Wall clock time and date at job start Tue Mar 31 2020 17:56:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53004 * 109.47083 * 2 1 4 4 N 1.46498 * 109.47257 * 119.99988 * 2 1 3 5 5 C 1.34777 * 119.99828 * 84.72116 * 4 2 1 6 6 O 1.21283 * 120.00222 * 0.28168 * 5 4 2 7 7 C 1.50703 * 120.00290 * 180.27728 * 5 4 2 8 8 H 1.08998 * 109.46954 * 300.00581 * 7 5 4 9 9 C 1.53001 * 109.46771 * 60.00208 * 7 5 4 10 10 N 1.46896 * 109.47254 * 180.02562 * 7 5 4 11 11 C 1.46904 * 110.99743 * 155.00163 * 10 7 5 12 12 C 1.50702 * 109.46935 * 179.97438 * 11 10 7 13 13 C 1.38284 * 119.92647 * 269.72764 * 12 11 10 14 14 C 1.38106 * 120.07604 * 179.72827 * 13 12 11 15 15 C 1.38907 * 119.92362 * 0.54126 * 14 13 12 16 16 N 1.39666 * 120.07810 * 179.75134 * 15 14 13 17 17 C 1.46507 * 120.00609 * 179.97438 * 16 15 14 18 18 C 1.46504 * 119.99931 * 359.97438 * 16 15 14 19 19 C 1.50693 * 109.47483 * 89.99901 * 18 16 15 20 20 H 1.08006 * 120.00277 * 0.02562 * 19 18 16 21 21 C 1.37883 * 120.00254 * 180.02562 * 19 18 16 22 22 N 1.31510 * 119.99567 * 0.02562 * 21 19 18 23 23 Si 1.86794 * 120.00034 * 179.97438 * 21 19 18 24 24 H 1.48504 * 109.46972 * 60.00123 * 23 21 19 25 25 H 1.48500 * 109.47130 * 180.02562 * 23 21 19 26 26 H 1.48499 * 109.47328 * 300.00208 * 23 21 19 27 27 C 1.38918 * 119.84892 * 359.73085 * 15 14 13 28 28 C 1.38100 * 119.92722 * 0.02562 * 27 15 14 29 29 H 1.09003 * 109.47054 * 59.99725 * 1 2 3 30 30 H 1.08996 * 109.47245 * 179.97438 * 1 2 3 31 31 H 1.08995 * 109.47098 * 300.00077 * 1 2 3 32 32 H 1.08995 * 109.47098 * 239.99923 * 2 1 3 33 33 H 1.08998 * 109.46617 * 179.97438 * 3 2 1 34 34 H 1.08994 * 109.47168 * 299.99945 * 3 2 1 35 35 H 1.08994 * 109.46839 * 60.00381 * 3 2 1 36 36 H 0.97001 * 120.00384 * 265.00562 * 4 2 1 37 37 H 1.08992 * 109.47503 * 60.00389 * 9 7 5 38 38 H 1.08998 * 109.46818 * 180.02562 * 9 7 5 39 39 H 1.09008 * 109.47076 * 299.99851 * 9 7 5 40 40 H 1.00905 * 110.99923 * 278.95049 * 10 7 5 41 41 H 1.08992 * 109.47000 * 299.99435 * 11 10 7 42 42 H 1.08994 * 109.47240 * 59.99967 * 11 10 7 43 43 H 1.08004 * 119.95801 * 359.97438 * 13 12 11 44 44 H 1.08000 * 120.03534 * 180.27376 * 14 13 12 45 45 H 1.08998 * 109.46978 * 89.99645 * 17 16 15 46 46 H 1.08996 * 109.47155 * 210.00405 * 17 16 15 47 47 H 1.08999 * 109.46755 * 330.00132 * 17 16 15 48 48 H 1.09003 * 109.47143 * 210.00307 * 18 16 15 49 49 H 1.09002 * 109.46826 * 329.99864 * 18 16 15 50 50 H 0.97003 * 120.00095 * 180.02562 * 22 21 19 51 51 H 1.07998 * 120.03500 * 179.97438 * 27 15 14 52 52 H 1.08000 * 119.96522 * 179.97438 * 28 27 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 2.1417 -2.0327 1.1962 6 8 1.8533 -2.6683 0.2043 7 6 2.6382 -2.7438 2.4287 8 1 3.6381 -2.3873 2.6758 9 6 1.6922 -2.4595 3.5972 10 7 2.6830 -4.1900 2.1750 11 6 3.6651 -4.8472 3.0478 12 6 3.6823 -6.3264 2.7599 13 6 2.8444 -7.1753 3.4595 14 6 2.8536 -8.5306 3.1942 15 6 3.7140 -9.0423 2.2312 16 7 3.7297 -10.4130 1.9640 17 6 4.6374 -10.9510 0.9475 18 6 2.8385 -11.3131 2.7001 19 6 1.5310 -11.4401 1.9617 20 1 1.3791 -10.9043 1.0363 21 6 0.5285 -12.2403 2.4675 22 7 0.7132 -12.8924 3.5945 23 14 -1.0925 -12.3971 1.5525 24 1 -0.8439 -12.9477 0.1960 25 1 -1.9962 -13.3086 2.2993 26 1 -1.7262 -11.0592 1.4352 27 6 4.5585 -8.1874 1.5341 28 6 4.5405 -6.8325 1.8009 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8899 32 1 1.8933 -0.5138 -0.8899 33 1 3.1300 1.4424 0.0005 34 1 1.6767 1.9563 -0.8899 35 1 1.6767 1.9563 0.8900 36 1 2.2490 -0.1823 1.9895 37 1 0.6923 -2.8159 3.3502 38 1 2.0515 -2.9734 4.4887 39 1 1.6594 -1.3863 3.7853 40 1 1.7693 -4.6044 2.2824 41 1 4.6541 -4.4290 2.8614 42 1 3.3918 -4.6836 4.0901 43 1 2.1791 -6.7773 4.2115 44 1 2.1957 -9.1923 3.7379 45 1 5.5872 -11.2157 1.4121 46 1 4.1933 -11.8386 0.4970 47 1 4.8070 -10.1987 0.1772 48 1 3.3040 -12.2950 2.7862 49 1 2.6557 -10.9091 3.6958 50 1 0.0082 -13.4556 3.9502 51 1 5.2289 -8.5821 0.7851 52 1 5.1971 -6.1674 1.2596 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000840975220.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:56:00 Heat of formation + Delta-G solvation = -31.469503 kcal Electronic energy + Delta-G solvation = -28107.770163 eV Core-core repulsion = 24298.929476 eV Total energy + Delta-G solvation = -3808.840687 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -40.95183 -40.39281 -38.04940 -37.00311 -36.40385 -34.77630 -33.11749 -31.87642 -31.72167 -29.82894 -29.43194 -28.08321 -27.08354 -25.87666 -24.88503 -23.58192 -22.94629 -22.04419 -21.21809 -20.99790 -18.63933 -18.44880 -17.86154 -17.30717 -16.94381 -16.45290 -16.25498 -15.94242 -15.73953 -15.42177 -15.31656 -15.08975 -14.84001 -14.62318 -14.38351 -14.26306 -14.06225 -13.96135 -13.59986 -13.33407 -13.19591 -13.14611 -13.08807 -13.04544 -13.01386 -12.81769 -12.64933 -12.53769 -12.38272 -12.26807 -12.18797 -11.98432 -11.88349 -11.76487 -11.39871 -10.68665 -10.64774 -10.41405 -10.02846 -9.65497 -9.23366 -8.36696 -7.80067 -6.37830 0.72257 0.84207 1.35753 1.37724 1.46053 1.77146 2.20756 2.33580 2.63613 3.04748 3.05917 3.53522 3.81167 3.99865 4.04033 4.05917 4.17171 4.18431 4.23484 4.27971 4.34633 4.41058 4.51133 4.64794 4.69020 4.71553 4.74534 4.77134 4.79032 4.83092 4.87948 4.93478 4.94864 5.01878 5.06181 5.13599 5.20149 5.21527 5.28071 5.33631 5.34225 5.58991 5.63979 5.67731 5.70159 5.92858 6.06907 6.07428 6.23868 6.37931 6.50106 6.72464 6.82332 6.93784 7.33670 7.43449 8.82203 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.013419 B = 0.002231 C = 0.002070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2086.132472 B =12544.787173 C =13523.990753 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.132 3.868 3 C -0.150 4.150 4 N -0.716 5.716 5 C 0.512 3.488 6 O -0.573 6.573 7 C 0.071 3.929 8 H 0.127 0.873 9 C -0.173 4.173 10 N -0.684 5.684 11 C 0.125 3.875 12 C -0.161 4.161 13 C -0.066 4.066 14 C -0.217 4.217 15 C 0.212 3.788 16 N -0.632 5.632 17 C 0.098 3.902 18 C 0.267 3.733 19 C -0.542 4.542 20 H 0.046 0.954 21 C 0.013 3.987 22 N -0.924 5.924 23 Si 0.960 3.040 24 H -0.270 1.270 25 H -0.276 1.276 26 H -0.275 1.275 27 C -0.220 4.220 28 C -0.051 4.051 29 H 0.074 0.926 30 H 0.029 0.971 31 H 0.071 0.929 32 H 0.057 0.943 33 H 0.064 0.936 34 H 0.079 0.921 35 H 0.077 0.923 36 H 0.414 0.586 37 H 0.048 0.952 38 H 0.077 0.923 39 H 0.091 0.909 40 H 0.341 0.659 41 H 0.089 0.911 42 H 0.052 0.948 43 H 0.127 0.873 44 H 0.096 0.904 45 H 0.054 0.946 46 H 0.056 0.944 47 H 0.075 0.925 48 H 0.010 0.990 49 H 0.013 0.987 50 H 0.268 0.732 51 H 0.130 0.870 52 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.097 30.147 -0.347 30.759 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.027 3.973 3 C -0.208 4.208 4 N -0.371 5.371 5 C 0.298 3.702 6 O -0.450 6.450 7 C -0.042 4.042 8 H 0.144 0.856 9 C -0.232 4.232 10 N -0.315 5.315 11 C -0.003 4.003 12 C -0.163 4.163 13 C -0.085 4.085 14 C -0.240 4.240 15 C 0.107 3.893 16 N -0.340 5.340 17 C -0.045 4.045 18 C 0.145 3.855 19 C -0.581 4.581 20 H 0.064 0.936 21 C -0.186 4.186 22 N -0.564 5.564 23 Si 0.785 3.215 24 H -0.195 1.195 25 H -0.201 1.201 26 H -0.200 1.200 27 C -0.243 4.243 28 C -0.070 4.070 29 H 0.093 0.907 30 H 0.048 0.952 31 H 0.090 0.910 32 H 0.076 0.924 33 H 0.083 0.917 34 H 0.098 0.902 35 H 0.096 0.904 36 H 0.251 0.749 37 H 0.067 0.933 38 H 0.096 0.904 39 H 0.109 0.891 40 H 0.160 0.840 41 H 0.107 0.893 42 H 0.070 0.930 43 H 0.145 0.855 44 H 0.114 0.886 45 H 0.072 0.928 46 H 0.074 0.926 47 H 0.094 0.906 48 H 0.028 0.972 49 H 0.031 0.969 50 H 0.076 0.924 51 H 0.147 0.853 52 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 6.269 29.393 -1.516 30.093 hybrid contribution -1.584 -0.870 0.701 1.938 sum 4.685 28.523 -0.816 28.917 Atomic orbital electron populations 1.22146 0.95389 1.00989 1.03256 1.20950 0.94134 0.94139 0.88050 1.22005 1.01792 0.92865 1.04108 1.46040 1.67489 1.06218 1.17328 1.21156 0.76710 0.82618 0.89695 1.90707 1.50513 1.67094 1.36734 1.21540 1.02083 0.89142 0.91451 0.85583 1.22413 0.98815 1.04369 0.97567 1.60145 1.12390 1.01514 1.57459 1.20693 0.96501 0.88757 0.94357 1.19537 1.00628 0.95458 1.00706 1.20859 0.97407 0.91704 0.98545 1.20771 1.03623 0.96624 1.02935 1.18237 0.93684 0.84050 0.93354 1.46960 1.41807 1.03911 1.41310 1.21593 0.92567 0.99270 0.91060 1.18773 0.87726 0.87765 0.91224 1.21736 1.00227 1.27715 1.08390 0.93572 1.25759 1.02081 0.94958 0.95813 1.70022 1.35153 1.30446 1.20790 0.85583 0.79070 0.78084 0.78795 1.19488 1.20131 1.20046 1.20799 1.04583 0.93984 1.04925 1.20881 0.97234 0.93586 0.95258 0.90659 0.95220 0.90993 0.92427 0.91720 0.90225 0.90379 0.74898 0.93272 0.90409 0.89058 0.84016 0.89256 0.93005 0.85494 0.88576 0.92782 0.92553 0.90616 0.97202 0.96936 0.92351 0.85253 0.84600 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.25 9.48 71.98 0.68 -1.57 16 2 C 0.13 1.83 3.18 44.99 0.14 1.97 16 3 C -0.15 -1.00 9.38 71.98 0.68 -0.32 16 4 N -0.72 -9.48 4.97 -442.53 -2.20 -11.68 16 5 C 0.51 10.90 7.19 87.66 0.63 11.53 16 6 O -0.57 -18.93 16.10 -3.04 -0.05 -18.98 16 7 C 0.07 1.15 3.00 44.17 0.13 1.28 16 8 H 0.13 1.42 7.80 -2.39 -0.02 1.40 16 9 C -0.17 -1.94 9.06 71.98 0.65 -1.29 16 10 N -0.68 -16.04 5.73 -499.47 -2.86 -18.90 16 11 C 0.12 2.65 5.61 85.56 0.48 3.13 16 12 C -0.16 -4.74 5.39 -19.84 -0.11 -4.85 16 13 C -0.07 -2.25 9.69 22.25 0.22 -2.04 16 14 C -0.22 -9.31 9.21 22.40 0.21 -9.10 16 15 C 0.21 9.03 6.55 38.22 0.25 9.28 16 16 N -0.63 -28.79 2.99 -726.55 -2.17 -30.97 16 17 C 0.10 3.59 10.19 127.77 1.30 4.89 16 18 C 0.27 14.40 4.91 85.63 0.42 14.82 16 19 C -0.54 -31.35 9.39 25.60 0.24 -31.11 16 20 H 0.05 2.73 7.81 -2.91 -0.02 2.71 16 21 C 0.01 0.76 5.46 84.66 0.46 1.22 16 22 N -0.92 -55.03 13.29 21.45 0.28 -54.74 16 23 Si 0.96 45.33 29.54 68.60 2.03 47.35 16 24 H -0.27 -12.37 7.11 99.48 0.71 -11.67 16 25 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 26 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 27 C -0.22 -7.80 9.21 22.40 0.21 -7.60 16 28 C -0.05 -1.56 9.69 22.25 0.22 -1.34 16 29 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 30 H 0.03 0.61 8.14 -2.39 -0.02 0.59 16 31 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 32 H 0.06 1.16 7.58 -2.39 -0.02 1.14 16 33 H 0.06 0.42 8.14 -2.39 -0.02 0.40 16 34 H 0.08 0.44 8.14 -2.39 -0.02 0.42 16 35 H 0.08 0.27 8.14 -2.39 -0.02 0.25 16 36 H 0.41 2.45 8.02 -92.71 -0.74 1.70 16 37 H 0.05 0.73 8.13 -2.39 -0.02 0.71 16 38 H 0.08 0.79 7.45 -2.39 -0.02 0.77 16 39 H 0.09 0.52 7.56 -2.38 -0.02 0.50 16 40 H 0.34 9.00 8.46 -89.69 -0.76 8.24 16 41 H 0.09 1.62 8.00 -2.39 -0.02 1.60 16 42 H 0.05 0.91 7.38 -2.39 -0.02 0.90 16 43 H 0.13 3.71 8.06 -2.91 -0.02 3.69 16 44 H 0.10 4.72 6.14 -2.91 -0.02 4.70 16 45 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 46 H 0.06 2.14 8.07 -2.39 -0.02 2.12 16 47 H 0.08 2.41 6.20 -2.39 -0.01 2.40 16 48 H 0.01 0.56 8.07 -2.39 -0.02 0.54 16 49 H 0.01 0.73 6.20 -2.39 -0.01 0.72 16 50 H 0.27 14.99 8.31 -92.71 -0.77 14.22 16 51 H 0.13 4.06 6.14 -2.91 -0.02 4.04 16 52 H 0.14 3.47 8.06 -2.91 -0.02 3.45 16 Total: -1.00 -75.38 420.95 1.25 -74.13 By element: Atomic # 1 Polarization: 25.47 SS G_CDS: -0.59 Total: 24.88 kcal Atomic # 6 Polarization: -17.90 SS G_CDS: 6.81 Total: -11.09 kcal Atomic # 7 Polarization: -109.34 SS G_CDS: -6.95 Total: -116.29 kcal Atomic # 8 Polarization: -18.93 SS G_CDS: -0.05 Total: -18.98 kcal Atomic # 14 Polarization: 45.33 SS G_CDS: 2.03 Total: 47.35 kcal Total: -75.38 1.25 -74.13 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000840975220.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.662 kcal (2) G-P(sol) polarization free energy of solvation -75.377 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.715 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.245 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.132 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.470 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds