06 -52.49 -0.42 1.16 16 LS Contribution 420.95 15.07 6.34 6.34 Total: -1.00 -32.58 420.95 -10.16 -42.74 By element: Atomic # 1 Polarization: 14.27 SS G_CDS: -8.94 Total: 5.33 kcal Atomic # 6 Polarization: -6.78 SS G_CDS: -1.93 Total: -8.71 kcal Atomic # 7 Polarization: -53.41 SS G_CDS: -0.70 Total: -54.10 kcal Atomic # 8 Polarization: -8.35 SS G_CDS: 0.09 Total: -8.26 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.67 kcal Total LS contribution 6.34 Total: 6.34 kcal Total: -32.58 -10.16 -42.74 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000840975220.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.443 kcal (2) G-P(sol) polarization free energy of solvation -32.582 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.139 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.156 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.738 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.295 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds