Wall clock time and date at job start Tue Mar 31 2020 18:36:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46901 * 111.00040 * 2 1 4 4 C 1.50696 * 109.47399 * 66.04221 * 3 2 1 5 5 H 1.08005 * 119.99725 * 0.02562 * 4 3 2 6 6 C 1.37878 * 120.00189 * 180.02562 * 4 3 2 7 7 N 1.31512 * 119.99750 * 180.02562 * 6 4 3 8 8 Si 1.86794 * 119.99818 * 359.97438 * 6 4 3 9 9 H 1.48504 * 109.46963 * 90.00024 * 8 6 4 10 10 H 1.48502 * 109.47084 * 209.99996 * 8 6 4 11 11 H 1.48500 * 109.47321 * 330.00380 * 8 6 4 12 12 C 1.46899 * 111.00255 * 236.04264 * 2 1 3 13 13 C 1.52997 * 109.47254 * 293.95367 * 12 2 1 14 14 H 1.08998 * 109.47533 * 59.99633 * 13 12 2 15 15 O 1.42905 * 109.47264 * 299.99921 * 13 12 2 16 16 C 1.52992 * 109.47482 * 179.97438 * 13 12 2 17 17 N 1.46903 * 109.47578 * 185.00096 * 16 13 12 18 18 C 1.46903 * 111.00177 * 180.02562 * 17 16 13 19 19 C 1.52996 * 109.47090 * 180.02562 * 18 17 16 20 20 H 1.09004 * 110.18251 * 66.83215 * 19 18 17 21 21 C 1.51181 * 110.20820 * 188.74936 * 19 18 17 22 22 C 1.38182 * 131.77943 * 316.48886 * 21 19 18 23 23 C 1.38215 * 120.03008 * 180.02562 * 22 21 19 24 24 C 1.38263 * 120.00229 * 0.02562 * 23 22 21 25 25 C 1.38217 * 120.00337 * 0.02562 * 24 23 22 26 26 C 1.38184 * 120.02899 * 359.95809 * 25 24 23 27 27 C 1.51185 * 131.77474 * 179.97438 * 26 25 24 28 28 N 1.48051 * 110.20828 * 305.00024 * 19 18 17 29 29 C 1.46894 * 111.00633 * 93.98343 * 28 19 18 30 30 H 1.09005 * 109.46528 * 183.95480 * 1 2 3 31 31 H 1.09000 * 109.46785 * 303.95569 * 1 2 3 32 32 H 1.08997 * 109.47044 * 63.96124 * 1 2 3 33 33 H 1.08998 * 109.47407 * 186.04713 * 3 2 1 34 34 H 1.09007 * 109.46608 * 306.04149 * 3 2 1 35 35 H 0.97008 * 119.99731 * 179.97438 * 7 6 4 36 36 H 1.09002 * 109.47043 * 53.95437 * 12 2 1 37 37 H 1.09001 * 109.47354 * 173.95499 * 12 2 1 38 38 H 0.96696 * 114.00036 * 299.99911 * 15 13 12 39 39 H 1.09001 * 109.47563 * 305.00337 * 16 13 12 40 40 H 1.09004 * 109.47313 * 64.99993 * 16 13 12 41 41 H 1.00895 * 110.99987 * 56.04684 * 17 16 13 42 42 H 1.09001 * 109.46813 * 299.99603 * 18 17 16 43 43 H 1.08993 * 109.47342 * 59.99787 * 18 17 16 44 44 H 1.07996 * 119.97896 * 0.02602 * 22 21 19 45 45 H 1.08004 * 119.99563 * 180.02562 * 23 22 21 46 46 H 1.08000 * 119.99712 * 180.02562 * 24 23 22 47 47 H 1.07996 * 119.98727 * 179.97438 * 25 24 23 48 48 H 1.09001 * 110.20517 * 43.48701 * 27 26 25 49 49 H 1.09003 * 110.20480 * 281.58524 * 27 26 25 50 50 H 1.09005 * 109.47064 * 60.00088 * 29 28 19 51 51 H 1.09004 * 109.47478 * 179.97438 * 29 28 19 52 52 H 1.09004 * 109.46955 * 299.99957 * 29 28 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6369 2.0472 1.2983 5 1 1.0745 1.5113 2.0487 6 6 2.0268 3.3496 1.5284 7 7 1.7142 3.9391 2.6617 8 14 3.0000 4.2761 0.2308 9 1 2.0634 4.9797 -0.6819 10 1 3.8863 5.2679 0.8912 11 1 3.8240 3.3174 -0.5484 12 6 1.9955 -0.7660 -1.1375 13 6 1.6316 -2.2426 -0.9702 14 1 0.5473 -2.3476 -0.9321 15 8 2.2010 -2.7392 0.2428 16 6 2.1794 -3.0404 -2.1552 17 7 1.7289 -4.4352 -2.0568 18 6 2.2375 -5.2332 -3.1804 19 6 1.7480 -6.6763 -3.0437 20 1 0.6662 -6.7201 -3.1701 21 6 2.4307 -7.5582 -4.0644 22 6 2.7047 -7.3718 -5.4059 23 6 3.3540 -8.3590 -6.1230 24 6 3.7293 -9.5339 -5.4982 25 6 3.4548 -9.7216 -4.1567 26 6 2.8059 -8.7350 -3.4390 27 6 2.3798 -8.6582 -1.9904 28 7 2.1311 -7.2233 -1.7224 29 6 1.0467 -7.0508 -0.7466 30 1 -0.3632 -1.0253 0.0709 31 1 -0.3633 0.5740 0.8524 32 1 -0.3633 0.4511 -0.9233 33 1 3.0797 1.3445 -0.1083 34 1 1.5611 1.9273 -0.8310 35 1 1.9889 4.8553 2.8236 36 1 1.5612 -0.3873 -2.0628 37 1 3.0798 -0.6612 -1.1755 38 1 3.1653 -2.6771 0.2789 39 1 1.8145 -2.6056 -3.0858 40 1 3.2688 -3.0087 -2.1421 41 1 0.7228 -4.4872 -2.0021 42 1 1.8733 -4.8137 -4.1182 43 1 3.3273 -5.2167 -3.1739 44 1 2.4112 -6.4543 -5.8942 45 1 3.5682 -8.2125 -7.1714 46 1 4.2371 -10.3050 -6.0585 47 1 3.7477 -10.6396 -3.6690 48 1 3.1750 -9.0294 -1.3439 49 1 1.4676 -9.2343 -1.8353 50 1 0.1565 -7.5735 -1.0965 51 1 1.3544 -7.4616 0.2151 52 1 0.8244 -5.9896 -0.6344 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000872236140.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:36:27 Heat of formation + Delta-G solvation = -15.093573 kcal Electronic energy + Delta-G solvation = -28377.183494 eV Core-core repulsion = 24569.052921 eV Total energy + Delta-G solvation = -3808.130573 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.51185 -39.55340 -38.20421 -37.26982 -35.86940 -34.58392 -32.80956 -32.27706 -31.36218 -29.96007 -28.92046 -27.44088 -27.17369 -25.34067 -23.94792 -23.34019 -22.59566 -22.11728 -21.75114 -21.21376 -19.01833 -17.70193 -17.33512 -17.07976 -16.81167 -16.56332 -16.39689 -16.32114 -15.96745 -15.93828 -15.48072 -15.31679 -14.90367 -14.70395 -14.50965 -14.36888 -14.21940 -14.00238 -13.86291 -13.48346 -13.37513 -13.17781 -13.14038 -12.93012 -12.67436 -12.57194 -12.47805 -12.43472 -12.25865 -12.09748 -11.94065 -11.81644 -11.68495 -11.57660 -11.48017 -10.79087 -10.62201 -9.91844 -9.78312 -9.26759 -9.11922 -8.95233 -8.27613 -6.31128 0.36518 0.43575 1.33827 1.36336 1.47147 2.34555 2.76726 2.89179 3.02084 3.05446 3.34925 3.43605 3.65039 3.77948 3.95978 4.05898 4.10295 4.19769 4.22212 4.24518 4.33798 4.38341 4.45273 4.48590 4.51431 4.56176 4.61646 4.63700 4.64650 4.69412 4.73731 4.78508 4.79927 4.90706 4.99389 5.01748 5.03047 5.11581 5.15723 5.25340 5.27781 5.49605 5.50779 5.54054 5.58337 5.88461 5.98489 6.05554 6.08875 6.09333 6.37412 6.45200 6.67825 6.75553 7.09184 7.32247 8.89225 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.025358 B = 0.001888 C = 0.001811 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1103.905361 B =14825.727952 C =15460.175623 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.042 3.958 2 N -0.539 5.539 3 C 0.172 3.828 4 C -0.517 4.517 5 H 0.035 0.965 6 C 0.004 3.996 7 N -0.949 5.949 8 Si 0.951 3.049 9 H -0.268 1.268 10 H -0.281 1.281 11 H -0.248 1.248 12 C 0.021 3.979 13 C 0.129 3.871 14 H 0.089 0.911 15 O -0.554 6.554 16 C 0.041 3.959 17 N -0.673 5.673 18 C 0.088 3.912 19 C 0.112 3.888 20 H 0.064 0.936 21 C -0.114 4.114 22 C -0.108 4.108 23 C -0.124 4.124 24 C -0.121 4.121 25 C -0.111 4.111 26 C -0.116 4.116 27 C 0.070 3.930 28 N -0.499 5.499 29 C 0.020 3.980 30 H 0.075 0.925 31 H 0.044 0.956 32 H 0.020 0.980 33 H 0.030 0.970 34 H -0.015 1.015 35 H 0.267 0.733 36 H 0.041 0.959 37 H 0.075 0.925 38 H 0.377 0.623 39 H 0.046 0.954 40 H 0.076 0.924 41 H 0.339 0.661 42 H 0.042 0.958 43 H 0.064 0.936 44 H 0.132 0.868 45 H 0.147 0.853 46 H 0.148 0.852 47 H 0.138 0.862 48 H 0.091 0.909 49 H 0.065 0.935 50 H 0.029 0.971 51 H 0.069 0.931 52 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.017 -29.495 -21.296 36.435 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 N -0.263 5.263 3 C 0.045 3.955 4 C -0.555 4.555 5 H 0.053 0.947 6 C -0.193 4.193 7 N -0.590 5.590 8 Si 0.774 3.226 9 H -0.193 1.193 10 H -0.207 1.207 11 H -0.171 1.171 12 C -0.108 4.108 13 C 0.069 3.931 14 H 0.107 0.893 15 O -0.359 6.359 16 C -0.089 4.089 17 N -0.304 5.304 18 C -0.042 4.042 19 C 0.003 3.997 20 H 0.082 0.918 21 C -0.115 4.115 22 C -0.126 4.126 23 C -0.142 4.142 24 C -0.139 4.139 25 C -0.129 4.129 26 C -0.117 4.117 27 C -0.057 4.057 28 N -0.222 5.222 29 C -0.129 4.129 30 H 0.093 0.907 31 H 0.063 0.937 32 H 0.039 0.961 33 H 0.048 0.952 34 H 0.003 0.997 35 H 0.075 0.925 36 H 0.059 0.941 37 H 0.093 0.907 38 H 0.225 0.775 39 H 0.064 0.936 40 H 0.095 0.905 41 H 0.157 0.843 42 H 0.060 0.940 43 H 0.083 0.917 44 H 0.150 0.850 45 H 0.164 0.836 46 H 0.166 0.834 47 H 0.155 0.845 48 H 0.109 0.891 49 H 0.083 0.917 50 H 0.048 0.952 51 H 0.087 0.913 52 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 2.529 -29.580 -19.936 35.761 hybrid contribution -0.776 1.345 -1.721 2.318 sum 1.753 -28.235 -21.656 35.627 Atomic orbital electron populations 1.22193 0.87808 1.01062 0.99584 1.61723 1.08021 1.14287 1.42266 1.19957 0.95220 0.85966 0.94403 1.21284 1.34813 0.97474 1.01925 0.94696 1.25902 0.97060 0.98464 0.97844 1.70064 1.48637 1.13859 1.26402 0.85665 0.79178 0.78657 0.79094 1.19298 1.20677 1.17147 1.22899 1.00713 0.95307 0.91848 1.21725 0.98020 0.88983 0.84389 0.89333 1.86565 1.25852 1.84989 1.38492 1.22514 1.01133 0.88409 0.96855 1.60300 1.15971 1.09497 1.44654 1.21782 1.00195 0.90824 0.91397 1.21138 0.97156 0.93811 0.87570 0.91805 1.20595 1.00235 0.96059 0.94643 1.20743 0.99239 1.00230 0.92418 1.21419 0.98255 0.93529 1.01009 1.21437 0.99727 0.98302 0.94384 1.20784 0.98599 0.98933 0.94606 1.20796 0.99385 0.95358 0.96148 1.21751 1.01108 0.90425 0.92412 1.65104 1.39995 1.10556 1.06553 1.22638 0.91012 1.03584 0.95622 0.90653 0.93738 0.96112 0.95226 0.99705 0.92453 0.94102 0.90656 0.77542 0.93633 0.90533 0.84252 0.94023 0.91721 0.85000 0.83571 0.83419 0.84455 0.89099 0.91682 0.95212 0.91254 0.89607 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.62 9.14 127.69 1.17 2.79 16 2 N -0.54 -22.36 4.62 -927.04 -4.28 -26.64 16 3 C 0.17 8.30 3.79 85.56 0.32 8.63 16 4 C -0.52 -30.56 9.01 25.60 0.23 -30.33 16 5 H 0.03 2.32 7.37 -2.91 -0.02 2.30 16 6 C 0.00 0.25 5.47 84.66 0.46 0.72 16 7 N -0.95 -60.28 13.96 21.45 0.30 -59.98 16 8 Si 0.95 44.35 27.47 68.60 1.88 46.23 16 9 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 10 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 11 H -0.25 -10.67 6.54 99.48 0.65 -10.02 16 12 C 0.02 0.65 4.62 86.30 0.40 1.05 16 13 C 0.13 3.28 3.01 30.59 0.09 3.37 16 14 H 0.09 2.29 6.55 -2.39 -0.02 2.27 16 15 O -0.55 -16.73 13.15 -148.98 -1.96 -18.69 16 16 C 0.04 0.80 5.32 86.30 0.46 1.26 16 17 N -0.67 -12.56 4.81 -513.90 -2.47 -15.04 16 18 C 0.09 1.50 5.30 86.30 0.46 1.96 16 19 C 0.11 1.93 2.72 44.10 0.12 2.05 16 20 H 0.06 1.05 7.77 -2.38 -0.02 1.04 16 21 C -0.11 -1.96 5.68 -19.68 -0.11 -2.08 16 22 C -0.11 -1.56 9.84 22.25 0.22 -1.34 16 23 C -0.12 -1.49 10.05 22.27 0.22 -1.26 16 24 C -0.12 -1.40 10.05 22.27 0.22 -1.18 16 25 C -0.11 -1.53 10.04 22.25 0.22 -1.30 16 26 C -0.12 -1.97 6.26 -19.67 -0.12 -2.10 16 27 C 0.07 1.16 6.61 85.49 0.57 1.73 16 28 N -0.50 -9.47 5.28 -897.97 -4.74 -14.21 16 29 C 0.02 0.34 9.17 127.69 1.17 1.51 16 30 H 0.07 2.50 6.47 -2.38 -0.02 2.48 16 31 H 0.04 2.02 6.76 -2.39 -0.02 2.00 16 32 H 0.02 0.73 8.14 -2.39 -0.02 0.71 16 33 H 0.03 1.41 6.99 -2.39 -0.02 1.40 16 34 H -0.01 -0.69 7.55 -2.38 -0.02 -0.71 16 35 H 0.27 15.74 8.31 -92.70 -0.77 14.96 16 36 H 0.04 1.15 8.12 -2.39 -0.02 1.13 16 37 H 0.07 2.23 7.93 -2.39 -0.02 2.21 16 38 H 0.38 9.78 9.05 -74.06 -0.67 9.11 16 39 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 40 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 41 H 0.34 5.88 7.97 -89.70 -0.71 5.16 16 42 H 0.04 0.61 8.14 -2.39 -0.02 0.59 16 43 H 0.06 1.32 8.13 -2.39 -0.02 1.30 16 44 H 0.13 1.49 8.06 -2.91 -0.02 1.47 16 45 H 0.15 1.03 8.06 -2.91 -0.02 1.01 16 46 H 0.15 0.95 8.06 -2.91 -0.02 0.92 16 47 H 0.14 1.34 8.06 -2.91 -0.02 1.32 16 48 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 49 H 0.07 0.95 7.69 -2.39 -0.02 0.93 16 50 H 0.03 0.45 7.91 -2.38 -0.02 0.43 16 51 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 52 H 0.09 1.66 5.94 -2.38 -0.01 1.65 16 Total: -1.00 -72.02 407.73 -5.70 -77.72 By element: Atomic # 1 Polarization: 25.68 SS G_CDS: -0.53 Total: 25.15 kcal Atomic # 6 Polarization: -20.63 SS G_CDS: 6.10 Total: -14.53 kcal Atomic # 7 Polarization: -104.67 SS G_CDS: -11.20 Total: -115.87 kcal Atomic # 8 Polarization: -16.73 SS G_CDS: -1.96 Total: -18.69 kcal Atomic # 14 Polarization: 44.35 SS G_CDS: 1.88 Total: 46.23 kcal Total: -72.02 -5.70 -77.72 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000872236140.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.622 kcal (2) G-P(sol) polarization free energy of solvation -72.015 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.394 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.700 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.715 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.094 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds